RNA–Protein interactions for RNA: ENST00000527720.5

USH1C-207, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best) BASIC

Gene USH1C, Length 2,278 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-207ENST00000527720 ASIC1P78348 528 aa17.21■□□□□ 0.34
USH1C-207ENST00000527720 HDLBPQ00341 1268 aaKnown RBP17.21■□□□□ 0.34
USH1C-207ENST00000527720 PDE4DQ08499 809 aa17.21■□□□□ 0.34
USH1C-207ENST00000527720 ERCC6LQ2NKX8 1250 aa17.21■□□□□ 0.34
USH1C-207ENST00000527720 MB21D1Q8N884 522 aa17.21■□□□□ 0.34
USH1C-207ENST00000527720 P2RX5Q93086 422 aa17.21■□□□□ 0.34
USH1C-207ENST00000527720 GLT8D2Q9H1C3 349 aa17.21■□□□□ 0.34
USH1C-207ENST00000527720 MRPL44Q9H9J2 332 aaKnown RBP17.21■□□□□ 0.34
USH1C-207ENST00000527720 GPCPD1Q9NPB8 672 aa17.21■□□□□ 0.34
USH1C-207ENST00000527720 LRWD1Q9UFC0 647 aa17.21■□□□□ 0.34
USH1C-207ENST00000527720 DDX41Q9UJV9 622 aaKnown RBP17.21■□□□□ 0.34
USH1C-207ENST00000527720 H2AFXP16104 143 aaPredicted RBP17.2■□□□□ 0.34
USH1C-207ENST00000527720 TXKP42681 527 aa17.2■□□□□ 0.34
USH1C-207ENST00000527720 CRKP46108 304 aa17.2■□□□□ 0.34
USH1C-207ENST00000527720 DNM2P50570 870 aa17.2■□□□□ 0.34
USH1C-207ENST00000527720 MRPL12P52815 198 aaKnown RBP17.2■□□□□ 0.34
USH1C-207ENST00000527720 PMS1P54277 932 aaKnown RBP17.2■□□□□ 0.34
USH1C-207ENST00000527720 FBXO38Q6PIJ6 1188 aa17.2■□□□□ 0.34
USH1C-207ENST00000527720 SV2BQ7L1I2 683 aa17.2■□□□□ 0.34
USH1C-207ENST00000527720 ZNF507Q8TCN5 953 aa17.2■□□□□ 0.34
USH1C-207ENST00000527720 UBXN4Q92575 508 aa17.2■□□□□ 0.34
USH1C-207ENST00000527720 CUL5Q93034 780 aa17.2■□□□□ 0.34
USH1C-207ENST00000527720 NAP1L4Q99733 375 aaKnown RBP17.2■□□□□ 0.34
USH1C-207ENST00000527720 MRFAP1Q9Y605 127 aa17.2■□□□□ 0.34
USH1C-207ENST00000527720 PVALEFA0A1B0GWK0 134 aa17.19■□□□□ 0.34
USH1C-207ENST00000527720 ZBTB5O15062 677 aa17.19■□□□□ 0.34
USH1C-207ENST00000527720 EIF6P56537 245 aaKnown RBP17.19■□□□□ 0.34
USH1C-207ENST00000527720 SMAP1Q8IYB5 467 aaPredicted RBP17.19■□□□□ 0.34
USH1C-207ENST00000527720 LRRC27Q9C0I9 530 aa17.19■□□□□ 0.34
USH1C-207ENST00000527720 TADA3O75528 432 aa17.19■□□□□ 0.34
USH1C-207ENST00000527720 NPM3O75607 178 aaKnown RBP17.19■□□□□ 0.34
USH1C-207ENST00000527720 GCFC2P16383 781 aaKnown RBP17.19■□□□□ 0.34
USH1C-207ENST00000527720 GRB10Q13322 594 aa17.19■□□□□ 0.34
USH1C-207ENST00000527720 TUBB2AQ13885 445 aa17.19■□□□□ 0.34
USH1C-207ENST00000527720 CSGALNACT2Q8N6G5 542 aa17.19■□□□□ 0.34
USH1C-207ENST00000527720 DUSP9Q99956 384 aaKnown RBP17.19■□□□□ 0.34
USH1C-207ENST00000527720 TUBB2BQ9BVA1 445 aa17.19■□□□□ 0.34
USH1C-207ENST00000527720 MXD3Q9BW11 206 aa17.19■□□□□ 0.34
USH1C-207ENST00000527720 SCN9AQ15858 1988 aa17.19■□□□□ 0.34
USH1C-207ENST00000527720 EDIL3O43854 480 aa17.18■□□□□ 0.34
USH1C-207ENST00000527720 KIF5CO60282 957 aa17.18■□□□□ 0.34
USH1C-207ENST00000527720 KRT9P35527 623 aa17.18■□□□□ 0.34
USH1C-207ENST00000527720 STRIP1Q5VSL9 837 aa17.18■□□□□ 0.34
USH1C-207ENST00000527720 CREBRFQ8IUR6 639 aa17.18■□□□□ 0.34
USH1C-207ENST00000527720 MKL1Q969V6 931 aa17.18■□□□□ 0.34
USH1C-207ENST00000527720 CDK5RAP3Q96JB5 506 aa17.18■□□□□ 0.34
USH1C-207ENST00000527720 SLC37A4O43826 429 aa17.18■□□□□ 0.34
USH1C-207ENST00000527720 MMP10P09238 476 aa17.18■□□□□ 0.34
USH1C-207ENST00000527720 CLEC10AQ8IUN9 316 aa17.18■□□□□ 0.34
USH1C-207ENST00000527720 RETREG2Q8NC44 543 aa17.18■□□□□ 0.34
USH1C-207ENST00000527720 LRRN4CLQ8ND94 238 aa17.18■□□□□ 0.34
USH1C-207ENST00000527720 LARP4BQ92615 738 aaKnown RBP17.18■□□□□ 0.34
USH1C-207ENST00000527720 NUP58Q9BVL2 599 aa17.18■□□□□ 0.34
USH1C-207ENST00000527720 CARD6Q9BX69 1037 aa17.18■□□□□ 0.34
USH1C-207ENST00000527720 IDI2Q9BXS1 227 aa17.18■□□□□ 0.34
USH1C-207ENST00000527720 BLOC1S4Q9NUP1 217 aa17.18■□□□□ 0.34
USH1C-207ENST00000527720 MYO1AQ9UBC5 1043 aa17.18■□□□□ 0.34
USH1C-207ENST00000527720 MPHOSPH10O00566 681 aaKnown RBP17.17■□□□□ 0.34
USH1C-207ENST00000527720 PPP1R11O60927 126 aaPredicted RBP17.17■□□□□ 0.34
USH1C-207ENST00000527720 TDP2O95551 362 aa17.17■□□□□ 0.34
USH1C-207ENST00000527720 ERVK-24P63145 666 aa17.17■□□□□ 0.34
USH1C-207ENST00000527720 STK4Q13043 487 aa17.17■□□□□ 0.34
USH1C-207ENST00000527720 CCDC96Q2M329 555 aa17.17■□□□□ 0.34
USH1C-207ENST00000527720 UNC13DQ70J99 1090 aa17.17■□□□□ 0.34
USH1C-207ENST00000527720 DCAF4Q8WV16 495 aa17.17■□□□□ 0.34
USH1C-207ENST00000527720 PKNOX2Q96KN3 472 aa17.17■□□□□ 0.34
USH1C-207ENST00000527720 PNMA5Q96PV4 448 aa17.17■□□□□ 0.34
USH1C-207ENST00000527720 DNAJC7Q99615 494 aa17.17■□□□□ 0.34
USH1C-207ENST00000527720 NYAP2Q9P242 653 aa17.17■□□□□ 0.34
USH1C-207ENST00000527720 CAPN11Q9UMQ6 739 aa17.17■□□□□ 0.34
USH1C-207ENST00000527720 CBX1P83916 185 aa17.17■□□□□ 0.34
USH1C-207ENST00000527720 NFIAQ12857 509 aa17.17■□□□□ 0.34
USH1C-207ENST00000527720 ARHGAP29Q52LW3 1261 aa17.17■□□□□ 0.34
USH1C-207ENST00000527720 KRT79Q5XKE5 535 aa17.17■□□□□ 0.34
USH1C-207ENST00000527720 OR8K1Q8NGG5 319 aa17.17■□□□□ 0.34
USH1C-207ENST00000527720 TUBGCP2Q9BSJ2 902 aa17.17■□□□□ 0.34
USH1C-207ENST00000527720 LZTFL1Q9NQ48 299 aa17.17■□□□□ 0.34
USH1C-207ENST00000527720 PI4KBQ9UBF8 816 aa17.17■□□□□ 0.34
USH1C-207ENST00000527720 LUC7L2Q9Y383 392 aaKnown RBP17.17■□□□□ 0.34
USH1C-207ENST00000527720 RGPD3A6NKT7 1758 aaPredicted RBP17.16■□□□□ 0.34
USH1C-207ENST00000527720 RGPD4Q7Z3J3 1758 aa17.16■□□□□ 0.34
USH1C-207ENST00000527720 SLC26A4O43511 780 aa17.16■□□□□ 0.34
USH1C-207ENST00000527720 TNNI2P48788 182 aa17.16■□□□□ 0.34
USH1C-207ENST00000527720 ANKRD40Q6AI12 368 aa17.16■□□□□ 0.34
USH1C-207ENST00000527720 TTBK2Q6IQ55 1244 aa17.16■□□□□ 0.34
USH1C-207ENST00000527720 STYK1Q6J9G0 422 aa17.16■□□□□ 0.34
USH1C-207ENST00000527720 IQCDQ96DY2 449 aa17.16■□□□□ 0.34
USH1C-207ENST00000527720 ARGLU1Q9NWB6 273 aaPredicted RBP17.16■□□□□ 0.34
USH1C-207ENST00000527720 SLX4Q8IY92 1834 aa17.16■□□□□ 0.34
USH1C-207ENST00000527720 RNF225M0QZC1 329 aaPredicted RBP17.16■□□□□ 0.34
USH1C-207ENST00000527720 TMEM119Q4V9L6 283 aa17.16■□□□□ 0.34
USH1C-207ENST00000527720 CENPPQ6IPU0 288 aa17.16■□□□□ 0.34
USH1C-207ENST00000527720 FOXR2Q6PJQ5 311 aa17.16■□□□□ 0.34
USH1C-207ENST00000527720 RAD54LQ92698 747 aa17.16■□□□□ 0.34
USH1C-207ENST00000527720 DNAJC18Q9H819 358 aa17.16■□□□□ 0.34
USH1C-207ENST00000527720 PSTPIP2Q9H939 334 aa17.16■□□□□ 0.34
USH1C-207ENST00000527720 KANSL2Q9H9L4 492 aa17.16■□□□□ 0.34
USH1C-207ENST00000527720 ATF5Q9Y2D1 282 aaPredicted RBP17.16■□□□□ 0.34
USH1C-207ENST00000527720 TTC26A0AVF1 554 aa17.15■□□□□ 0.34
USH1C-207ENST00000527720 SPDYE4A6NLX3 237 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms