RNA–Protein interactions for RNA: ENST00000527887.1

CAPN1-212, Transcript of calpain 1, humanhuman

TSL 3

Gene CAPN1, Length 348 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-212ENST00000527887 ENAHQ8N8S7 591 aaPredicted RBP16.6■□□□□ 0.25
CAPN1-212ENST00000527887 MTMR10Q9NXD2 777 aa16.6■□□□□ 0.25
CAPN1-212ENST00000527887 U3KPZ7 1027 aaPredicted RBP16.6■□□□□ 0.25
CAPN1-212ENST00000527887 TNKSO95271 1327 aa16.6■□□□□ 0.25
CAPN1-212ENST00000527887 RPS6P62753 249 aaKnown RBP16.59■□□□□ 0.25
CAPN1-212ENST00000527887 SMAD3P84022 425 aaKnown RBP16.59■□□□□ 0.25
CAPN1-212ENST00000527887 FPGSQ05932 587 aa16.59■□□□□ 0.25
CAPN1-212ENST00000527887 MCF2L2Q86YR7 1114 aa16.59■□□□□ 0.25
CAPN1-212ENST00000527887 FBXO16Q8IX29 292 aaPredicted RBP16.59■□□□□ 0.25
CAPN1-212ENST00000527887 SLC43A3Q8NBI5 491 aa16.59■□□□□ 0.25
CAPN1-212ENST00000527887 TBX21Q9UL17 535 aa16.59■□□□□ 0.25
CAPN1-212ENST00000527887 STXBP5LQ9Y2K9 1186 aa16.59■□□□□ 0.25
CAPN1-212ENST00000527887 ABCB11O95342 1321 aa16.59■□□□□ 0.25
CAPN1-212ENST00000527887 NKRFO15226 690 aaKnown RBP eCLIP16.58■□□□□ 0.24
CAPN1-212ENST00000527887 PARP1P09874 1014 aaKnown RBP16.58■□□□□ 0.24
CAPN1-212ENST00000527887 GOLGA8HP0CJ92 632 aa16.58■□□□□ 0.24
CAPN1-212ENST00000527887 EDNRBP24530 442 aa16.58■□□□□ 0.24
CAPN1-212ENST00000527887 ITGB8P26012 769 aa16.58■□□□□ 0.24
CAPN1-212ENST00000527887 CHMLP26374 656 aa16.58■□□□□ 0.24
CAPN1-212ENST00000527887 CALML3P27482 149 aa16.58■□□□□ 0.24
CAPN1-212ENST00000527887 IFIT1BQ5T764 474 aaKnown RBP16.58■□□□□ 0.24
CAPN1-212ENST00000527887 MFSD5Q6N075 450 aa16.58■□□□□ 0.24
CAPN1-212ENST00000527887 EEPD1Q7L9B9 569 aa16.58■□□□□ 0.24
CAPN1-212ENST00000527887 FAM126BQ8IXS8 530 aa16.58■□□□□ 0.24
CAPN1-212ENST00000527887 ADGRF4Q8IZF3 695 aa16.58■□□□□ 0.24
CAPN1-212ENST00000527887 WDR11Q9BZH6 1224 aa16.58■□□□□ 0.24
CAPN1-212ENST00000527887 UBA5Q9GZZ9 404 aa16.58■□□□□ 0.24
CAPN1-212ENST00000527887 PDGFCQ9NRA1 345 aa16.58■□□□□ 0.24
CAPN1-212ENST00000527887 IRX5P78411 483 aaPredicted RBP16.57■□□□□ 0.24
CAPN1-212ENST00000527887 BEX3Q00994 111 aa16.57■□□□□ 0.24
CAPN1-212ENST00000527887 PDE4DQ08499 809 aa16.57■□□□□ 0.24
CAPN1-212ENST00000527887 TRAF1Q13077 416 aa16.57■□□□□ 0.24
CAPN1-212ENST00000527887 CDC37Q16543 378 aaPredicted RBP16.57■□□□□ 0.24
CAPN1-212ENST00000527887 BRDTQ58F21 947 aaPredicted RBP16.57■□□□□ 0.24
CAPN1-212ENST00000527887 C9orf50Q5SZB4 431 aa16.57■□□□□ 0.24
CAPN1-212ENST00000527887 SLC30A10Q6XR72 485 aa16.57■□□□□ 0.24
CAPN1-212ENST00000527887 PURBQ96QR8 312 aaKnown RBP16.57■□□□□ 0.24
CAPN1-212ENST00000527887 POLR3EQ9NVU0 708 aa16.57■□□□□ 0.24
CAPN1-212ENST00000527887 MRPL11Q9Y3B7 192 aaKnown RBP16.57■□□□□ 0.24
CAPN1-212ENST00000527887 CD4P01730 458 aa16.56■□□□□ 0.24
CAPN1-212ENST00000527887 CPT1AP50416 773 aa16.56■□□□□ 0.24
CAPN1-212ENST00000527887 PPIGQ13427 754 aaKnown RBP eCLIP16.56■□□□□ 0.249e-9■■■□□ 18.3
CAPN1-212ENST00000527887 ITGA7Q13683 1181 aa16.56■□□□□ 0.24
CAPN1-212ENST00000527887 CXCL17Q6UXB2 119 aa16.56■□□□□ 0.24
CAPN1-212ENST00000527887 Q7L0L9 218 aa16.56■□□□□ 0.24
CAPN1-212ENST00000527887 TMEM199Q8N511 208 aa16.56■□□□□ 0.24
CAPN1-212ENST00000527887 SAMD3Q8N6K7 520 aa16.56■□□□□ 0.24
CAPN1-212ENST00000527887 SCFD2Q8WU76 684 aa16.56■□□□□ 0.24
CAPN1-212ENST00000527887 COL6A3P12111 3177 aa16.56■□□□□ 0.24
CAPN1-212ENST00000527887 TMEM265A0A087WTH1 108 aa16.55■□□□□ 0.24
CAPN1-212ENST00000527887 KPNA6O60684 536 aa16.55■□□□□ 0.24
CAPN1-212ENST00000527887 SART3Q15020 963 aaKnown RBP16.55■□□□□ 0.24
CAPN1-212ENST00000527887 SEC23AQ15436 765 aa16.55■□□□□ 0.24
CAPN1-212ENST00000527887 USH1GQ495M9 461 aa16.55■□□□□ 0.24
CAPN1-212ENST00000527887 ZNF697Q5TEC3 545 aa16.55■□□□□ 0.24
CAPN1-212ENST00000527887 FBXO11Q86XK2 927 aa16.55■□□□□ 0.24
CAPN1-212ENST00000527887 RNPC3Q96LT9 517 aaKnown RBP16.55■□□□□ 0.24
CAPN1-212ENST00000527887 IWS1Q96ST2 819 aa16.55■□□□□ 0.24
CAPN1-212ENST00000527887 IL25Q9H293 177 aa16.55■□□□□ 0.24
CAPN1-212ENST00000527887 MAP3K20Q9NYL2 800 aaKnown RBP16.55■□□□□ 0.24
CAPN1-212ENST00000527887 LTBP2Q14767 1821 aa16.54■□□□□ 0.24
CAPN1-212ENST00000527887 ERICH2A1L162 156 aa16.54■□□□□ 0.24
CAPN1-212ENST00000527887 SGSM2O43147 1006 aa16.54■□□□□ 0.24
CAPN1-212ENST00000527887 DHX16O60231 1041 aaKnown RBP16.54■□□□□ 0.24
CAPN1-212ENST00000527887 CYP21A2P08686 494 aa16.54■□□□□ 0.24
CAPN1-212ENST00000527887 PPP2R5BQ15173 497 aa16.54■□□□□ 0.24
CAPN1-212ENST00000527887 QRICH1Q2TAL8 776 aa16.54■□□□□ 0.24
CAPN1-212ENST00000527887 NSUN6Q8TEA1 469 aaKnown RBP16.54■□□□□ 0.24
CAPN1-212ENST00000527887 JMJD4Q9H9V9 463 aa16.54■□□□□ 0.24
CAPN1-212ENST00000527887 GPHNQ9NQX3 736 aaPredicted RBP16.54■□□□□ 0.24
CAPN1-212ENST00000527887 A0A0C4DFX4 3053 aa16.53■□□□□ 0.24
CAPN1-212ENST00000527887 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.53■□□□□ 0.24
CAPN1-212ENST00000527887 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.53■□□□□ 0.24
CAPN1-212ENST00000527887 KLRF2D3W0D1 207 aa16.53■□□□□ 0.24
CAPN1-212ENST00000527887 SUPT20HL2P0C7V6 817 aa16.53■□□□□ 0.24
CAPN1-212ENST00000527887 EPHB4P54760 987 aa16.53■□□□□ 0.24
CAPN1-212ENST00000527887 IRX6P78412 446 aaPredicted RBP16.53■□□□□ 0.24
CAPN1-212ENST00000527887 TTLL4Q14679 1199 aa16.53■□□□□ 0.24
CAPN1-212ENST00000527887 RALYLQ86SE5 291 aaKnown RBP16.53■□□□□ 0.24
CAPN1-212ENST00000527887 SLC17A8Q8NDX2 589 aa16.53■□□□□ 0.24
CAPN1-212ENST00000527887 OR6J1Q8NGC5 347 aa16.53■□□□□ 0.24
CAPN1-212ENST00000527887 NCOA7Q8NI08 942 aa16.53■□□□□ 0.24
CAPN1-212ENST00000527887 SYTL5Q8TDW5 730 aaPredicted RBP16.53■□□□□ 0.24
CAPN1-212ENST00000527887 MAP4K1Q92918 833 aa16.53■□□□□ 0.24
CAPN1-212ENST00000527887 MTMR8Q96EF0 704 aa16.53■□□□□ 0.24
CAPN1-212ENST00000527887 AMNQ9BXJ7 453 aa16.53■□□□□ 0.24
CAPN1-212ENST00000527887 CPVLQ9H3G5 476 aa16.53■□□□□ 0.24
CAPN1-212ENST00000527887 DDX49Q9Y6V7 483 aaKnown RBP16.53■□□□□ 0.24
CAPN1-212ENST00000527887 GRIN2DO15399 1336 aa16.52■□□□□ 0.24
CAPN1-212ENST00000527887 PALM3A6NDB9 673 aaPredicted RBP16.52■□□□□ 0.24
CAPN1-212ENST00000527887 A6NJR5 290 aa16.52■□□□□ 0.24
CAPN1-212ENST00000527887 GHRHRQ02643 423 aa16.52■□□□□ 0.24
CAPN1-212ENST00000527887 PTH1RQ03431 593 aa16.52■□□□□ 0.24
CAPN1-212ENST00000527887 STXBP2Q15833 593 aa16.52■□□□□ 0.24
CAPN1-212ENST00000527887 PSRC1Q6PGN9 363 aaPredicted RBP16.52■□□□□ 0.24
CAPN1-212ENST00000527887 CYB5R4Q7L1T6 521 aa16.52■□□□□ 0.24
CAPN1-212ENST00000527887 MTG1Q9BT17 334 aaPredicted RBP16.52■□□□□ 0.24
CAPN1-212ENST00000527887 MTA3Q9BTC8 594 aa16.52■□□□□ 0.24
CAPN1-212ENST00000527887 VAT1LQ9HCJ6 419 aa16.52■□□□□ 0.24
CAPN1-212ENST00000527887 MAD2L2Q9UI95 211 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms