RNA–Protein interactions for RNA: ENST00000535896.6

SYNE1-233, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-233ENST00000535896 CCDC148Q8NFR7 591 aa7.11□□□□□ -1.27
SYNE1-233ENST00000535896 SYMPKQ92797 1274 aaKnown RBP7.11□□□□□ -1.27
SYNE1-233ENST00000535896 DNAJC7Q99615 494 aa7.11□□□□□ -1.27
SYNE1-233ENST00000535896 NUP58Q9BVL2 599 aa7.11□□□□□ -1.27
SYNE1-233ENST00000535896 THAP9Q9H5L6 903 aa7.11□□□□□ -1.27
SYNE1-233ENST00000535896 ANKZF1Q9H8Y5 726 aa7.11□□□□□ -1.27
SYNE1-233ENST00000535896 ARMT1Q9H993 441 aa7.11□□□□□ -1.27
SYNE1-233ENST00000535896 SENP2Q9HC62 589 aa7.11□□□□□ -1.27
SYNE1-233ENST00000535896 CABP5Q9NP86 173 aa7.11□□□□□ -1.27
SYNE1-233ENST00000535896 MKRN1Q9UHC7 482 aaKnown RBP7.11□□□□□ -1.27
SYNE1-233ENST00000535896 DENND2AQ9ULE3 1009 aa7.11□□□□□ -1.27
SYNE1-233ENST00000535896 L1RE1Q9UN81 338 aa7.11□□□□□ -1.27
SYNE1-233ENST00000535896 ABCB11O95342 1321 aa7.11□□□□□ -1.27
SYNE1-233ENST00000535896 CNTNAP5Q8WYK1 1306 aa7.11□□□□□ -1.27
SYNE1-233ENST00000535896 COL11A2P13942 1736 aaPredicted RBP7.11□□□□□ -1.27
SYNE1-233ENST00000535896 DDX60LQ5H9U9 1706 aaKnown RBP7.11□□□□□ -1.27
SYNE1-233ENST00000535896 A6NNZ2 444 aa7.1□□□□□ -1.27
SYNE1-233ENST00000535896 DGAT1O75907 488 aa7.1□□□□□ -1.27
SYNE1-233ENST00000535896 NPR1P16066 1061 aa7.1□□□□□ -1.27
SYNE1-233ENST00000535896 CASP14P31944 242 aa7.1□□□□□ -1.27
SYNE1-233ENST00000535896 KIF5BP33176 963 aa7.1□□□□□ -1.27
SYNE1-233ENST00000535896 ACTN2P35609 894 aa7.1□□□□□ -1.27
SYNE1-233ENST00000535896 PRPHP41219 470 aa7.1□□□□□ -1.27
SYNE1-233ENST00000535896 AARSP49588 968 aaKnown RBP eCLIP7.1□□□□□ -1.27
SYNE1-233ENST00000535896 COPB1P53618 953 aaKnown RBP7.1□□□□□ -1.27
SYNE1-233ENST00000535896 GRIN1Q05586 938 aa7.1□□□□□ -1.27
SYNE1-233ENST00000535896 TROAPQ12815 778 aa7.1□□□□□ -1.27
SYNE1-233ENST00000535896 NR5A1Q13285 461 aa7.1□□□□□ -1.27
SYNE1-233ENST00000535896 UBE4AQ14139 1066 aa7.1□□□□□ -1.27
SYNE1-233ENST00000535896 KRT31Q15323 416 aa7.1□□□□□ -1.27
SYNE1-233ENST00000535896 SF3B3Q15393 1217 aaKnown RBP7.1□□□□□ -1.27
SYNE1-233ENST00000535896 PKN1Q16512 942 aa7.1□□□□□ -1.27
SYNE1-233ENST00000535896 KIF4BQ2VIQ3 1234 aa7.1□□□□□ -1.27
SYNE1-233ENST00000535896 TUBB8Q3ZCM7 444 aa7.1□□□□□ -1.27
SYNE1-233ENST00000535896 TCP11X2Q5H9J9 407 aa7.1□□□□□ -1.27
SYNE1-233ENST00000535896 FIGNQ5HY92 759 aa7.1□□□□□ -1.27
SYNE1-233ENST00000535896 SWT1Q5T5J6 900 aaKnown RBP7.1□□□□□ -1.27
SYNE1-233ENST00000535896 IFIT1BQ5T764 474 aaKnown RBP7.1□□□□□ -1.27
SYNE1-233ENST00000535896 STYK1Q6J9G0 422 aa7.1□□□□□ -1.27
SYNE1-233ENST00000535896 PDXDC2PQ6P474 469 aa7.1□□□□□ -1.27
SYNE1-233ENST00000535896 LEKR1Q6ZMV7 388 aa7.1□□□□□ -1.27
SYNE1-233ENST00000535896 C2CD5Q86YS7 1000 aa7.1□□□□□ -1.27
SYNE1-233ENST00000535896 FAM114A1Q8IWE2 563 aa7.1□□□□□ -1.27
SYNE1-233ENST00000535896 SLF2Q8IX21 1173 aa7.1□□□□□ -1.27
SYNE1-233ENST00000535896 TRMT44Q8IYL2 757 aaKnown RBP7.1□□□□□ -1.27
SYNE1-233ENST00000535896 CCDC170Q8IYT3 715 aa7.1□□□□□ -1.27
SYNE1-233ENST00000535896 ENAHQ8N8S7 591 aaPredicted RBP7.1□□□□□ -1.27
SYNE1-233ENST00000535896 DAGLBQ8NCG7 672 aa7.1□□□□□ -1.27
SYNE1-233ENST00000535896 RPGRQ92834 1020 aaKnown RBP7.1□□□□□ -1.27
SYNE1-233ENST00000535896 MASTLQ96GX5 879 aa7.1□□□□□ -1.27
SYNE1-233ENST00000535896 MYL10Q9BUA6 226 aa7.1□□□□□ -1.27
SYNE1-233ENST00000535896 TSGA10Q9BZW7 698 aa7.1□□□□□ -1.27
SYNE1-233ENST00000535896 CDHR5Q9HBB8 845 aa7.1□□□□□ -1.27
SYNE1-233ENST00000535896 ARPP21Q9UBL0 812 aaPredicted RBP7.1□□□□□ -1.27
SYNE1-233ENST00000535896 ADAM21Q9UKJ8 722 aa7.1□□□□□ -1.27
SYNE1-233ENST00000535896 KCNJ14Q9UNX9 436 aa7.1□□□□□ -1.27
SYNE1-233ENST00000535896 ARIH1Q9Y4X5 557 aaPredicted RBP7.1□□□□□ -1.27
SYNE1-233ENST00000535896 ROBO3Q96MS0 1386 aa7.1□□□□□ -1.27
SYNE1-233ENST00000535896 BRCA1P38398 1863 aaKnown RBP7.1□□□□□ -1.27
SYNE1-233ENST00000535896 MAGEB6P1A0A0J9YX57 407 aa7.09□□□□□ -1.27
SYNE1-233ENST00000535896 A0A1W2PQJ5 194 aa7.09□□□□□ -1.27
SYNE1-233ENST00000535896 BICDL2A1A5D9 508 aa7.09□□□□□ -1.27
SYNE1-233ENST00000535896 LGALS16A8MUM7 142 aa7.09□□□□□ -1.27
SYNE1-233ENST00000535896 KCNJ18B7U540 433 aa7.09□□□□□ -1.27
SYNE1-233ENST00000535896 N4BP3O15049 544 aa7.09□□□□□ -1.27
SYNE1-233ENST00000535896 TEX33O43247 280 aa7.09□□□□□ -1.27
SYNE1-233ENST00000535896 KRT86O43790 486 aa7.09□□□□□ -1.27
SYNE1-233ENST00000535896 SEC31AO94979 1220 aaKnown RBP7.09□□□□□ -1.27
SYNE1-233ENST00000535896 IPO7O95373 1038 aaKnown RBP7.09□□□□□ -1.27
SYNE1-233ENST00000535896 COL1A1P02452 1464 aaPredicted RBP7.09□□□□□ -1.27
SYNE1-233ENST00000535896 SRGNP10124 158 aa7.09□□□□□ -1.27
SYNE1-233ENST00000535896 SCG2P13521 617 aa7.09□□□□□ -1.27
SYNE1-233ENST00000535896 DPEP1P16444 411 aa7.09□□□□□ -1.27
SYNE1-233ENST00000535896 ALDH1B1P30837 517 aa7.09□□□□□ -1.27
SYNE1-233ENST00000535896 HOXA10P31260 410 aaPredicted RBP7.09□□□□□ -1.27
SYNE1-233ENST00000535896 CYLC1P35663 651 aaPredicted RBP7.09□□□□□ -1.27
SYNE1-233ENST00000535896 XDHP47989 1333 aa7.09□□□□□ -1.27
SYNE1-233ENST00000535896 GNAQP50148 359 aa7.09□□□□□ -1.27
SYNE1-233ENST00000535896 DNM2P50570 870 aa7.09□□□□□ -1.27
SYNE1-233ENST00000535896 HNRNPH2P55795 449 aaKnown RBP7.09□□□□□ -1.27
SYNE1-233ENST00000535896 RAD51AP2Q09MP3 1159 aa7.09□□□□□ -1.27
SYNE1-233ENST00000535896 KCNJ12Q14500 433 aa7.09□□□□□ -1.27
SYNE1-233ENST00000535896 KARSQ15046 597 aaKnown RBP7.09□□□□□ -1.27
SYNE1-233ENST00000535896 NPY5RQ15761 445 aa7.09□□□□□ -1.27
SYNE1-233ENST00000535896 MEA1Q16626 185 aa7.09□□□□□ -1.27
SYNE1-233ENST00000535896 ZSCAN26Q16670 478 aa7.09□□□□□ -1.27
SYNE1-233ENST00000535896 PFKFB3Q16875 520 aaPredicted RBP7.09□□□□□ -1.27
SYNE1-233ENST00000535896 SBK1Q52WX2 424 aa7.09□□□□□ -1.27
SYNE1-233ENST00000535896 ZNF569Q5MCW4 686 aa7.09□□□□□ -1.27
SYNE1-233ENST00000535896 FOCADQ5VW36 1801 aa7.09□□□□□ -1.27
SYNE1-233ENST00000535896 PAPD7Q5XG87 772 aaKnown RBP7.09□□□□□ -1.27
SYNE1-233ENST00000535896 WWC2Q6AWC2 1192 aa7.09□□□□□ -1.27
SYNE1-233ENST00000535896 CTR9Q6PD62 1173 aa7.09□□□□□ -1.27
SYNE1-233ENST00000535896 TRAPPC11Q7Z392 1133 aa7.09□□□□□ -1.27
SYNE1-233ENST00000535896 ZNF572Q7Z3I7 529 aaPredicted RBP7.09□□□□□ -1.27
SYNE1-233ENST00000535896 CERS3Q8IU89 383 aa7.09□□□□□ -1.27
SYNE1-233ENST00000535896 CCDC24Q8N4L8 307 aa7.09□□□□□ -1.27
SYNE1-233ENST00000535896 GOLGA6L1Q8N7Z2 621 aa7.09□□□□□ -1.27
SYNE1-233ENST00000535896 OR8K1Q8NGG5 319 aa7.09□□□□□ -1.27
SYNE1-233ENST00000535896 CNKSR1Q969H4 720 aa7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms