RNA–Protein interactions for RNA: ENST00000528280.1

CHD7-208, Transcript of chromodomain helicase DNA binding protein 7, human

TSL 2

Gene CHD7, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD7-208	ENST00000528280	CLEC4D	Q8WXI8	215 aa		11.19	□□□□□ -0.62
CHD7-208	ENST00000528280	FERMT2	Q96AC1	680 aa		11.19	□□□□□ -0.62
CHD7-208	ENST00000528280	FGD4	Q96M96	766 aa		11.19	□□□□□ -0.62
CHD7-208	ENST00000528280	TOX2	Q96NM4	488 aa		11.19	□□□□□ -0.62
CHD7-208	ENST00000528280	MAP3K14	Q99558	947 aa		11.19	□□□□□ -0.62
CHD7-208	ENST00000528280	UPF3A	Q9H1J1	476 aa	Known RBP	11.19	□□□□□ -0.62
CHD7-208	ENST00000528280	ATP11B	Q9Y2G3	1177 aa		11.19	□□□□□ -0.62
CHD7-208	ENST00000528280	MROH7	Q68CQ1	1323 aa		11.18	□□□□□ -0.62
CHD7-208	ENST00000528280	SYNRG	Q9UMZ2	1314 aa		11.18	□□□□□ -0.62
CHD7-208	ENST00000528280	DCDC2C	A8MYV0	355 aa		11.18	□□□□□ -0.62
CHD7-208	ENST00000528280	SYN1	P17600	705 aa		11.18	□□□□□ -0.62
CHD7-208	ENST00000528280	CALML3	P27482	149 aa		11.18	□□□□□ -0.62
CHD7-208	ENST00000528280	RPS6	P62753	249 aa	Known RBP	11.18	□□□□□ -0.62
CHD7-208	ENST00000528280	PDE4D	Q08499	809 aa		11.18	□□□□□ -0.62
CHD7-208	ENST00000528280	BRDT	Q58F21	947 aa	Predicted RBP	11.18	□□□□□ -0.62
CHD7-208	ENST00000528280	VTI1A	Q96AJ9	217 aa		11.18	□□□□□ -0.62
CHD7-208	ENST00000528280	FAM122A	Q96E09	287 aa		11.18	□□□□□ -0.62
CHD7-208	ENST00000528280	CCDC136	Q96JN2	1154 aa		11.18	□□□□□ -0.62
CHD7-208	ENST00000528280	IWS1	Q96ST2	819 aa		11.18	□□□□□ -0.62
CHD7-208	ENST00000528280	ESYT1	Q9BSJ8	1104 aa		11.18	□□□□□ -0.62
CHD7-208	ENST00000528280	AMN	Q9BXJ7	453 aa		11.18	□□□□□ -0.62
CHD7-208	ENST00000528280	KATNBL1	Q9H079	304 aa		11.18	□□□□□ -0.62
CHD7-208	ENST00000528280	IL25	Q9H293	177 aa		11.18	□□□□□ -0.62
CHD7-208	ENST00000528280	VAT1L	Q9HCJ6	419 aa		11.18	□□□□□ -0.62
CHD7-208	ENST00000528280	STARD7	Q9NQZ5	370 aa		11.18	□□□□□ -0.62
CHD7-208	ENST00000528280	RBM8A	Q9Y5S9	174 aa	Known RBP	11.18	□□□□□ -0.62
CHD7-208	ENST00000528280		A0A1W2PQ45	241 aa	Predicted RBP	11.17	□□□□□ -0.62
CHD7-208	ENST00000528280		A0A1W2PQY0	241 aa		11.17	□□□□□ -0.62
CHD7-208	ENST00000528280	PALM3	A6NDB9	673 aa	Predicted RBP	11.17	□□□□□ -0.62
CHD7-208	ENST00000528280	NFIB	O00712	420 aa		11.17	□□□□□ -0.62
CHD7-208	ENST00000528280	NKRF	O15226	690 aa	Known RBP eCLIP	11.17	□□□□□ -0.62
CHD7-208	ENST00000528280	NEFL	P07196	543 aa		11.17	□□□□□ -0.62
CHD7-208	ENST00000528280	SMARCA1	P28370	1054 aa		11.17	□□□□□ -0.62
CHD7-208	ENST00000528280	HOXD11	P31277	338 aa	Predicted RBP	11.17	□□□□□ -0.62
CHD7-208	ENST00000528280	KIF5B	P33176	963 aa		11.17	□□□□□ -0.62
CHD7-208	ENST00000528280	MCM5	P33992	734 aa		11.17	□□□□□ -0.62
CHD7-208	ENST00000528280	ALDH5A1	P51649	535 aa	Predicted RBP	11.17	□□□□□ -0.62
CHD7-208	ENST00000528280	CDC37	Q16543	378 aa	Predicted RBP	11.17	□□□□□ -0.62
CHD7-208	ENST00000528280	USH1G	Q495M9	461 aa		11.17	□□□□□ -0.62
CHD7-208	ENST00000528280	TMEM67	Q5HYA8	995 aa		11.17	□□□□□ -0.62
CHD7-208	ENST00000528280	CCSAP	Q6IQ19	270 aa	Predicted RBP	11.17	□□□□□ -0.62
CHD7-208	ENST00000528280	CYB5R4	Q7L1T6	521 aa		11.17	□□□□□ -0.62
CHD7-208	ENST00000528280	RASGRP2	Q7LDG7	609 aa		11.17	□□□□□ -0.62
CHD7-208	ENST00000528280	ANKRD33	Q7Z3H0	272 aa		11.17	□□□□□ -0.62
CHD7-208	ENST00000528280	NSUN6	Q8TEA1	469 aa	Known RBP	11.17	□□□□□ -0.62
CHD7-208	ENST00000528280	TMEM87B	Q96K49	555 aa		11.17	□□□□□ -0.62
CHD7-208	ENST00000528280	FAM161B	Q96MY7	647 aa		11.17	□□□□□ -0.62
CHD7-208	ENST00000528280	LZTS2	Q9BRK4	669 aa		11.17	□□□□□ -0.62
CHD7-208	ENST00000528280	JMJD4	Q9H9V9	463 aa		11.17	□□□□□ -0.62
CHD7-208	ENST00000528280	LAMA4	Q16363	1823 aa		11.16	□□□□□ -0.62
CHD7-208	ENST00000528280	RBM47	A0AV96	593 aa	Known RBP	11.16	□□□□□ -0.62
CHD7-208	ENST00000528280	TNFRSF10A	O00220	468 aa		11.16	□□□□□ -0.62
CHD7-208	ENST00000528280	ZBTB5	O15062	677 aa		11.16	□□□□□ -0.62
CHD7-208	ENST00000528280	TLR3	O15455	904 aa	Known RBP	11.16	□□□□□ -0.62
CHD7-208	ENST00000528280	DYNC1LI2	O43237	492 aa	Predicted RBP	11.16	□□□□□ -0.62
CHD7-208	ENST00000528280	KPNA6	O60684	536 aa		11.16	□□□□□ -0.62
CHD7-208	ENST00000528280	ASGR1	P07306	291 aa		11.16	□□□□□ -0.62
CHD7-208	ENST00000528280	CALM1	P0DP23	149 aa		11.16	□□□□□ -0.62
CHD7-208	ENST00000528280	CALM2	P0DP24	149 aa		11.16	□□□□□ -0.62
CHD7-208	ENST00000528280	CALM3	P0DP25	149 aa		11.16	□□□□□ -0.62
CHD7-208	ENST00000528280	GNAQ	P50148	359 aa		11.16	□□□□□ -0.62
CHD7-208	ENST00000528280	TLE2	Q04725	743 aa		11.16	□□□□□ -0.62
CHD7-208	ENST00000528280	QRICH1	Q2TAL8	776 aa		11.16	□□□□□ -0.62
CHD7-208	ENST00000528280	TRIM60	Q495X7	471 aa		11.16	□□□□□ -0.62
CHD7-208	ENST00000528280	DUSP28	Q4G0W2	176 aa		11.16	□□□□□ -0.62
CHD7-208	ENST00000528280	TAPT1	Q6NXT6	567 aa		11.16	□□□□□ -0.62
CHD7-208	ENST00000528280	MAFA	Q8NHW3	353 aa	Predicted RBP	11.16	□□□□□ -0.62
CHD7-208	ENST00000528280	IGDCC4	Q8TDY8	1250 aa		11.16	□□□□□ -0.62
CHD7-208	ENST00000528280	WDR11	Q9BZH6	1224 aa		11.16	□□□□□ -0.62
CHD7-208	ENST00000528280	MAD2L2	Q9UI95	211 aa		11.16	□□□□□ -0.62
CHD7-208	ENST00000528280	GNE	Q9Y223	722 aa	Known RBP	11.16	□□□□□ -0.62
CHD7-208	ENST00000528280	DNAH12	Q6ZR08	3092 aa		11.15	□□□□□ -0.62
CHD7-208	ENST00000528280	NCOR1	O75376	2440 aa		11.15	□□□□□ -0.62
CHD7-208	ENST00000528280	FRMPD3	Q5JV73	1810 aa		11.15	□□□□□ -0.62
CHD7-208	ENST00000528280		A0A0U1RQG5	324 aa	Predicted RBP	11.15	□□□□□ -0.62
CHD7-208	ENST00000528280	ARVCF	O00192	962 aa		11.15	□□□□□ -0.62
CHD7-208	ENST00000528280	CLTB	P09497	229 aa		11.15	□□□□□ -0.62
CHD7-208	ENST00000528280	LIFR	P42702	1097 aa		11.15	□□□□□ -0.62
CHD7-208	ENST00000528280	CPT1A	P50416	773 aa		11.15	□□□□□ -0.62
CHD7-208	ENST00000528280	TROAP	Q12815	778 aa		11.15	□□□□□ -0.62
CHD7-208	ENST00000528280	GRM4	Q14833	912 aa		11.15	□□□□□ -0.62
CHD7-208	ENST00000528280	NECTIN1	Q15223	517 aa		11.15	□□□□□ -0.62
CHD7-208	ENST00000528280	STXBP2	Q15833	593 aa		11.15	□□□□□ -0.62
CHD7-208	ENST00000528280	FSCN1	Q16658	493 aa	Known RBP	11.15	□□□□□ -0.62
CHD7-208	ENST00000528280	SYNE3	Q6ZMZ3	975 aa		11.15	□□□□□ -0.62
CHD7-208	ENST00000528280	EEPD1	Q7L9B9	569 aa		11.15	□□□□□ -0.62
CHD7-208	ENST00000528280	TLK2	Q86UE8	772 aa		11.15	□□□□□ -0.62
CHD7-208	ENST00000528280	CTCFL	Q8NI51	663 aa	Predicted RBP	11.15	□□□□□ -0.62
CHD7-208	ENST00000528280	SCFD2	Q8WU76	684 aa		11.15	□□□□□ -0.62
CHD7-208	ENST00000528280	MTMR8	Q96EF0	704 aa		11.15	□□□□□ -0.62
CHD7-208	ENST00000528280	CDX2	Q99626	313 aa	Predicted RBP	11.15	□□□□□ -0.62
CHD7-208	ENST00000528280	LSG1	Q9H089	658 aa	Known RBP	11.15	□□□□□ -0.62
CHD7-208	ENST00000528280	RIOX1	Q9H6W3	641 aa		11.15	□□□□□ -0.62
CHD7-208	ENST00000528280	ANO2	Q9NQ90	1003 aa		11.15	□□□□□ -0.62
CHD7-208	ENST00000528280	GPHN	Q9NQX3	736 aa	Predicted RBP	11.15	□□□□□ -0.62
CHD7-208	ENST00000528280	TMEM39A	Q9NV64	488 aa		11.15	□□□□□ -0.62
CHD7-208	ENST00000528280	POLR3E	Q9NVU0	708 aa		11.15	□□□□□ -0.62
CHD7-208	ENST00000528280	PCDHA1	Q9Y5I3	950 aa		11.15	□□□□□ -0.62
CHD7-208	ENST00000528280	PNMA6F	A0A0J9YX94	578 aa		11.14	□□□□□ -0.63
CHD7-208	ENST00000528280	CCDC69	A6NI79	296 aa		11.14	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms