RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 PAWRQ96IZ0 340 aaKnown RBP15.06■□□□□ 0
VPS28-216ENST00000533806 COL20A1Q9P218 1284 aa15.06■□□□□ 0
VPS28-216ENST00000533806 PCDHA1Q9Y5I3 950 aa15.06■□□□□ 0
VPS28-216ENST00000533806 DDX49Q9Y6V7 483 aaKnown RBP15.06■□□□□ 0
VPS28-216ENST00000533806 PLXNA1Q9UIW2 1896 aa15.06■□□□□ 0
VPS28-216ENST00000533806 KLF18A0A0U1RQI7 1052 aa15.05■□□□□ -0
VPS28-216ENST00000533806 PTPDC1A2A3K4 754 aa15.05■□□□□ -0
VPS28-216ENST00000533806 ADCY6O43306 1168 aa15.05■□□□□ -0
VPS28-216ENST00000533806 ALDH5A1P51649 535 aaPredicted RBP15.05■□□□□ -0
VPS28-216ENST00000533806 TAPT1Q6NXT6 567 aa15.05■□□□□ -0
VPS28-216ENST00000533806 MICU3Q86XE3 530 aa15.05■□□□□ -0
VPS28-216ENST00000533806 HOMER1Q86YM7 354 aa15.05■□□□□ -0
VPS28-216ENST00000533806 MCF2L2Q86YR7 1114 aa15.05■□□□□ -0
VPS28-216ENST00000533806 CMTR1Q8N1G2 835 aaKnown RBP15.05■□□□□ -0
VPS28-216ENST00000533806 SAMD3Q8N6K7 520 aa15.05■□□□□ -0
VPS28-216ENST00000533806 DNERQ8NFT8 737 aa15.05■□□□□ -0
VPS28-216ENST00000533806 SYTL5Q8TDW5 730 aaPredicted RBP15.05■□□□□ -0
VPS28-216ENST00000533806 BRF1Q92994 677 aa15.05■□□□□ -0
VPS28-216ENST00000533806 MAP3K20Q9NYL2 800 aaKnown RBP15.05■□□□□ -0
VPS28-216ENST00000533806 ADD3Q9UEY8 706 aaKnown RBP15.05■□□□□ -0
VPS28-216ENST00000533806 DNAH12Q6ZR08 3092 aa15.04■□□□□ -0
VPS28-216ENST00000533806 LCTP09848 1927 aa15.04■□□□□ -0
VPS28-216ENST00000533806 NID2Q14112 1375 aa15.04■□□□□ -0
VPS28-216ENST00000533806 ZBTB43O43298 467 aa15.04■□□□□ -0
VPS28-216ENST00000533806 AKR1A1P14550 325 aa15.04■□□□□ -0
VPS28-216ENST00000533806 CALML3P27482 149 aa15.04■□□□□ -0
VPS28-216ENST00000533806 CDC27P30260 824 aa15.04■□□□□ -0
VPS28-216ENST00000533806 ANAPC15P60006 121 aa15.04■□□□□ -0
VPS28-216ENST00000533806 APOBRQ0VD83 1088 aa15.04■□□□□ -0
VPS28-216ENST00000533806 TRAF1Q13077 416 aa15.04■□□□□ -0
VPS28-216ENST00000533806 TOB2Q14106 344 aaPredicted RBP15.04■□□□□ -0
VPS28-216ENST00000533806 C8orf34Q49A92 452 aa15.04■□□□□ -0
VPS28-216ENST00000533806 SYNE3Q6ZMZ3 975 aa15.04■□□□□ -0
VPS28-216ENST00000533806 RRP36Q96EU6 259 aaKnown RBP15.04■□□□□ -0
VPS28-216ENST00000533806 RBM28Q9NW13 759 aaKnown RBP15.04■□□□□ -0
VPS28-216ENST00000533806 FAM184BQ9ULE4 1060 aa15.04■□□□□ -0
VPS28-216ENST00000533806 NKX3-2P78367 333 aa15.03■□□□□ -0
VPS28-216ENST00000533806 PPP2R5BQ15173 497 aa15.03■□□□□ -0
VPS28-216ENST00000533806 CCDC144BQ3MJ40 725 aa15.03■□□□□ -0
VPS28-216ENST00000533806 ANO1Q5XXA6 986 aa15.03■□□□□ -0
VPS28-216ENST00000533806 NECAB2Q7Z6G3 386 aa15.03■□□□□ -0
VPS28-216ENST00000533806 TAAR1Q96RJ0 339 aa15.03■□□□□ -0
VPS28-216ENST00000533806 CYP46A1Q9Y6A2 500 aa15.03■□□□□ -0
VPS28-216ENST00000533806 PDE4DIPQ5VU43 2346 aa15.03■□□□□ -0
VPS28-216ENST00000533806 CNTNAP5Q8WYK1 1306 aa15.02■□□□□ -0
VPS28-216ENST00000533806 RBM47A0AV96 593 aaKnown RBP15.02■□□□□ -0
VPS28-216ENST00000533806 DNM1LO00429 736 aa15.02■□□□□ -0
VPS28-216ENST00000533806 EIF5BO60841 1220 aaKnown RBP15.02■□□□□ -0
VPS28-216ENST00000533806 ADAMTS4O75173 837 aa15.02■□□□□ -0
VPS28-216ENST00000533806 DUSP11O75319 330 aaKnown RBP15.02■□□□□ -0
VPS28-216ENST00000533806 RARBP10826 455 aa15.02■□□□□ -0
VPS28-216ENST00000533806 ADD1P35611 737 aaKnown RBP15.02■□□□□ -0
VPS28-216ENST00000533806 LRRC41Q15345 812 aa15.02■□□□□ -0
VPS28-216ENST00000533806 RTN1Q16799 776 aa15.02■□□□□ -0
VPS28-216ENST00000533806 CCSAPQ6IQ19 270 aaPredicted RBP15.02■□□□□ -0
VPS28-216ENST00000533806 CCDC82Q8N4S0 544 aa15.02■□□□□ -0
VPS28-216ENST00000533806 ARRDC4Q8NCT1 418 aa15.02■□□□□ -0
VPS28-216ENST00000533806 LENG1Q96BZ8 264 aaPredicted RBP15.02■□□□□ -0
VPS28-216ENST00000533806 UPF3BQ9BZI7 483 aaKnown RBP15.02■□□□□ -0
VPS28-216ENST00000533806 ALDH8A1Q9H2A2 487 aaPredicted RBP15.02■□□□□ -0
VPS28-216ENST00000533806 VTA1Q9NP79 307 aa15.02■□□□□ -0
VPS28-216ENST00000533806 XPNPEP3Q9NQH7 507 aa15.02■□□□□ -0
VPS28-216ENST00000533806 PDGFCQ9NRA1 345 aa15.02■□□□□ -0
VPS28-216ENST00000533806 ZHX1Q9UKY1 873 aaPredicted RBP15.02■□□□□ -0
VPS28-216ENST00000533806 GNEQ9Y223 722 aaKnown RBP15.02■□□□□ -0
VPS28-216ENST00000533806 C11orf97A0A1B0GVM6 126 aaPredicted RBP15.01□□□□□ -0.01
VPS28-216ENST00000533806 GOLGA8AA7E2F4 631 aa15.01□□□□□ -0.01
VPS28-216ENST00000533806 GOLGA8BA8MQT2 603 aa15.01□□□□□ -0.01
VPS28-216ENST00000533806 CTAGE5O15320 804 aa15.01□□□□□ -0.01
VPS28-216ENST00000533806 CFBP00751 764 aa15.01□□□□□ -0.01
VPS28-216ENST00000533806 PDIA3P30101 505 aaKnown RBP15.01□□□□□ -0.01
VPS28-216ENST00000533806 TMEM63BQ5T3F8 832 aa15.01□□□□□ -0.01
VPS28-216ENST00000533806 IQSEC1Q6DN90 963 aa15.01□□□□□ -0.01
VPS28-216ENST00000533806 KLHDC9Q8NEP7 349 aa15.01□□□□□ -0.01
VPS28-216ENST00000533806 NSUN6Q8TEA1 469 aaKnown RBP15.01□□□□□ -0.01
VPS28-216ENST00000533806 PIBF1Q8WXW3 757 aa15.01□□□□□ -0.01
VPS28-216ENST00000533806 IWS1Q96ST2 819 aa15.01□□□□□ -0.01
VPS28-216ENST00000533806 UPF3AQ9H1J1 476 aaKnown RBP15.01□□□□□ -0.01
VPS28-216ENST00000533806 C11orf49Q9H6J7 331 aa15.01□□□□□ -0.01
VPS28-216ENST00000533806 BAZ2BQ9UIF8 2168 aaKnown RBP15.01□□□□□ -0.01
VPS28-216ENST00000533806 SYNRGQ9UMZ2 1314 aa15□□□□□ -0.01
VPS28-216ENST00000533806 hCG_1642624A0A1W2PR95 340 aa15□□□□□ -0.01
VPS28-216ENST00000533806 MEIS2O14770 477 aa15□□□□□ -0.01
VPS28-216ENST00000533806 PGK1P00558 417 aa15□□□□□ -0.01
VPS28-216ENST00000533806 CST5P28325 142 aaPredicted RBP15□□□□□ -0.01
VPS28-216ENST00000533806 ADCYAP1R1P41586 468 aa15□□□□□ -0.01
VPS28-216ENST00000533806 GJA9P57773 515 aa15□□□□□ -0.01
VPS28-216ENST00000533806 FGD1P98174 961 aa15□□□□□ -0.01
VPS28-216ENST00000533806 NTRK3Q16288 839 aa15□□□□□ -0.01
VPS28-216ENST00000533806 GJC2Q5T442 439 aaPredicted RBP15□□□□□ -0.01
VPS28-216ENST00000533806 EEPD1Q7L9B9 569 aa15□□□□□ -0.01
VPS28-216ENST00000533806 FBXO16Q8IX29 292 aaPredicted RBP15□□□□□ -0.01
VPS28-216ENST00000533806 ZNF274Q96GC6 653 aaPredicted RBP15□□□□□ -0.01
VPS28-216ENST00000533806 RMDN3Q96TC7 470 aa15□□□□□ -0.01
VPS28-216ENST00000533806 HTATIP2Q9BUP3 242 aa15□□□□□ -0.01
VPS28-216ENST00000533806 PXMP2Q9NR77 195 aa15□□□□□ -0.01
VPS28-216ENST00000533806 SEC63Q9UGP8 760 aaKnown RBP15□□□□□ -0.01
VPS28-216ENST00000533806 GCOM1H8Y6P7 765 aaPredicted RBP14.99□□□□□ -0.01
VPS28-216ENST00000533806 PIK3CDO00329 1044 aa14.99□□□□□ -0.01
VPS28-216ENST00000533806 POLR2MP0CAP2 368 aa14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms