RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 TEKT1Q969V4 418 aa6.4□□□□□ -1.38
CD44-236ENST00000533222 VWCEQ96DN2 955 aa6.4□□□□□ -1.38
CD44-236ENST00000533222 SENP7Q9BQF6 1050 aa6.4□□□□□ -1.38
CD44-236ENST00000533222 PRKAG3Q9UGI9 489 aa6.4□□□□□ -1.38
CD44-236ENST00000533222 GTF2IRD1Q9UHL9 959 aa6.4□□□□□ -1.38
CD44-236ENST00000533222 CEP162Q5TB80 1403 aa6.4□□□□□ -1.39
CD44-236ENST00000533222 CEP164Q9UPV0 1460 aa6.4□□□□□ -1.39
CD44-236ENST00000533222 CLEC3AO75596 197 aa6.39□□□□□ -1.39
CD44-236ENST00000533222 CEACAM5P06731 702 aa6.39□□□□□ -1.39
CD44-236ENST00000533222 CT47B1P0C2W7 299 aaPredicted RBP6.39□□□□□ -1.39
CD44-236ENST00000533222 CCDC159P0C7I6 412 aa6.39□□□□□ -1.39
CD44-236ENST00000533222 SSTR4P31391 388 aa6.39□□□□□ -1.39
CD44-236ENST00000533222 ETV3P41162 512 aa6.39□□□□□ -1.39
CD44-236ENST00000533222 MAGEA9P43362 315 aa6.39□□□□□ -1.39
CD44-236ENST00000533222 POU5F1Q01860 360 aaKnown RBP6.39□□□□□ -1.39
CD44-236ENST00000533222 NKPD1Q17RQ9 610 aa6.39□□□□□ -1.39
CD44-236ENST00000533222 MSMPQ1L6U9 139 aa6.39□□□□□ -1.39
CD44-236ENST00000533222 ZFYVE27Q5T4F4 411 aa6.39□□□□□ -1.39
CD44-236ENST00000533222 NBPF12Q5TAG4 269 aaPredicted RBP6.39□□□□□ -1.39
CD44-236ENST00000533222 INTS3Q68E01 1043 aaKnown RBP6.39□□□□□ -1.39
CD44-236ENST00000533222 IQCF2Q8IXL9 164 aa6.39□□□□□ -1.39
CD44-236ENST00000533222 AMOTL1Q8IY63 956 aa6.39□□□□□ -1.39
CD44-236ENST00000533222 CELF2-AS1Q8N7Q2 184 aa6.39□□□□□ -1.39
CD44-236ENST00000533222 PDILTQ8N807 584 aa6.39□□□□□ -1.39
CD44-236ENST00000533222 C19orf47Q8N9M1 422 aaKnown RBP6.39□□□□□ -1.39
CD44-236ENST00000533222 ATL2Q8NHH9 583 aa6.39□□□□□ -1.39
CD44-236ENST00000533222 TDRD7Q8NHU6 1098 aaKnown RBP6.39□□□□□ -1.39
CD44-236ENST00000533222 CCDC26Q8TAB7 109 aa6.39□□□□□ -1.39
CD44-236ENST00000533222 RNF141Q8WVD5 230 aa6.39□□□□□ -1.39
CD44-236ENST00000533222 CHMP4CQ96CF2 233 aa6.39□□□□□ -1.39
CD44-236ENST00000533222 PANK2Q9BZ23 570 aa6.39□□□□□ -1.39
CD44-236ENST00000533222 C22orf23Q9BZE7 217 aa6.39□□□□□ -1.39
CD44-236ENST00000533222 METTL14Q9HCE5 456 aaKnown RBP6.39□□□□□ -1.39
CD44-236ENST00000533222 ACTR10Q9NZ32 417 aa6.39□□□□□ -1.39
CD44-236ENST00000533222 CAPN6Q9Y6Q1 641 aa6.39□□□□□ -1.39
CD44-236ENST00000533222 RRBP1Q9P2E9 1410 aaKnown RBP6.39□□□□□ -1.39
CD44-236ENST00000533222 WASH4PA8MWX3 477 aa6.38□□□□□ -1.39
CD44-236ENST00000533222 IGF2BP3O00425 579 aaKnown RBP eCLIP6.38□□□□□ -1.39
CD44-236ENST00000533222 KLF4O43474 513 aa6.38□□□□□ -1.39
CD44-236ENST00000533222 STK10O94804 968 aaKnown RBP6.38□□□□□ -1.39
CD44-236ENST00000533222 TP53P04637 393 aaPredicted RBP6.38□□□□□ -1.39
CD44-236ENST00000533222 ZNF865P0CJ78 1059 aaPredicted RBP6.38□□□□□ -1.39
CD44-236ENST00000533222 SKILP12757 684 aa6.38□□□□□ -1.39
CD44-236ENST00000533222 CASP7P55210 303 aa6.38□□□□□ -1.39
CD44-236ENST00000533222 TNK2Q07912 1038 aa6.38□□□□□ -1.39
CD44-236ENST00000533222 NOLC1Q14978 699 aaKnown RBP eCLIP6.38□□□□□ -1.39
CD44-236ENST00000533222 RBBP5Q15291 538 aaKnown RBP6.38□□□□□ -1.39
CD44-236ENST00000533222 LARP1BQ659C4 914 aaKnown RBP6.38□□□□□ -1.39
CD44-236ENST00000533222 ZNF746Q6NUN9 644 aaPredicted RBP6.38□□□□□ -1.39
CD44-236ENST00000533222 CAVIN1Q6NZI2 390 aaKnown RBP6.38□□□□□ -1.39
CD44-236ENST00000533222 ARHGAP27Q6ZUM4 889 aa6.38□□□□□ -1.39
CD44-236ENST00000533222 MYOCDQ8IZQ8 938 aa6.38□□□□□ -1.39
CD44-236ENST00000533222 MFSD4AQ8N468 514 aa6.38□□□□□ -1.39
CD44-236ENST00000533222 DTWD2Q8NBA8 298 aa6.38□□□□□ -1.39
CD44-236ENST00000533222 PPM1EQ8WY54 764 aa6.38□□□□□ -1.39
CD44-236ENST00000533222 KLHL6Q8WZ60 621 aa6.38□□□□□ -1.39
CD44-236ENST00000533222 FAM107BQ9H098 131 aa6.38□□□□□ -1.39
CD44-236ENST00000533222 SLKQ9H2G2 1235 aaPredicted RBP6.38□□□□□ -1.39
CD44-236ENST00000533222 PSD3Q9NYI0 1048 aa6.38□□□□□ -1.39
CD44-236ENST00000533222 SUCOQ9UBS9 1254 aaKnown RBP6.38□□□□□ -1.39
CD44-236ENST00000533222 ITGB1BP2Q9UKP3 347 aa6.38□□□□□ -1.39
CD44-236ENST00000533222 ODF2LQ9ULJ1 636 aa6.38□□□□□ -1.39
CD44-236ENST00000533222 RNF112Q9ULX5 631 aa6.38□□□□□ -1.39
CD44-236ENST00000533222 MIA2Q96PC5 1412 aa6.38□□□□□ -1.39
CD44-236ENST00000533222 SHISA3A0PJX4 238 aa6.37□□□□□ -1.39
CD44-236ENST00000533222 GNAT3A8MTJ3 354 aa6.37□□□□□ -1.39
CD44-236ENST00000533222 IQCJ-SCHIP1C9J366 451 aaPredicted RBP6.37□□□□□ -1.39
CD44-236ENST00000533222 SHOXO15266 292 aa6.37□□□□□ -1.39
CD44-236ENST00000533222 ERLIN1O75477 346 aa6.37□□□□□ -1.39
CD44-236ENST00000533222 TPM1P09493 284 aa6.37□□□□□ -1.39
CD44-236ENST00000533222 HARSP12081 509 aaKnown RBP6.37□□□□□ -1.39
CD44-236ENST00000533222 YY1P25490 414 aa6.37□□□□□ -1.39
CD44-236ENST00000533222 RDXP35241 583 aaKnown RBP6.37□□□□□ -1.39
CD44-236ENST00000533222 CD96P40200 585 aa6.37□□□□□ -1.39
CD44-236ENST00000533222 CCNFP41002 786 aa6.37□□□□□ -1.39
CD44-236ENST00000533222 PMS1P54277 932 aaKnown RBP6.37□□□□□ -1.39
CD44-236ENST00000533222 NAP1L1P55209 391 aaKnown RBP6.37□□□□□ -1.39
CD44-236ENST00000533222 INHBEP58166 350 aa6.37□□□□□ -1.39
CD44-236ENST00000533222 GPS2Q13227 327 aa6.37□□□□□ -1.39
CD44-236ENST00000533222 CRYMQ14894 314 aa6.37□□□□□ -1.39
CD44-236ENST00000533222 CPSF6Q16630 551 aaKnown RBP eCLIP6.37□□□□□ -1.39
CD44-236ENST00000533222 TTC31Q49AM3 519 aaPredicted RBP6.37□□□□□ -1.39
CD44-236ENST00000533222 SOGA3Q5TF21 947 aa6.37□□□□□ -1.39
CD44-236ENST00000533222 CDKAL1Q5VV42 579 aa6.37□□□□□ -1.39
CD44-236ENST00000533222 DCAF15Q66K64 600 aa6.37□□□□□ -1.39
CD44-236ENST00000533222 NFXL1Q6ZNB6 911 aa6.37□□□□□ -1.39
CD44-236ENST00000533222 MMS22LQ6ZRQ5 1243 aa6.37□□□□□ -1.39
CD44-236ENST00000533222 C22orf34Q6ZV56 151 aa6.37□□□□□ -1.39
CD44-236ENST00000533222 TRIM74Q86UV6 250 aa6.37□□□□□ -1.39
CD44-236ENST00000533222 TRIM73Q86UV7 250 aa6.37□□□□□ -1.39
CD44-236ENST00000533222 RPUSD2Q8IZ73 545 aaKnown RBP6.37□□□□□ -1.39
CD44-236ENST00000533222 ASPNQ9BXN1 380 aa6.37□□□□□ -1.39
CD44-236ENST00000533222 TRIM7Q9C029 511 aa6.37□□□□□ -1.39
CD44-236ENST00000533222 MKRN2Q9H000 416 aaKnown RBP6.37□□□□□ -1.39
CD44-236ENST00000533222 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.37□□□□□ -1.39
CD44-236ENST00000533222 HOMER3Q9NSC5 361 aa6.37□□□□□ -1.39
CD44-236ENST00000533222 QPCTLQ9NXS2 382 aa6.37□□□□□ -1.39
CD44-236ENST00000533222 CTNNA3Q9UI47 895 aa6.37□□□□□ -1.39
CD44-236ENST00000533222 ZNF214Q9UL59 606 aaPredicted RBP6.37□□□□□ -1.39
CD44-236ENST00000533222 MINPP1Q9UNW1 487 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms