RNA–Protein interactions for RNA: ENST00000537033.1

SYNE1-235, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 647 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-235ENST00000537033 KDM4AO75164 1064 aa16.32■□□□□ 0.2
SYNE1-235ENST00000537033 MRPL12P52815 198 aaKnown RBP16.32■□□□□ 0.2
SYNE1-235ENST00000537033 TAPT1Q6NXT6 567 aa16.32■□□□□ 0.2
SYNE1-235ENST00000537033 PURBQ96QR8 312 aaKnown RBP16.32■□□□□ 0.2
SYNE1-235ENST00000537033 DSCC1Q9BVC3 393 aa16.32■□□□□ 0.2
SYNE1-235ENST00000537033 PPP1R12CQ9BZL4 782 aa16.32■□□□□ 0.2
SYNE1-235ENST00000537033 MYH6P13533 1939 aa16.31■□□□□ 0.2
SYNE1-235ENST00000537033 RAD50Q92878 1312 aa16.31■□□□□ 0.2
SYNE1-235ENST00000537033 TMEM265A0A087WTH1 108 aa16.31■□□□□ 0.2
SYNE1-235ENST00000537033 DLL1O00548 723 aa16.31■□□□□ 0.2
SYNE1-235ENST00000537033 PDE4DQ08499 809 aa16.31■□□□□ 0.2
SYNE1-235ENST00000537033 ITGA7Q13683 1181 aa16.31■□□□□ 0.2
SYNE1-235ENST00000537033 DUSP28Q4G0W2 176 aa16.31■□□□□ 0.2
SYNE1-235ENST00000537033 SLC30A10Q6XR72 485 aa16.31■□□□□ 0.2
SYNE1-235ENST00000537033 PNMA1Q8ND90 353 aa16.31■□□□□ 0.2
SYNE1-235ENST00000537033 KRT23Q9C075 422 aa16.31■□□□□ 0.2
SYNE1-235ENST00000537033 SEMA6BQ9H3T3 888 aa16.31■□□□□ 0.2
SYNE1-235ENST00000537033 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.3■□□□□ 0.2
SYNE1-235ENST00000537033 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.3■□□□□ 0.2
SYNE1-235ENST00000537033 B4E1Z4 1266 aa16.3■□□□□ 0.2
SYNE1-235ENST00000537033 GOLGA8HP0CJ92 632 aa16.3■□□□□ 0.2
SYNE1-235ENST00000537033 CPT1AP50416 773 aa16.3■□□□□ 0.2
SYNE1-235ENST00000537033 RPS6P62753 249 aaKnown RBP16.3■□□□□ 0.2
SYNE1-235ENST00000537033 USH1GQ495M9 461 aa16.3■□□□□ 0.2
SYNE1-235ENST00000537033 BRDTQ58F21 947 aaPredicted RBP16.3■□□□□ 0.2
SYNE1-235ENST00000537033 PSRC1Q6PGN9 363 aaPredicted RBP16.3■□□□□ 0.2
SYNE1-235ENST00000537033 DNERQ8NFT8 737 aa16.3■□□□□ 0.2
SYNE1-235ENST00000537033 CLEC4DQ8WXI8 215 aa16.3■□□□□ 0.2
SYNE1-235ENST00000537033 ZSCAN10Q96SZ4 725 aaPredicted RBP16.3■□□□□ 0.2
SYNE1-235ENST00000537033 CDX2Q99626 313 aaPredicted RBP16.3■□□□□ 0.2
SYNE1-235ENST00000537033 UBAC1Q9BSL1 405 aa16.3■□□□□ 0.2
SYNE1-235ENST00000537033 WDR11Q9BZH6 1224 aa16.3■□□□□ 0.2
SYNE1-235ENST00000537033 CNNM2Q9H8M5 875 aa16.3■□□□□ 0.2
SYNE1-235ENST00000537033 POLR3EQ9NVU0 708 aa16.3■□□□□ 0.2
SYNE1-235ENST00000537033 LAMA2P24043 3122 aaKnown RBP16.29■□□□□ 0.2
SYNE1-235ENST00000537033 DHX16O60231 1041 aaKnown RBP16.29■□□□□ 0.2
SYNE1-235ENST00000537033 CD4P01730 458 aa16.29■□□□□ 0.2
SYNE1-235ENST00000537033 CSF2RAP15509 400 aa16.29■□□□□ 0.2
SYNE1-235ENST00000537033 PPP2R5BQ15173 497 aa16.29■□□□□ 0.2
SYNE1-235ENST00000537033 CDC37Q16543 378 aaPredicted RBP16.29■□□□□ 0.2
SYNE1-235ENST00000537033 ASPRV1Q53RT3 343 aa16.29■□□□□ 0.2
SYNE1-235ENST00000537033 SLC43A3Q8NBI5 491 aa16.29■□□□□ 0.2
SYNE1-235ENST00000537033 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.29■□□□□ 0.2
SYNE1-235ENST00000537033 MTIF3Q9H2K0 278 aaKnown RBP16.29■□□□□ 0.2
SYNE1-235ENST00000537033 HIPK3Q9H422 1215 aa16.29■□□□□ 0.2
SYNE1-235ENST00000537033 GPHNQ9NQX3 736 aaPredicted RBP16.29■□□□□ 0.2
SYNE1-235ENST00000537033 TNKSO95271 1327 aa16.28■□□□□ 0.2
SYNE1-235ENST00000537033 ABCB11O95342 1321 aa16.28■□□□□ 0.2
SYNE1-235ENST00000537033 NKRFO15226 690 aaKnown RBP eCLIP16.28■□□□□ 0.2
SYNE1-235ENST00000537033 PARP1P09874 1014 aaKnown RBP16.28■□□□□ 0.2
SYNE1-235ENST00000537033 PTGS1P23219 599 aa16.28■□□□□ 0.2
SYNE1-235ENST00000537033 DNAJB2P25686 324 aa16.28■□□□□ 0.2
SYNE1-235ENST00000537033 OR6J1Q8NGC5 347 aa16.28■□□□□ 0.2
SYNE1-235ENST00000537033 SCFD2Q8WU76 684 aa16.28■□□□□ 0.2
SYNE1-235ENST00000537033 ANKS1AQ92625 1134 aa16.28■□□□□ 0.2
SYNE1-235ENST00000537033 TTYH1Q9H313 450 aaPredicted RBP16.28■□□□□ 0.2
SYNE1-235ENST00000537033 RBM47A0AV96 593 aaKnown RBP16.27■□□□□ 0.2
SYNE1-235ENST00000537033 MYL3P08590 195 aa16.27■□□□□ 0.2
SYNE1-235ENST00000537033 CYP2C18P33260 490 aa16.27■□□□□ 0.2
SYNE1-235ENST00000537033 PSMC6P62333 389 aa16.27■□□□□ 0.2
SYNE1-235ENST00000537033 ENAHQ8N8S7 591 aaPredicted RBP16.27■□□□□ 0.2
SYNE1-235ENST00000537033 RGS22Q8NE09 1264 aa16.27■□□□□ 0.2
SYNE1-235ENST00000537033 UBA5Q9GZZ9 404 aa16.27■□□□□ 0.2
SYNE1-235ENST00000537033 MAF1Q9H063 256 aa16.27■□□□□ 0.2
SYNE1-235ENST00000537033 CPVLQ9H3G5 476 aa16.27■□□□□ 0.2
SYNE1-235ENST00000537033 IL23AQ9NPF7 189 aa16.27■□□□□ 0.2
SYNE1-235ENST00000537033 ZSWIM5Q9P217 1185 aa16.27■□□□□ 0.2
SYNE1-235ENST00000537033 B4GALT4O60513 344 aa16.26■□□□□ 0.19
SYNE1-235ENST00000537033 ACRP10323 421 aa16.26■□□□□ 0.19
SYNE1-235ENST00000537033 FOSL2P15408 326 aa16.26■□□□□ 0.19
SYNE1-235ENST00000537033 EDNRBP24530 442 aa16.26■□□□□ 0.19
SYNE1-235ENST00000537033 TMEM240Q5SV17 173 aa16.26■□□□□ 0.19
SYNE1-235ENST00000537033 TMEM63BQ5T3F8 832 aa16.26■□□□□ 0.19
SYNE1-235ENST00000537033 IFIT1BQ5T764 474 aaKnown RBP16.26■□□□□ 0.19
SYNE1-235ENST00000537033 TTC22Q5TAA0 569 aa16.26■□□□□ 0.19
SYNE1-235ENST00000537033 MCF2L2Q86YR7 1114 aa16.26■□□□□ 0.19
SYNE1-235ENST00000537033 PHF6Q8IWS0 365 aaKnown RBP eCLIP16.26■□□□□ 0.19
SYNE1-235ENST00000537033 ADGRF4Q8IZF3 695 aa16.26■□□□□ 0.19
SYNE1-235ENST00000537033 MAFAQ8NHW3 353 aaPredicted RBP16.26■□□□□ 0.19
SYNE1-235ENST00000537033 RUFY2Q8WXA3 655 aa16.26■□□□□ 0.19
SYNE1-235ENST00000537033 MYLIPQ8WY64 445 aa16.26■□□□□ 0.19
SYNE1-235ENST00000537033 MTG1Q9BT17 334 aaPredicted RBP16.26■□□□□ 0.19
SYNE1-235ENST00000537033 TRPV6Q9H1D0 765 aa16.26■□□□□ 0.19
SYNE1-235ENST00000537033 GRIN2DO15399 1336 aa16.25■□□□□ 0.19
SYNE1-235ENST00000537033 KPNA6O60684 536 aa16.25■□□□□ 0.19
SYNE1-235ENST00000537033 SUPT20HL2P0C7V6 817 aa16.25■□□□□ 0.19
SYNE1-235ENST00000537033 PURAQ00577 322 aaKnown RBP16.25■□□□□ 0.19
SYNE1-235ENST00000537033 TRDNQ13061 729 aa16.25■□□□□ 0.19
SYNE1-235ENST00000537033 TTLL4Q14679 1199 aa16.25■□□□□ 0.19
SYNE1-235ENST00000537033 ZNF365Q70YC5 407 aa16.25■□□□□ 0.19
SYNE1-235ENST00000537033 FBXO11Q86XK2 927 aa16.25■□□□□ 0.19
SYNE1-235ENST00000537033 TIFAQ96CG3 184 aa16.25■□□□□ 0.19
SYNE1-235ENST00000537033 ALDH8A1Q9H2A2 487 aaPredicted RBP16.25■□□□□ 0.19
SYNE1-235ENST00000537033 MRPL11Q9Y3B7 192 aaKnown RBP16.25■□□□□ 0.19
SYNE1-235ENST00000537033 SUPT16HQ9Y5B9 1047 aaKnown RBP16.25■□□□□ 0.19
SYNE1-235ENST00000537033 KIAA1217Q5T5P2 1943 aa16.24■□□□□ 0.19
SYNE1-235ENST00000537033 TXNP10599 105 aaKnown RBP16.24■□□□□ 0.19
SYNE1-235ENST00000537033 QRICH1Q2TAL8 776 aa16.24■□□□□ 0.19
SYNE1-235ENST00000537033 FAM47CQ5HY64 1035 aa16.24■□□□□ 0.19
SYNE1-235ENST00000537033 C16orf59Q7L2K0 433 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms