RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), human

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-233	ENST00000531141	NOTO	A8MTQ0	251 aa		5.72	□□□□□ -1.49
CD44-233	ENST00000531141	DLX3	O60479	287 aa		5.72	□□□□□ -1.49
CD44-233	ENST00000531141	FAM153B	P0C7A2	387 aa		5.72	□□□□□ -1.49
CD44-233	ENST00000531141	TRHR	P34981	398 aa	Predicted RBP	5.72	□□□□□ -1.49
CD44-233	ENST00000531141	LTBR	P36941	435 aa		5.72	□□□□□ -1.49
CD44-233	ENST00000531141	YOD1	Q5VVQ6	348 aa	Predicted RBP	5.72	□□□□□ -1.49
CD44-233	ENST00000531141	DIO2	Q92813	273 aa		5.72	□□□□□ -1.49
CD44-233	ENST00000531141	RNF32	Q9H0A6	362 aa		5.72	□□□□□ -1.49
CD44-233	ENST00000531141	C19orf44	Q9H6X5	657 aa		5.72	□□□□□ -1.49
CD44-233	ENST00000531141	CRTAC1	Q9NQ79	661 aa		5.72	□□□□□ -1.49
CD44-233	ENST00000531141	GPRC5C	Q9NQ84	441 aa		5.72	□□□□□ -1.49
CD44-233	ENST00000531141	IMPACT	Q9P2X3	320 aa		5.72	□□□□□ -1.49
CD44-233	ENST00000531141	ACSL6	Q9UKU0	697 aa		5.72	□□□□□ -1.49
CD44-233	ENST00000531141	CCDC163	A0A0D9SF12	145 aa		5.71	□□□□□ -1.5
CD44-233	ENST00000531141	MYO1B	O43795	1136 aa		5.71	□□□□□ -1.5
CD44-233	ENST00000531141	NPHS1	O60500	1241 aa		5.71	□□□□□ -1.5
CD44-233	ENST00000531141	GLI1	P08151	1106 aa		5.71	□□□□□ -1.5
CD44-233	ENST00000531141	FYB2	Q5VWT5	728 aa		5.71	□□□□□ -1.5
CD44-233	ENST00000531141	MCTP1	Q6DN14	999 aa		5.71	□□□□□ -1.5
CD44-233	ENST00000531141	SCUBE1	Q8IWY4	988 aa		5.71	□□□□□ -1.5
CD44-233	ENST00000531141	LILRB2	Q8N423	598 aa		5.71	□□□□□ -1.5
CD44-233	ENST00000531141	NUP43	Q8NFH3	380 aa		5.71	□□□□□ -1.5
CD44-233	ENST00000531141	SH3TC2	Q8TF17	1288 aa		5.71	□□□□□ -1.5
CD44-233	ENST00000531141	FAM168A	Q92567	244 aa		5.71	□□□□□ -1.5
CD44-233	ENST00000531141	EXOC2	Q96KP1	924 aa		5.71	□□□□□ -1.5
CD44-233	ENST00000531141	PLCD4	Q9BRC7	762 aa		5.71	□□□□□ -1.5
CD44-233	ENST00000531141	SLC6A17	Q9H1V8	727 aa		5.71	□□□□□ -1.5
CD44-233	ENST00000531141	YBX2	Q9Y2T7	364 aa	Known RBP	5.71	□□□□□ -1.5
CD44-233	ENST00000531141		A0A1W2PQ27	194 aa		5.7	□□□□□ -1.5
CD44-233	ENST00000531141		A0A1W2PQ64	194 aa		5.7	□□□□□ -1.5
CD44-233	ENST00000531141		A0A1W2PQC6	194 aa		5.7	□□□□□ -1.5
CD44-233	ENST00000531141		A0A1W2PQD8	194 aa		5.7	□□□□□ -1.5
CD44-233	ENST00000531141	PSPN	O60542	156 aa		5.7	□□□□□ -1.5
CD44-233	ENST00000531141	EFEMP2	O95967	443 aa		5.7	□□□□□ -1.5
CD44-233	ENST00000531141	PNLIP	P16233	465 aa		5.7	□□□□□ -1.5
CD44-233	ENST00000531141	PRKCA	P17252	672 aa		5.7	□□□□□ -1.5
CD44-233	ENST00000531141	FOXB2	Q5VYV0	432 aa		5.7	□□□□□ -1.5
CD44-233	ENST00000531141	MBLAC2	Q68D91	279 aa		5.7	□□□□□ -1.5
CD44-233	ENST00000531141	DENND5A	Q6IQ26	1287 aa		5.7	□□□□□ -1.5
CD44-233	ENST00000531141	RSPO2	Q6UXX9	243 aa	Predicted RBP	5.7	□□□□□ -1.5
CD44-233	ENST00000531141	USP53	Q70EK8	1073 aa		5.7	□□□□□ -1.5
CD44-233	ENST00000531141	CPNE8	Q86YQ8	564 aa		5.7	□□□□□ -1.5
CD44-233	ENST00000531141	CCDC103	Q8IW40	242 aa		5.7	□□□□□ -1.5
CD44-233	ENST00000531141	NLGN2	Q8NFZ4	835 aa		5.7	□□□□□ -1.5
CD44-233	ENST00000531141	DCAF4	Q8WV16	495 aa		5.7	□□□□□ -1.5
CD44-233	ENST00000531141	SHISA4	Q96DD7	197 aa		5.7	□□□□□ -1.5
CD44-233	ENST00000531141	ASIC4	Q96FT7	647 aa		5.7	□□□□□ -1.5
CD44-233	ENST00000531141	MRPS23	Q9Y3D9	190 aa	Known RBP	5.7	□□□□□ -1.5
CD44-233	ENST00000531141	NPFFR2	Q9Y5X5	522 aa		5.7	□□□□□ -1.5
CD44-233	ENST00000531141	ARL4A	P40617	200 aa		5.69	□□□□□ -1.5
CD44-233	ENST00000531141	GTF2A2	P52657	109 aa		5.69	□□□□□ -1.5
CD44-233	ENST00000531141	RPL11	P62913	178 aa	Known RBP	5.69	□□□□□ -1.5
CD44-233	ENST00000531141	NTRK3	Q16288	839 aa		5.69	□□□□□ -1.5
CD44-233	ENST00000531141	FAM209A	Q5JX71	171 aa		5.69	□□□□□ -1.5
CD44-233	ENST00000531141	STYK1	Q6J9G0	422 aa		5.69	□□□□□ -1.5
CD44-233	ENST00000531141	MAMDC2	Q7Z304	686 aa	Predicted RBP	5.69	□□□□□ -1.5
CD44-233	ENST00000531141	JAZF1	Q86VZ6	243 aa		5.69	□□□□□ -1.5
CD44-233	ENST00000531141	IRF2BP1	Q8IU81	584 aa		5.69	□□□□□ -1.5
CD44-233	ENST00000531141	KISS1R	Q969F8	398 aa	Predicted RBP	5.69	□□□□□ -1.5
CD44-233	ENST00000531141	INTS4	Q96HW7	963 aa	Known RBP	5.69	□□□□□ -1.5
CD44-233	ENST00000531141	RNPC3	Q96LT9	517 aa	Known RBP	5.69	□□□□□ -1.5
CD44-233	ENST00000531141	ZFYVE21	Q9BQ24	234 aa		5.69	□□□□□ -1.5
CD44-233	ENST00000531141	DHRS4	Q9BTZ2	278 aa		5.69	□□□□□ -1.5
CD44-233	ENST00000531141	TNFRSF12A	Q9NP84	129 aa		5.69	□□□□□ -1.5
CD44-233	ENST00000531141	PDLIM7	Q9NR12	457 aa		5.69	□□□□□ -1.5
CD44-233	ENST00000531141	GPR27	Q9NS67	375 aa		5.69	□□□□□ -1.5
CD44-233	ENST00000531141	TMEM260	Q9NX78	707 aa		5.69	□□□□□ -1.5
CD44-233	ENST00000531141	TMA7	Q9Y2S6	64 aa	Known RBP	5.69	□□□□□ -1.5
CD44-233	ENST00000531141	TBX22	Q9Y458	520 aa		5.69	□□□□□ -1.5
CD44-233	ENST00000531141	C7orf72	A4D263	438 aa		5.68	□□□□□ -1.5
CD44-233	ENST00000531141	SRGAP3	O43295	1099 aa		5.68	□□□□□ -1.5
CD44-233	ENST00000531141	TAL1	P17542	331 aa	Predicted RBP	5.68	□□□□□ -1.5
CD44-233	ENST00000531141	CYP4F8	P98187	520 aa		5.68	□□□□□ -1.5
CD44-233	ENST00000531141	MVK	Q03426	396 aa		5.68	□□□□□ -1.5
CD44-233	ENST00000531141	SQSTM1	Q13501	440 aa		5.68	□□□□□ -1.5
CD44-233	ENST00000531141	INF2	Q27J81	1249 aa		5.68	□□□□□ -1.5
CD44-233	ENST00000531141	CABP7	Q86V35	215 aa		5.68	□□□□□ -1.5
CD44-233	ENST00000531141		Q8N1Y9	231 aa		5.68	□□□□□ -1.5
CD44-233	ENST00000531141	PHF20	Q9BVI0	1012 aa		5.68	□□□□□ -1.5
CD44-233	ENST00000531141	KRTAP4-7	Q9BYR0	210 aa		5.68	□□□□□ -1.5
CD44-233	ENST00000531141	IGF2BP1	Q9NZI8	577 aa	Known RBP eCLIP	5.68	□□□□□ -1.5
CD44-233	ENST00000531141	GULP1	Q9UBP9	304 aa		5.68	□□□□□ -1.5
CD44-233	ENST00000531141	TMEFF2	Q9UIK5	374 aa	Predicted RBP	5.68	□□□□□ -1.5
CD44-233	ENST00000531141	MRPL42	Q9Y6G3	142 aa	Known RBP	5.68	□□□□□ -1.5
CD44-233	ENST00000531141	CARMIL2	Q6F5E8	1435 aa		5.67	□□□□□ -1.5
CD44-233	ENST00000531141		A0A1W2PQJ5	194 aa		5.67	□□□□□ -1.5
CD44-233	ENST00000531141	C6orf222	P0C671	652 aa	Predicted RBP	5.67	□□□□□ -1.5
CD44-233	ENST00000531141	MSL3P1	P0C860	447 aa		5.67	□□□□□ -1.5
CD44-233	ENST00000531141	ERVFRD-1	P60508	538 aa		5.67	□□□□□ -1.5
CD44-233	ENST00000531141	GABRE	P78334	506 aa		5.67	□□□□□ -1.5
CD44-233	ENST00000531141	HOMER1	Q86YM7	354 aa		5.67	□□□□□ -1.5
CD44-233	ENST00000531141	SYNPO	Q8N3V7	929 aa		5.67	□□□□□ -1.5
CD44-233	ENST00000531141	LZTR1	Q8N653	840 aa		5.67	□□□□□ -1.5
CD44-233	ENST00000531141	RCBTB1	Q8NDN9	531 aa		5.67	□□□□□ -1.5
CD44-233	ENST00000531141	PUM2	Q8TB72	1066 aa	Known RBP eCLIP	5.67	□□□□□ -1.5
CD44-233	ENST00000531141	PTPRN2	Q92932	1015 aa		5.67	□□□□□ -1.5
CD44-233	ENST00000531141	MRPL4	Q9BYD3	311 aa	Known RBP	5.67	□□□□□ -1.5
CD44-233	ENST00000531141	FAM53C	Q9NYF3	392 aa		5.67	□□□□□ -1.5
CD44-233	ENST00000531141	SFMBT1	Q9UHJ3	866 aa		5.67	□□□□□ -1.5
CD44-233	ENST00000531141	RWDD3	Q9Y3V2	267 aa		5.67	□□□□□ -1.5

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