RNA–Protein interactions for RNA: ENST00000528768.5

USF1-208, Transcript of upstream transcription factor 1, humanhuman

TSL 3

Gene USF1, Length 505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-208ENST00000528768 INPP5BP32019 993 aa13.36□□□□□ -0.27
USF1-208ENST00000528768 MAGEA10P43363 369 aaPredicted RBP13.36□□□□□ -0.27
USF1-208ENST00000528768 GSDMDP57764 484 aa13.36□□□□□ -0.27
USF1-208ENST00000528768 GRM4Q14833 912 aa13.36□□□□□ -0.27
USF1-208ENST00000528768 PKN1Q16512 942 aa13.36□□□□□ -0.27
USF1-208ENST00000528768 PFKFB3Q16875 520 aaPredicted RBP13.36□□□□□ -0.27
USF1-208ENST00000528768 CMTR1Q8N1G2 835 aaKnown RBP13.36□□□□□ -0.27
USF1-208ENST00000528768 AOPEPQ8N6M6 819 aa13.36□□□□□ -0.27
USF1-208ENST00000528768 PNMA1Q8ND90 353 aa13.36□□□□□ -0.27
USF1-208ENST00000528768 CCDC12Q8WUD4 166 aaPredicted RBP13.36□□□□□ -0.27
USF1-208ENST00000528768 FAM151AQ8WW52 585 aa13.36□□□□□ -0.27
USF1-208ENST00000528768 FBXO2Q9UK22 296 aaPredicted RBP13.36□□□□□ -0.27
USF1-208ENST00000528768 ZMYND8Q9ULU4 1186 aaPredicted RBP13.36□□□□□ -0.27
USF1-208ENST00000528768 CNTNAP5Q8WYK1 1306 aa13.36□□□□□ -0.27
USF1-208ENST00000528768 BAZ2AQ9UIF9 1905 aaKnown RBP13.35□□□□□ -0.27
USF1-208ENST00000528768 AP5Z1O43299 807 aa13.35□□□□□ -0.27
USF1-208ENST00000528768 CYP2C8P10632 490 aa13.35□□□□□ -0.27
USF1-208ENST00000528768 CACNB3P54284 484 aa13.35□□□□□ -0.27
USF1-208ENST00000528768 NOLC1Q14978 699 aaKnown RBP eCLIP13.35□□□□□ -0.27
USF1-208ENST00000528768 CT47A1Q5JQC4 288 aaPredicted RBP13.35□□□□□ -0.27
USF1-208ENST00000528768 GPAT2Q6NUI2 795 aa13.35□□□□□ -0.27
USF1-208ENST00000528768 MIGA2Q7L4E1 593 aa13.35□□□□□ -0.27
USF1-208ENST00000528768 MAPKAPK5Q8IW41 473 aa13.35□□□□□ -0.27
USF1-208ENST00000528768 DHX40Q8IX18 779 aaKnown RBP13.35□□□□□ -0.27
USF1-208ENST00000528768 TRIML1Q8N9V2 468 aa13.35□□□□□ -0.27
USF1-208ENST00000528768 TTC12Q9H892 705 aaPredicted RBP13.35□□□□□ -0.27
USF1-208ENST00000528768 IMPACTQ9P2X3 320 aa13.35□□□□□ -0.27
USF1-208ENST00000528768 GAKO14976 1311 aa13.35□□□□□ -0.27
USF1-208ENST00000528768 A0A0G2JLL6 359 aaPredicted RBP13.34□□□□□ -0.27
USF1-208ENST00000528768 HMGCRP04035 888 aa13.34□□□□□ -0.27
USF1-208ENST00000528768 ATP2B1P20020 1258 aa13.34□□□□□ -0.27
USF1-208ENST00000528768 SMARCA1P28370 1054 aa13.34□□□□□ -0.27
USF1-208ENST00000528768 TOB1P50616 345 aaPredicted RBP13.34□□□□□ -0.27
USF1-208ENST00000528768 NR5A1Q13285 461 aa13.34□□□□□ -0.27
USF1-208ENST00000528768 DIXDC1Q155Q3 683 aa13.34□□□□□ -0.27
USF1-208ENST00000528768 TTC38Q5R3I4 469 aa13.34□□□□□ -0.27
USF1-208ENST00000528768 APOBEC3HQ6NTF7 200 aaKnown RBP13.34□□□□□ -0.27
USF1-208ENST00000528768 C16orf86Q6ZW13 317 aa13.34□□□□□ -0.27
USF1-208ENST00000528768 CCDC186Q7Z3E2 898 aa13.34□□□□□ -0.27
USF1-208ENST00000528768 PRRT2Q7Z6L0 340 aaPredicted RBP13.34□□□□□ -0.27
USF1-208ENST00000528768 SRBD1Q8N5C6 995 aaKnown RBP13.34□□□□□ -0.27
USF1-208ENST00000528768 SMCR8Q8TEV9 937 aaPredicted RBP13.34□□□□□ -0.27
USF1-208ENST00000528768 SMARCE1Q969G3 411 aa13.34□□□□□ -0.27
USF1-208ENST00000528768 C11orf49Q9H6J7 331 aa13.34□□□□□ -0.27
USF1-208ENST00000528768 HMX1Q9NP08 348 aaPredicted RBP13.34□□□□□ -0.27
USF1-208ENST00000528768 ALPK3Q96L96 1907 aa13.34□□□□□ -0.27
USF1-208ENST00000528768 MYH2Q9UKX2 1941 aa13.34□□□□□ -0.27
USF1-208ENST00000528768 POTEB2H3BUK9 544 aa13.33□□□□□ -0.28
USF1-208ENST00000528768 TOP1P11387 765 aaKnown RBP13.33□□□□□ -0.28
USF1-208ENST00000528768 TXLNAP40222 546 aa13.33□□□□□ -0.28
USF1-208ENST00000528768 MLKLQ8NB16 471 aa13.33□□□□□ -0.28
USF1-208ENST00000528768 NEDD1Q8NHV4 660 aa13.33□□□□□ -0.28
USF1-208ENST00000528768 OXER1Q8TDS5 423 aa13.33□□□□□ -0.28
USF1-208ENST00000528768 DIS3LQ8TF46 1054 aaKnown RBP13.33□□□□□ -0.28
USF1-208ENST00000528768 SYMPKQ92797 1274 aaKnown RBP13.33□□□□□ -0.28
USF1-208ENST00000528768 CLIC6Q96NY7 704 aa13.33□□□□□ -0.28
USF1-208ENST00000528768 PICK1Q9NRD5 415 aa13.33□□□□□ -0.28
USF1-208ENST00000528768 SPTLC3Q9NUV7 552 aa13.33□□□□□ -0.28
USF1-208ENST00000528768 PCDHB6Q9Y5E3 794 aa13.33□□□□□ -0.28
USF1-208ENST00000528768 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.32□□□□□ -0.28
USF1-208ENST00000528768 BIN1O00499 593 aa13.32□□□□□ -0.28
USF1-208ENST00000528768 CDK8P49336 464 aa13.32□□□□□ -0.28
USF1-208ENST00000528768 MYL5Q02045 173 aa13.32□□□□□ -0.28
USF1-208ENST00000528768 POSTNQ15063 836 aa13.32□□□□□ -0.28
USF1-208ENST00000528768 FAM110CQ1W6H9 321 aa13.32□□□□□ -0.28
USF1-208ENST00000528768 DPCR1Q3MIW9 517 aa13.32□□□□□ -0.28
USF1-208ENST00000528768 RCSD1Q6JBY9 416 aa13.32□□□□□ -0.28
USF1-208ENST00000528768 BLIDQ8IZY5 108 aa13.32□□□□□ -0.28
USF1-208ENST00000528768 KIAA1524Q8TCG1 905 aa13.32□□□□□ -0.28
USF1-208ENST00000528768 DYNLL2Q96FJ2 89 aa13.32□□□□□ -0.28
USF1-208ENST00000528768 PRIMPOLQ96LW4 560 aa13.32□□□□□ -0.28
USF1-208ENST00000528768 ZNF830Q96NB3 372 aaPredicted RBP13.32□□□□□ -0.28
USF1-208ENST00000528768 SWAP70Q9UH65 585 aa13.32□□□□□ -0.28
USF1-208ENST00000528768 SAP30BPQ9UHR5 308 aaKnown RBP13.32□□□□□ -0.28
USF1-208ENST00000528768 PNMA3Q9UL41 463 aa13.32□□□□□ -0.28
USF1-208ENST00000528768 PCDHA4Q9UN74 947 aa13.32□□□□□ -0.28
USF1-208ENST00000528768 STX8Q9UNK0 236 aa13.32□□□□□ -0.28
USF1-208ENST00000528768 MYH6P13533 1939 aa13.32□□□□□ -0.28
USF1-208ENST00000528768 NAV1Q8NEY1 1877 aa13.31□□□□□ -0.28
USF1-208ENST00000528768 CCDC194A0A1B0GVG4 234 aa13.31□□□□□ -0.28
USF1-208ENST00000528768 hCG_1984214I3L0E3 225 aa13.31□□□□□ -0.28
USF1-208ENST00000528768 POLR2DO15514 142 aaKnown RBP13.31□□□□□ -0.28
USF1-208ENST00000528768 NMT2O60551 498 aa13.31□□□□□ -0.28
USF1-208ENST00000528768 HLA-DOAP06340 250 aa13.31□□□□□ -0.28
USF1-208ENST00000528768 PARP1P09874 1014 aaKnown RBP13.31□□□□□ -0.28
USF1-208ENST00000528768 SYN1P17600 705 aa13.31□□□□□ -0.28
USF1-208ENST00000528768 RASA1P20936 1047 aa13.31□□□□□ -0.28
USF1-208ENST00000528768 PTGS1P23219 599 aa13.31□□□□□ -0.28
USF1-208ENST00000528768 LONRF3Q496Y0 759 aa13.31□□□□□ -0.28
USF1-208ENST00000528768 ARL6IP4Q66PJ3 421 aaKnown RBP13.31□□□□□ -0.28
USF1-208ENST00000528768 SCYL3Q8IZE3 742 aa13.31□□□□□ -0.28
USF1-208ENST00000528768 ZNF713Q8N859 430 aaPredicted RBP13.31□□□□□ -0.28
USF1-208ENST00000528768 DAGLBQ8NCG7 672 aa13.31□□□□□ -0.28
USF1-208ENST00000528768 CCDC150Q8NCX0 1101 aa13.31□□□□□ -0.28
USF1-208ENST00000528768 CSRNP2Q9H175 543 aa13.31□□□□□ -0.28
USF1-208ENST00000528768 SEC63Q9UGP8 760 aaKnown RBP13.31□□□□□ -0.28
USF1-208ENST00000528768 OGDHLQ9ULD0 1010 aa13.31□□□□□ -0.28
USF1-208ENST00000528768 R3HCC1Q9Y3T6 440 aaKnown RBP13.31□□□□□ -0.28
USF1-208ENST00000528768 ZHX2Q9Y6X8 837 aa13.31□□□□□ -0.28
USF1-208ENST00000528768 FLT1P17948 1338 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms