RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 TMEM179Q6ZVK1 233 aa12.01□□□□□ -0.49
CLIP1-213ENST00000540338 MYOCDQ8IZQ8 938 aa12.01□□□□□ -0.49
CLIP1-213ENST00000540338 KRT222Q8N1A0 295 aa12.01□□□□□ -0.49
CLIP1-213ENST00000540338 PAPPAQ13219 1627 aa12.01□□□□□ -0.49
CLIP1-213ENST00000540338 TCP10L2B9ZVM9 353 aa12.01□□□□□ -0.49
CLIP1-213ENST00000540338 USP17L10C9JJH3 530 aa12.01□□□□□ -0.49
CLIP1-213ENST00000540338 MFAP3LO75121 409 aa12.01□□□□□ -0.49
CLIP1-213ENST00000540338 PRR16Q569H4 304 aa12.01□□□□□ -0.49
CLIP1-213ENST00000540338 POTEDQ86YR6 584 aa12.01□□□□□ -0.49
CLIP1-213ENST00000540338 CNOT6LQ96LI5 555 aaKnown RBP12.01□□□□□ -0.49
CLIP1-213ENST00000540338 NAPGQ99747 312 aaPredicted RBP12.01□□□□□ -0.49
CLIP1-213ENST00000540338 SOWAHDA6NJG2 315 aa12□□□□□ -0.49
CLIP1-213ENST00000540338 PPP1R3GB7ZBB8 358 aa12□□□□□ -0.49
CLIP1-213ENST00000540338 CLEC10AQ8IUN9 316 aa12□□□□□ -0.49
CLIP1-213ENST00000540338 DCAF4Q8WV16 495 aa12□□□□□ -0.49
CLIP1-213ENST00000540338 JDP2Q8WYK2 163 aa12□□□□□ -0.49
CLIP1-213ENST00000540338 IQCDQ96DY2 449 aa12□□□□□ -0.49
CLIP1-213ENST00000540338 ALS2CR12Q96Q35 445 aa12□□□□□ -0.49
CLIP1-213ENST00000540338 OGFRQ9NZT2 677 aa12□□□□□ -0.49
CLIP1-213ENST00000540338 PUF60Q9UHX1 559 aaKnown RBP12□□□□□ -0.49
CLIP1-213ENST00000540338 FAM196BA6NMK8 535 aa12□□□□□ -0.49
CLIP1-213ENST00000540338 EIF3JO75822 258 aaKnown RBP12□□□□□ -0.49
CLIP1-213ENST00000540338 VEGFAP15692 232 aaPredicted RBP12□□□□□ -0.49
CLIP1-213ENST00000540338 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12□□□□□ -0.49
CLIP1-213ENST00000540338 GOPCQ9HD26 462 aa12□□□□□ -0.49
CLIP1-213ENST00000540338 ARFGAP3Q9NP61 516 aa12□□□□□ -0.49
CLIP1-213ENST00000540338 JADE2Q9NQC1 790 aa12□□□□□ -0.49
CLIP1-213ENST00000540338 TBC1D7Q9P0N9 293 aa12□□□□□ -0.49
CLIP1-213ENST00000540338 ESYT2A0FGR8 921 aa12□□□□□ -0.49
CLIP1-213ENST00000540338 B4DLN1 442 aa12□□□□□ -0.49
CLIP1-213ENST00000540338 CFBP00751 764 aa12□□□□□ -0.49
CLIP1-213ENST00000540338 EEF2P13639 858 aaKnown RBP12□□□□□ -0.49
CLIP1-213ENST00000540338 CDC37Q16543 378 aaPredicted RBP12□□□□□ -0.49
CLIP1-213ENST00000540338 STRIP1Q5VSL9 837 aa12□□□□□ -0.49
CLIP1-213ENST00000540338 NYAP1Q6ZVC0 841 aa12□□□□□ -0.49
CLIP1-213ENST00000540338 COL23A1Q86Y22 540 aaPredicted RBP12□□□□□ -0.49
CLIP1-213ENST00000540338 CHURC1Q8WUH1 139 aa12□□□□□ -0.49
CLIP1-213ENST00000540338 ADD3Q9UEY8 706 aaKnown RBP12□□□□□ -0.49
CLIP1-213ENST00000540338 EPN1Q9Y6I3 576 aaPredicted RBP12□□□□□ -0.49
CLIP1-213ENST00000540338 XIRP1Q702N8 1843 aaKnown RBP12□□□□□ -0.49
CLIP1-213ENST00000540338 A0A087X0B3 334 aa12□□□□□ -0.49
CLIP1-213ENST00000540338 TRIM49BA6NDI0 452 aa12□□□□□ -0.49
CLIP1-213ENST00000540338 BMP3P12645 472 aa12□□□□□ -0.49
CLIP1-213ENST00000540338 RAD51AP2Q09MP3 1159 aa12□□□□□ -0.49
CLIP1-213ENST00000540338 ZYXQ15942 572 aaKnown RBP12□□□□□ -0.49
CLIP1-213ENST00000540338 FAM26FQ5R3K3 315 aa12□□□□□ -0.49
CLIP1-213ENST00000540338 GPBP1Q86WP2 473 aa12□□□□□ -0.49
CLIP1-213ENST00000540338 PANK4Q9NVE7 773 aa12□□□□□ -0.49
CLIP1-213ENST00000540338 KIAA1024Q9UPX6 916 aa12□□□□□ -0.49
CLIP1-213ENST00000540338 GLI3P10071 1580 aa11.99□□□□□ -0.49
CLIP1-213ENST00000540338 COL1A1P02452 1464 aaPredicted RBP11.99□□□□□ -0.49
CLIP1-213ENST00000540338 CETN3O15182 167 aa11.99□□□□□ -0.49
CLIP1-213ENST00000540338 TACC1O75410 805 aa11.99□□□□□ -0.49
CLIP1-213ENST00000540338 SEPT2Q15019 361 aa11.99□□□□□ -0.49
CLIP1-213ENST00000540338 TTBK2Q6IQ55 1244 aa11.99□□□□□ -0.49
CLIP1-213ENST00000540338 TDRD3Q9H7E2 651 aaKnown RBP11.99□□□□□ -0.49
CLIP1-213ENST00000540338 RIC8AQ9NPQ8 531 aa11.99□□□□□ -0.49
CLIP1-213ENST00000540338 CYTH3O43739 400 aa11.99□□□□□ -0.49
CLIP1-213ENST00000540338 TDP2O95551 362 aa11.99□□□□□ -0.49
CLIP1-213ENST00000540338 CD44P16070 742 aaKnown RBP11.99□□□□□ -0.49
CLIP1-213ENST00000540338 BMP6P22004 513 aa11.99□□□□□ -0.49
CLIP1-213ENST00000540338 RHBDL3P58872 404 aa11.99□□□□□ -0.49
CLIP1-213ENST00000540338 AMIGO3Q86WK7 504 aa11.99□□□□□ -0.49
CLIP1-213ENST00000540338 SPAG5Q96R06 1193 aa11.99□□□□□ -0.49
CLIP1-213ENST00000540338 PRDM10Q9NQV6 1147 aa11.99□□□□□ -0.49
CLIP1-213ENST00000540338 LIMA1Q9UHB6 759 aaKnown RBP11.99□□□□□ -0.49
CLIP1-213ENST00000540338 MORC2Q9Y6X9 1032 aaPredicted RBP11.99□□□□□ -0.49
CLIP1-213ENST00000540338 FAM13AO94988 1023 aa11.99□□□□□ -0.49
CLIP1-213ENST00000540338 NCBP1Q09161 790 aaKnown RBP11.99□□□□□ -0.49
CLIP1-213ENST00000540338 PDXDC2PQ6P474 469 aa11.99□□□□□ -0.49
CLIP1-213ENST00000540338 VPS36Q86VN1 386 aa11.99□□□□□ -0.49
CLIP1-213ENST00000540338 NELFCDQ8IXH7 590 aa11.99□□□□□ -0.49
CLIP1-213ENST00000540338 ADSSL1Q8N142 457 aa11.99□□□□□ -0.49
CLIP1-213ENST00000540338 MB21D1Q8N884 522 aa11.99□□□□□ -0.49
CLIP1-213ENST00000540338 GAKO14976 1311 aa11.99□□□□□ -0.49
CLIP1-213ENST00000540338 POTEMA6NI47 508 aa11.98□□□□□ -0.49
CLIP1-213ENST00000540338 ZNF18P17022 549 aa11.98□□□□□ -0.49
CLIP1-213ENST00000540338 MCM3P25205 808 aa11.98□□□□□ -0.49
CLIP1-213ENST00000540338 CKAP4Q07065 602 aaKnown RBP11.98□□□□□ -0.49
CLIP1-213ENST00000540338 TOGARAM2Q6ZUX3 1019 aa11.98□□□□□ -0.49
CLIP1-213ENST00000540338 SH3RF1Q7Z6J0 888 aa11.98□□□□□ -0.49
CLIP1-213ENST00000540338 SPICE1Q8N0Z3 855 aa11.98□□□□□ -0.49
CLIP1-213ENST00000540338 RETREG2Q8NC44 543 aa11.98□□□□□ -0.49
CLIP1-213ENST00000540338 SAMM50Q9Y512 469 aa11.98□□□□□ -0.49
CLIP1-213ENST00000540338 EFCAB8A8MWE9 144 aa11.98□□□□□ -0.49
CLIP1-213ENST00000540338 ERCC3P19447 782 aa11.98□□□□□ -0.49
CLIP1-213ENST00000540338 RPL13P26373 211 aaKnown RBP11.98□□□□□ -0.49
CLIP1-213ENST00000540338 PAFAH1B1P43034 410 aa11.98□□□□□ -0.49
CLIP1-213ENST00000540338 TNNT3P45378 269 aaPredicted RBP11.98□□□□□ -0.49
CLIP1-213ENST00000540338 NIM1KQ8IY84 436 aa11.98□□□□□ -0.49
CLIP1-213ENST00000540338 TC2NQ8N9U0 490 aa11.98□□□□□ -0.49
CLIP1-213ENST00000540338 TNFRSF25Q93038 417 aa11.98□□□□□ -0.49
CLIP1-213ENST00000540338 ANO3Q9BYT9 981 aa11.98□□□□□ -0.49
CLIP1-213ENST00000540338 TRIM9Q9C026 710 aa11.98□□□□□ -0.49
CLIP1-213ENST00000540338 FAM207AQ9NSI2 230 aaPredicted RBP11.98□□□□□ -0.49
CLIP1-213ENST00000540338 PVALEFA0A1B0GWK0 134 aa11.98□□□□□ -0.49
CLIP1-213ENST00000540338 CLRN2A0PK11 232 aa11.98□□□□□ -0.49
CLIP1-213ENST00000540338 HOXA7P31268 230 aaPredicted RBP11.98□□□□□ -0.49
CLIP1-213ENST00000540338 CHMP4BP1P59074 171 aa11.98□□□□□ -0.49
CLIP1-213ENST00000540338 AOC3Q16853 763 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms