RNA–Protein interactions for RNA: ENST00000529563.5

USH1C-208, Transcript of USH1 protein network component harmonin, humanhuman

TSL 2

Gene USH1C, Length 942 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-208ENST00000529563 B4DLN1 442 aa14.27□□□□□ -0.13
USH1C-208ENST00000529563 FGAP02671 866 aa14.27□□□□□ -0.13
USH1C-208ENST00000529563 PBX2P40425 430 aa14.27□□□□□ -0.13
USH1C-208ENST00000529563 CPT1AP50416 773 aa14.27□□□□□ -0.13
USH1C-208ENST00000529563 ALDH5A1P51649 535 aaPredicted RBP14.27□□□□□ -0.13
USH1C-208ENST00000529563 MRPL12P52815 198 aaKnown RBP14.27□□□□□ -0.13
USH1C-208ENST00000529563 CHMP4BP1P59074 171 aa14.27□□□□□ -0.13
USH1C-208ENST00000529563 FAM47CQ5HY64 1035 aa14.27□□□□□ -0.13
USH1C-208ENST00000529563 TAPT1Q6NXT6 567 aa14.27□□□□□ -0.13
USH1C-208ENST00000529563 RNF207Q6ZRF8 634 aa14.27□□□□□ -0.13
USH1C-208ENST00000529563 C16orf59Q7L2K0 433 aa14.27□□□□□ -0.13
USH1C-208ENST00000529563 OTOP2Q7RTS6 562 aa14.27□□□□□ -0.13
USH1C-208ENST00000529563 OR6J1Q8NGC5 347 aa14.27□□□□□ -0.13
USH1C-208ENST00000529563 PURBQ96QR8 312 aaKnown RBP14.27□□□□□ -0.13
USH1C-208ENST00000529563 TRPV6Q9H1D0 765 aa14.27□□□□□ -0.13
USH1C-208ENST00000529563 RNF41Q9H4P4 317 aaPredicted RBP14.27□□□□□ -0.13
USH1C-208ENST00000529563 NFIBO00712 420 aa14.26□□□□□ -0.13
USH1C-208ENST00000529563 FOXP2O15409 715 aa14.26□□□□□ -0.13
USH1C-208ENST00000529563 CD4P01730 458 aa14.26□□□□□ -0.13
USH1C-208ENST00000529563 SUPT20HL2P0C7V6 817 aa14.26□□□□□ -0.13
USH1C-208ENST00000529563 HSPD1P10809 573 aaKnown RBP14.26□□□□□ -0.13
USH1C-208ENST00000529563 IGFBP4P22692 258 aa14.26□□□□□ -0.13
USH1C-208ENST00000529563 PTGS1P23219 599 aa14.26□□□□□ -0.13
USH1C-208ENST00000529563 NKX3-2P78367 333 aa14.26□□□□□ -0.13
USH1C-208ENST00000529563 NMIQ13287 307 aaPredicted RBP14.26□□□□□ -0.13
USH1C-208ENST00000529563 DUSP28Q4G0W2 176 aa14.26□□□□□ -0.13
USH1C-208ENST00000529563 HERVK_113Q902F9 699 aa14.26□□□□□ -0.13
USH1C-208ENST00000529563 LNPKQ9C0E8 428 aa14.26□□□□□ -0.13
USH1C-208ENST00000529563 PRDM12Q9H4Q4 367 aa14.26□□□□□ -0.13
USH1C-208ENST00000529563 SLC28A3Q9HAS3 691 aa14.26□□□□□ -0.13
USH1C-208ENST00000529563 CCDC171Q6TFL3 1326 aa14.25□□□□□ -0.13
USH1C-208ENST00000529563 DHX16O60231 1041 aaKnown RBP14.25□□□□□ -0.13
USH1C-208ENST00000529563 B4GALT4O60513 344 aa14.25□□□□□ -0.13
USH1C-208ENST00000529563 IGHDP01880 384 aa14.25□□□□□ -0.13
USH1C-208ENST00000529563 PPP2R5BQ15173 497 aa14.25□□□□□ -0.13
USH1C-208ENST00000529563 USH1GQ495M9 461 aa14.25□□□□□ -0.13
USH1C-208ENST00000529563 AKNAD1Q5T1N1 836 aa14.25□□□□□ -0.13
USH1C-208ENST00000529563 BTNL9Q6UXG8 535 aa14.25□□□□□ -0.13
USH1C-208ENST00000529563 SLC30A10Q6XR72 485 aa14.25□□□□□ -0.13
USH1C-208ENST00000529563 CHD1LQ86WJ1 897 aa14.25□□□□□ -0.13
USH1C-208ENST00000529563 SLC43A3Q8NBI5 491 aa14.25□□□□□ -0.13
USH1C-208ENST00000529563 IL27Q8NEV9 243 aa14.25□□□□□ -0.13
USH1C-208ENST00000529563 ESR2Q92731 530 aa14.25□□□□□ -0.13
USH1C-208ENST00000529563 NOC4LQ9BVI4 516 aaKnown RBP14.25□□□□□ -0.13
USH1C-208ENST00000529563 TCP11L1Q9NUJ3 509 aa14.25□□□□□ -0.13
USH1C-208ENST00000529563 NOD1Q9Y239 953 aa14.25□□□□□ -0.13
USH1C-208ENST00000529563 SLC4A7Q9Y6M7 1214 aa14.25□□□□□ -0.13
USH1C-208ENST00000529563 UMODL1Q5DID0 1318 aa14.24□□□□□ -0.13
USH1C-208ENST00000529563 SALL3Q9BXA9 1300 aa14.24□□□□□ -0.13
USH1C-208ENST00000529563 LOC102724159A0A0B4J2E5 919 aa14.24□□□□□ -0.13
USH1C-208ENST00000529563 ZNF213O14771 459 aa14.24□□□□□ -0.13
USH1C-208ENST00000529563 PDHBP11177 359 aa14.24□□□□□ -0.13
USH1C-208ENST00000529563 PCP11498 1178 aaKnown RBP14.24□□□□□ -0.13
USH1C-208ENST00000529563 ZNF543Q08ER8 600 aa14.24□□□□□ -0.13
USH1C-208ENST00000529563 PWP2Q15269 919 aaKnown RBP14.24□□□□□ -0.13
USH1C-208ENST00000529563 ZNF589Q86UQ0 364 aaPredicted RBP14.24□□□□□ -0.13
USH1C-208ENST00000529563 SMC5Q8IY18 1101 aa14.24□□□□□ -0.13
USH1C-208ENST00000529563 SCLYQ96I15 445 aa14.24□□□□□ -0.13
USH1C-208ENST00000529563 TTC14Q96N46 770 aa14.24□□□□□ -0.13
USH1C-208ENST00000529563 MTG1Q9BT17 334 aaPredicted RBP14.24□□□□□ -0.13
USH1C-208ENST00000529563 ALDH8A1Q9H2A2 487 aaPredicted RBP14.24□□□□□ -0.13
USH1C-208ENST00000529563 NKX2-4Q9H2Z4 354 aa14.24□□□□□ -0.13
USH1C-208ENST00000529563 DIAPH3Q9NSV4 1193 aa14.24□□□□□ -0.13
USH1C-208ENST00000529563 TNKSO95271 1327 aa14.23□□□□□ -0.13
USH1C-208ENST00000529563 ZMYM6O95789 1325 aa14.23□□□□□ -0.13
USH1C-208ENST00000529563 NKRFO15226 690 aaKnown RBP eCLIP14.23□□□□□ -0.13
USH1C-208ENST00000529563 FGRP09769 529 aa14.23□□□□□ -0.13
USH1C-208ENST00000529563 RPS6P62753 249 aaKnown RBP14.23□□□□□ -0.13
USH1C-208ENST00000529563 CCDC85BQ15834 202 aaPredicted RBP14.23□□□□□ -0.13
USH1C-208ENST00000529563 CCDC178Q5BJE1 867 aa14.23□□□□□ -0.13
USH1C-208ENST00000529563 TJAP1Q5JTD0 557 aa14.23□□□□□ -0.13
USH1C-208ENST00000529563 TMEM63BQ5T3F8 832 aa14.23□□□□□ -0.13
USH1C-208ENST00000529563 GPATCH4Q5T3I0 446 aaKnown RBP14.23□□□□□ -0.13
USH1C-208ENST00000529563 RASIP1Q5U651 963 aa14.23□□□□□ -0.13
USH1C-208ENST00000529563 DEFB128Q7Z7B8 93 aa14.23□□□□□ -0.13
USH1C-208ENST00000529563 IQCA1Q86XH1 822 aa14.23□□□□□ -0.13
USH1C-208ENST00000529563 TICAM2Q86XR7 235 aa14.23□□□□□ -0.13
USH1C-208ENST00000529563 MICALL1Q8N3F8 863 aa14.23□□□□□ -0.13
USH1C-208ENST00000529563 RETREG2Q8NC44 543 aa14.23□□□□□ -0.13
USH1C-208ENST00000529563 MORC4Q8TE76 937 aa14.23□□□□□ -0.13
USH1C-208ENST00000529563 SCFD2Q8WU76 684 aa14.23□□□□□ -0.13
USH1C-208ENST00000529563 ZKSCAN3Q9BRR0 538 aa14.23□□□□□ -0.13
USH1C-208ENST00000529563 KAT14Q9H8E8 782 aa14.23□□□□□ -0.13
USH1C-208ENST00000529563 TRMT13Q9NUP7 481 aaKnown RBP14.23□□□□□ -0.13
USH1C-208ENST00000529563 CXXC1Q9P0U4 656 aaPredicted RBP14.23□□□□□ -0.13
USH1C-208ENST00000529563 LRRC37A2A6NM11 1700 aa14.23□□□□□ -0.13
USH1C-208ENST00000529563 GRIN2DO15399 1336 aa14.22□□□□□ -0.13
USH1C-208ENST00000529563 KPNA6O60684 536 aa14.22□□□□□ -0.13
USH1C-208ENST00000529563 GOLGA8HP0CJ92 632 aa14.22□□□□□ -0.13
USH1C-208ENST00000529563 TXNP10599 105 aaKnown RBP14.22□□□□□ -0.13
USH1C-208ENST00000529563 CYP2C9P11712 490 aa14.22□□□□□ -0.13
USH1C-208ENST00000529563 ACTN1P12814 892 aa14.22□□□□□ -0.13
USH1C-208ENST00000529563 NOVP48745 357 aa14.22□□□□□ -0.13
USH1C-208ENST00000529563 PURAQ00577 322 aaKnown RBP14.22□□□□□ -0.13
USH1C-208ENST00000529563 NUCB1Q02818 461 aa14.22□□□□□ -0.13
USH1C-208ENST00000529563 TTLL4Q14679 1199 aa14.22□□□□□ -0.13
USH1C-208ENST00000529563 ERICH6BQ5W0A0 696 aa14.22□□□□□ -0.13
USH1C-208ENST00000529563 PPP2R2DQ66LE6 453 aa14.22□□□□□ -0.13
USH1C-208ENST00000529563 USP38Q8NB14 1042 aa14.22□□□□□ -0.13
USH1C-208ENST00000529563 DNERQ8NFT8 737 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms