RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 SH2B1Q9NRF2 756 aaPredicted RBP8.64□□□□□ -1.03
CD44-228ENST00000528455 PAPPA2Q9BXP8 1791 aa8.63□□□□□ -1.03
CD44-228ENST00000528455 PLIN4Q96Q06 1357 aa8.63□□□□□ -1.03
CD44-228ENST00000528455 TNKSO95271 1327 aa8.63□□□□□ -1.03
CD44-228ENST00000528455 FAM196BA6NMK8 535 aa8.63□□□□□ -1.03
CD44-228ENST00000528455 K7ELQ4 463 aaPredicted RBP8.63□□□□□ -1.03
CD44-228ENST00000528455 MPHOSPH10O00566 681 aaKnown RBP8.63□□□□□ -1.03
CD44-228ENST00000528455 DHX16O60231 1041 aaKnown RBP8.63□□□□□ -1.03
CD44-228ENST00000528455 TTLL1O95922 423 aa8.63□□□□□ -1.03
CD44-228ENST00000528455 RFX1P22670 979 aa8.63□□□□□ -1.03
CD44-228ENST00000528455 GUCY1A2P33402 732 aa8.63□□□□□ -1.03
CD44-228ENST00000528455 IREB2P48200 963 aaKnown RBP8.63□□□□□ -1.03
CD44-228ENST00000528455 PRKG1Q13976 671 aa8.63□□□□□ -1.03
CD44-228ENST00000528455 CTC1Q2NKJ3 1217 aa8.63□□□□□ -1.03
CD44-228ENST00000528455 CATIPQ7Z7H3 387 aa8.63□□□□□ -1.03
CD44-228ENST00000528455 RASAL3Q86YV0 1011 aa8.63□□□□□ -1.03
CD44-228ENST00000528455 KDF1Q8NAX2 398 aaPredicted RBP8.63□□□□□ -1.03
CD44-228ENST00000528455 CEP95Q96GE4 821 aa8.63□□□□□ -1.03
CD44-228ENST00000528455 TMX3Q96JJ7 454 aa8.63□□□□□ -1.03
CD44-228ENST00000528455 TCEANC2Q96MN5 208 aa8.63□□□□□ -1.03
CD44-228ENST00000528455 ARID3AQ99856 593 aa8.63□□□□□ -1.03
CD44-228ENST00000528455 TMEM47Q9BQJ4 181 aa8.63□□□□□ -1.03
CD44-228ENST00000528455 LRRC2Q9BYS8 371 aa8.63□□□□□ -1.03
CD44-228ENST00000528455 SAGE1Q9NXZ1 904 aa8.63□□□□□ -1.03
CD44-228ENST00000528455 CLIP2Q9UDT6 1046 aa8.63□□□□□ -1.03
CD44-228ENST00000528455 BRPF3Q9ULD4 1205 aa8.63□□□□□ -1.03
CD44-228ENST00000528455 SLC12A7Q9Y666 1083 aa8.63□□□□□ -1.03
CD44-228ENST00000528455 CCDC196A0A1B0GTZ2 297 aa8.62□□□□□ -1.03
CD44-228ENST00000528455 NMT2O60551 498 aa8.62□□□□□ -1.03
CD44-228ENST00000528455 PFKFB2O60825 505 aa8.62□□□□□ -1.03
CD44-228ENST00000528455 MYCP01106 439 aaPredicted RBP8.62□□□□□ -1.03
CD44-228ENST00000528455 GH2P01242 217 aa8.62□□□□□ -1.03
CD44-228ENST00000528455 SLURP2P0DP57 97 aa8.62□□□□□ -1.03
CD44-228ENST00000528455 EEF2P13639 858 aaKnown RBP8.62□□□□□ -1.03
CD44-228ENST00000528455 SMARCA1P28370 1054 aa8.62□□□□□ -1.03
CD44-228ENST00000528455 JAG1P78504 1218 aa8.62□□□□□ -1.03
CD44-228ENST00000528455 APOBRQ0VD83 1088 aa8.62□□□□□ -1.03
CD44-228ENST00000528455 TROAPQ12815 778 aa8.62□□□□□ -1.03
CD44-228ENST00000528455 CUL4AQ13619 759 aa8.62□□□□□ -1.03
CD44-228ENST00000528455 SEPT2Q15019 361 aa8.62□□□□□ -1.03
CD44-228ENST00000528455 ME3Q16798 604 aa8.62□□□□□ -1.03
CD44-228ENST00000528455 NOL9Q5SY16 702 aaKnown RBP8.62□□□□□ -1.03
CD44-228ENST00000528455 LDLRAD1Q5T700 205 aa8.62□□□□□ -1.03
CD44-228ENST00000528455 APOA5Q6Q788 366 aa8.62□□□□□ -1.03
CD44-228ENST00000528455 NFXL1Q6ZNB6 911 aa8.62□□□□□ -1.03
CD44-228ENST00000528455 HSCBQ8IWL3 235 aa8.62□□□□□ -1.03
CD44-228ENST00000528455 ANKRD13AQ8IZ07 590 aa8.62□□□□□ -1.03
CD44-228ENST00000528455 MEIOBQ8N635 442 aa8.62□□□□□ -1.03
CD44-228ENST00000528455 FANCBQ8NB91 859 aa8.62□□□□□ -1.03
CD44-228ENST00000528455 DDX55Q8NHQ9 600 aaKnown RBP eCLIP8.62□□□□□ -1.03
CD44-228ENST00000528455 INTS4Q96HW7 963 aaKnown RBP8.62□□□□□ -1.03
CD44-228ENST00000528455 WDR18Q9BV38 432 aa8.62□□□□□ -1.03
CD44-228ENST00000528455 SLKQ9H2G2 1235 aaPredicted RBP8.62□□□□□ -1.03
CD44-228ENST00000528455 KAT14Q9H8E8 782 aa8.62□□□□□ -1.03
CD44-228ENST00000528455 RNF186Q9NXI6 227 aa8.62□□□□□ -1.03
CD44-228ENST00000528455 ZBTB21Q9ULJ3 1066 aa8.62□□□□□ -1.03
CD44-228ENST00000528455 TPCN1Q9ULQ1 816 aa8.62□□□□□ -1.03
CD44-228ENST00000528455 STX8Q9UNK0 236 aa8.62□□□□□ -1.03
CD44-228ENST00000528455 NOD1Q9Y239 953 aa8.62□□□□□ -1.03
CD44-228ENST00000528455 TMX2Q9Y320 296 aa8.62□□□□□ -1.03
CD44-228ENST00000528455 GREB1LQ9C091 1923 aaPredicted RBP8.61□□□□□ -1.03
CD44-228ENST00000528455 KLF18A0A0U1RQI7 1052 aa8.61□□□□□ -1.03
CD44-228ENST00000528455 C19orf81C9J6K1 198 aa8.61□□□□□ -1.03
CD44-228ENST00000528455 F5H6K3 240 aa8.61□□□□□ -1.03
CD44-228ENST00000528455 AXIN1O15169 862 aa8.61□□□□□ -1.03
CD44-228ENST00000528455 ZBTB43O43298 467 aa8.61□□□□□ -1.03
CD44-228ENST00000528455 TRPA1O75762 1119 aa8.61□□□□□ -1.03
CD44-228ENST00000528455 GDF11O95390 407 aa8.61□□□□□ -1.03
CD44-228ENST00000528455 ADH1AP07327 375 aa8.61□□□□□ -1.03
CD44-228ENST00000528455 INPP5BP32019 993 aa8.61□□□□□ -1.03
CD44-228ENST00000528455 KIF5BP33176 963 aa8.61□□□□□ -1.03
CD44-228ENST00000528455 KLRC3Q07444 240 aa8.61□□□□□ -1.03
CD44-228ENST00000528455 RAB3GAP1Q15042 981 aa8.61□□□□□ -1.03
CD44-228ENST00000528455 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.61□□□□□ -1.03
CD44-228ENST00000528455 SCYL3Q8IZE3 742 aa8.61□□□□□ -1.03
CD44-228ENST00000528455 ZKSCAN4Q969J2 545 aaPredicted RBP8.61□□□□□ -1.03
CD44-228ENST00000528455 IPO9Q96P70 1041 aaKnown RBP8.61□□□□□ -1.03
CD44-228ENST00000528455 WRNIP1Q96S55 665 aa8.61□□□□□ -1.03
CD44-228ENST00000528455 LLPHQ9BRT6 129 aaKnown RBP8.61□□□□□ -1.03
CD44-228ENST00000528455 SH2D4AQ9H788 454 aa8.61□□□□□ -1.03
CD44-228ENST00000528455 AS3MTQ9HBK9 375 aa8.61□□□□□ -1.03
CD44-228ENST00000528455 ARHGEF10LQ9HCE6 1279 aa8.61□□□□□ -1.03
CD44-228ENST00000528455 PICK1Q9NRD5 415 aa8.61□□□□□ -1.03
CD44-228ENST00000528455 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.61□□□□□ -1.03
CD44-228ENST00000528455 PCDHGA11Q9Y5H2 935 aa8.61□□□□□ -1.03
CD44-228ENST00000528455 MYH4Q9Y623 1939 aa8.6□□□□□ -1.03
CD44-228ENST00000528455 USP17L10C9JJH3 530 aa8.6□□□□□ -1.03
CD44-228ENST00000528455 ST8SIA5O15466 376 aa8.6□□□□□ -1.03
CD44-228ENST00000528455 DDAH1O94760 285 aa8.6□□□□□ -1.03
CD44-228ENST00000528455 SNHG28P0DPA3 235 aa8.6□□□□□ -1.03
CD44-228ENST00000528455 PDIA4P13667 645 aaKnown RBP8.6□□□□□ -1.03
CD44-228ENST00000528455 PTPRAP18433 802 aa8.6□□□□□ -1.03
CD44-228ENST00000528455 TM4SF4P48230 202 aa8.6□□□□□ -1.03
CD44-228ENST00000528455 GNAQP50148 359 aa8.6□□□□□ -1.03
CD44-228ENST00000528455 PPATQ06203 517 aa8.6□□□□□ -1.03
CD44-228ENST00000528455 SREBF2Q12772 1141 aa8.6□□□□□ -1.03
CD44-228ENST00000528455 CPLX2Q6PUV4 134 aaKnown RBP8.6□□□□□ -1.03
CD44-228ENST00000528455 ZNF654Q8IZM8 581 aa8.6□□□□□ -1.03
CD44-228ENST00000528455 ZNF280CQ8ND82 737 aa8.6□□□□□ -1.03
CD44-228ENST00000528455 GMCL1P1Q8NEA9 526 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms