RNA–Protein interactions for RNA: ENST00000535717.1

CHD4-203, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 2

Gene CHD4, Length 660 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-203ENST00000535717 PLXNA1Q9UIW2 1896 aa13.93□□□□□ -0.18
CHD4-203ENST00000535717 SOWAHBA6NEL2 793 aa13.92□□□□□ -0.18
CHD4-203ENST00000535717 DTNBO60941 627 aa13.92□□□□□ -0.18
CHD4-203ENST00000535717 CTDNEP1O95476 244 aa13.92□□□□□ -0.18
CHD4-203ENST00000535717 CALML3P27482 149 aa13.92□□□□□ -0.18
CHD4-203ENST00000535717 GHRHRQ02643 423 aa13.92□□□□□ -0.18
CHD4-203ENST00000535717 SSRP1Q08945 709 aaKnown RBP13.92□□□□□ -0.18
CHD4-203ENST00000535717 ST3GAL1Q11201 340 aa13.92□□□□□ -0.18
CHD4-203ENST00000535717 TRIM32Q13049 653 aa13.92□□□□□ -0.18
CHD4-203ENST00000535717 PFKFB3Q16875 520 aaPredicted RBP13.92□□□□□ -0.18
CHD4-203ENST00000535717 OLFML2BQ68BL8 750 aa13.92□□□□□ -0.18
CHD4-203ENST00000535717 CPLX2Q6PUV4 134 aaKnown RBP13.92□□□□□ -0.18
CHD4-203ENST00000535717 ZSCAN31Q96LW9 406 aaPredicted RBP13.92□□□□□ -0.18
CHD4-203ENST00000535717 MAF1Q9H063 256 aa13.92□□□□□ -0.18
CHD4-203ENST00000535717 ASTN1O14525 1302 aa13.91□□□□□ -0.18
CHD4-203ENST00000535717 STXBP3O00186 592 aa13.91□□□□□ -0.18
CHD4-203ENST00000535717 CDKL5O76039 1030 aa13.91□□□□□ -0.18
CHD4-203ENST00000535717 CFBP00751 764 aa13.91□□□□□ -0.18
CHD4-203ENST00000535717 HMGCRP04035 888 aa13.91□□□□□ -0.18
CHD4-203ENST00000535717 INHAP05111 366 aa13.91□□□□□ -0.18
CHD4-203ENST00000535717 SCG2P13521 617 aa13.91□□□□□ -0.18
CHD4-203ENST00000535717 HSD17B4P51659 736 aa13.91□□□□□ -0.18
CHD4-203ENST00000535717 AKAP17AQ02040 695 aaKnown RBP13.91□□□□□ -0.18
CHD4-203ENST00000535717 TYW1BQ6NUM6 668 aa13.91□□□□□ -0.18
CHD4-203ENST00000535717 ZNF467Q7Z7K2 595 aaPredicted RBP13.91□□□□□ -0.18
CHD4-203ENST00000535717 TNS4Q8IZW8 715 aa13.91□□□□□ -0.18
CHD4-203ENST00000535717 SYTL5Q8TDW5 730 aaPredicted RBP13.91□□□□□ -0.18
CHD4-203ENST00000535717 ARMC5Q96C12 935 aa13.91□□□□□ -0.18
CHD4-203ENST00000535717 BARHL2Q9NY43 387 aa13.91□□□□□ -0.18
CHD4-203ENST00000535717 COL20A1Q9P218 1284 aa13.91□□□□□ -0.18
CHD4-203ENST00000535717 RBM27Q9P2N5 1060 aaKnown RBP13.91□□□□□ -0.18
CHD4-203ENST00000535717 BIN2Q9UBW5 565 aaPredicted RBP13.91□□□□□ -0.18
CHD4-203ENST00000535717 LCTP09848 1927 aa13.91□□□□□ -0.18
CHD4-203ENST00000535717 RBBP6Q7Z6E9 1792 aaKnown RBP13.91□□□□□ -0.18
CHD4-203ENST00000535717 hCG_1984214I3L0E3 225 aa13.9□□□□□ -0.18
CHD4-203ENST00000535717 HOXA13P31271 388 aaPredicted RBP13.9□□□□□ -0.18
CHD4-203ENST00000535717 CYP2C19P33261 490 aa13.9□□□□□ -0.18
CHD4-203ENST00000535717 NAPAP54920 295 aa13.9□□□□□ -0.18
CHD4-203ENST00000535717 MFSD14CQ5VZR4 134 aa13.9□□□□□ -0.18
CHD4-203ENST00000535717 TRIM22Q8IYM9 498 aa13.9□□□□□ -0.18
CHD4-203ENST00000535717 ZNF713Q8N859 430 aaPredicted RBP13.9□□□□□ -0.18
CHD4-203ENST00000535717 ZNF333Q96JL9 665 aa13.9□□□□□ -0.18
CHD4-203ENST00000535717 TINF2Q9BSI4 451 aa13.9□□□□□ -0.18
CHD4-203ENST00000535717 SH2B1Q9NRF2 756 aaPredicted RBP13.9□□□□□ -0.18
CHD4-203ENST00000535717 GCOM1H8Y6P7 765 aaPredicted RBP13.89□□□□□ -0.19
CHD4-203ENST00000535717 DEXIO95424 95 aa13.89□□□□□ -0.19
CHD4-203ENST00000535717 POLR2MP0CAP2 368 aa13.89□□□□□ -0.19
CHD4-203ENST00000535717 MCM2P49736 904 aa13.89□□□□□ -0.19
CHD4-203ENST00000535717 CACNB2Q08289 660 aaPredicted RBP13.89□□□□□ -0.19
CHD4-203ENST00000535717 MAP3K21Q5TCX8 1036 aa13.89□□□□□ -0.19
CHD4-203ENST00000535717 PPP1R18Q6NYC8 613 aa13.89□□□□□ -0.19
CHD4-203ENST00000535717 MAMDC4Q6UXC1 1216 aa13.89□□□□□ -0.19
CHD4-203ENST00000535717 CCDC83Q8IWF9 413 aa13.89□□□□□ -0.19
CHD4-203ENST00000535717 SAMD3Q8N6K7 520 aa13.89□□□□□ -0.19
CHD4-203ENST00000535717 NSUN7Q8NE18 718 aaKnown RBP13.89□□□□□ -0.19
CHD4-203ENST00000535717 SHISA4Q96DD7 197 aa13.89□□□□□ -0.19
CHD4-203ENST00000535717 ABHD8Q96I13 439 aa13.89□□□□□ -0.19
CHD4-203ENST00000535717 TAAR1Q96RJ0 339 aa13.89□□□□□ -0.19
CHD4-203ENST00000535717 PSTPIP2Q9H939 334 aa13.89□□□□□ -0.19
CHD4-203ENST00000535717 MAP3K20Q9NYL2 800 aaKnown RBP13.89□□□□□ -0.19
CHD4-203ENST00000535717 DDX49Q9Y6V7 483 aaKnown RBP13.89□□□□□ -0.19
CHD4-203ENST00000535717 STK36Q9NRP7 1315 aa13.89□□□□□ -0.19
CHD4-203ENST00000535717 PIK3CDO00329 1044 aa13.88□□□□□ -0.19
CHD4-203ENST00000535717 MEIS2O14770 477 aa13.88□□□□□ -0.19
CHD4-203ENST00000535717 JAK2O60674 1132 aa13.88□□□□□ -0.19
CHD4-203ENST00000535717 SNAI1O95863 264 aaPredicted RBP13.88□□□□□ -0.19
CHD4-203ENST00000535717 MYCP01106 439 aaPredicted RBP13.88□□□□□ -0.19
CHD4-203ENST00000535717 PRKAR2AP13861 404 aaKnown RBP13.88□□□□□ -0.19
CHD4-203ENST00000535717 FDPSP14324 419 aaKnown RBP13.88□□□□□ -0.19
CHD4-203ENST00000535717 ALDH5A1P51649 535 aaPredicted RBP13.88□□□□□ -0.19
CHD4-203ENST00000535717 UBXN2AP68543 259 aa13.88□□□□□ -0.19
CHD4-203ENST00000535717 MTFR1Q15390 333 aa13.88□□□□□ -0.19
CHD4-203ENST00000535717 USP17L6PQ6QN14 398 aa13.88□□□□□ -0.19
CHD4-203ENST00000535717 MSL3Q8N5Y2 521 aaKnown RBP13.88□□□□□ -0.19
CHD4-203ENST00000535717 DNERQ8NFT8 737 aa13.88□□□□□ -0.19
CHD4-203ENST00000535717 TMX3Q96JJ7 454 aa13.88□□□□□ -0.19
CHD4-203ENST00000535717 AIFM3Q96NN9 605 aa13.88□□□□□ -0.19
CHD4-203ENST00000535717 ADD3Q9UEY8 706 aaKnown RBP13.88□□□□□ -0.19
CHD4-203ENST00000535717 SYNGAP1Q96PV0 1343 aa13.88□□□□□ -0.19
CHD4-203ENST00000535717 SMCO2A6NFE2 343 aa13.87□□□□□ -0.19
CHD4-203ENST00000535717 ASB14A6NK59 587 aa13.87□□□□□ -0.19
CHD4-203ENST00000535717 CCL5P13501 91 aa13.87□□□□□ -0.19
CHD4-203ENST00000535717 ADCY7P51828 1080 aa13.87□□□□□ -0.19
CHD4-203ENST00000535717 UBE2SQ16763 222 aa13.87□□□□□ -0.19
CHD4-203ENST00000535717 PRAMEF19Q5SWL8 479 aa13.87□□□□□ -0.19
CHD4-203ENST00000535717 ARMCX2Q7L311 632 aa13.87□□□□□ -0.19
CHD4-203ENST00000535717 FCHSD1Q86WN1 690 aa13.87□□□□□ -0.19
CHD4-203ENST00000535717 TRPV1Q8NER1 839 aa13.87□□□□□ -0.19
CHD4-203ENST00000535717 CUL5Q93034 780 aa13.87□□□□□ -0.19
CHD4-203ENST00000535717 RMDN3Q96TC7 470 aa13.87□□□□□ -0.19
CHD4-203ENST00000535717 LLPHQ9BRT6 129 aaKnown RBP13.87□□□□□ -0.19
CHD4-203ENST00000535717 UNC93B1Q9H1C4 597 aa13.87□□□□□ -0.19
CHD4-203ENST00000535717 RIC8AQ9NPQ8 531 aa13.87□□□□□ -0.19
CHD4-203ENST00000535717 SH3GLB2Q9NR46 395 aa13.87□□□□□ -0.19
CHD4-203ENST00000535717 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.87□□□□□ -0.19
CHD4-203ENST00000535717 VPS54Q9P1Q0 977 aa13.87□□□□□ -0.19
CHD4-203ENST00000535717 ORC3Q9UBD5 711 aaPredicted RBP13.87□□□□□ -0.19
CHD4-203ENST00000535717 MCM3APO60318 1980 aa13.87□□□□□ -0.19
CHD4-203ENST00000535717 LOC102724159A0A0B4J2E5 919 aa13.86□□□□□ -0.19
CHD4-203ENST00000535717 ESYT2A0FGR8 921 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms