RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 UBE3BQ7Z3V4 1068 aa6.46□□□□□ -1.38
CD44-225ENST00000527326 CCDC65Q8IXS2 484 aa6.46□□□□□ -1.38
CD44-225ENST00000527326 LMNTD2Q8IXW0 634 aa6.46□□□□□ -1.38
CD44-225ENST00000527326 SYCP3Q8IZU3 236 aa6.46□□□□□ -1.38
CD44-225ENST00000527326 AOPEPQ8N6M6 819 aa6.46□□□□□ -1.38
CD44-225ENST00000527326 PPP2R3CQ969Q6 453 aa6.46□□□□□ -1.38
CD44-225ENST00000527326 SLC35B4Q969S0 331 aa6.46□□□□□ -1.38
CD44-225ENST00000527326 DHRS1Q96LJ7 313 aa6.46□□□□□ -1.38
CD44-225ENST00000527326 CCDC85AQ96PX6 553 aaPredicted RBP6.46□□□□□ -1.38
CD44-225ENST00000527326 OSBPL1AQ9BXW6 950 aa6.46□□□□□ -1.38
CD44-225ENST00000527326 VCX3BQ9H321 246 aa6.46□□□□□ -1.38
CD44-225ENST00000527326 VCX3AQ9NNX9 186 aa6.46□□□□□ -1.38
CD44-225ENST00000527326 HAUS2Q9NVX0 235 aa6.46□□□□□ -1.38
CD44-225ENST00000527326 SLC5A4Q9NY91 659 aa6.46□□□□□ -1.38
CD44-225ENST00000527326 IFNKQ9P0W0 207 aa6.46□□□□□ -1.38
CD44-225ENST00000527326 HDAC6Q9UBN7 1215 aa6.46□□□□□ -1.38
CD44-225ENST00000527326 CTNNAL1Q9UBT7 734 aa6.46□□□□□ -1.38
CD44-225ENST00000527326 DDX25Q9UHL0 483 aaKnown RBP6.46□□□□□ -1.38
CD44-225ENST00000527326 TMED5Q9Y3A6 229 aa6.46□□□□□ -1.38
CD44-225ENST00000527326 MAFBQ9Y5Q3 323 aaPredicted RBP6.46□□□□□ -1.38
CD44-225ENST00000527326 ATP10BO94823 1461 aa6.46□□□□□ -1.38
CD44-225ENST00000527326 A2MP01023 1474 aa6.46□□□□□ -1.38
CD44-225ENST00000527326 ZNF518AQ6AHZ1 1483 aa6.46□□□□□ -1.38
CD44-225ENST00000527326 ABCC4O15439 1325 aa6.46□□□□□ -1.38
CD44-225ENST00000527326 UBN2Q6ZU65 1347 aa6.46□□□□□ -1.38
CD44-225ENST00000527326 ZC3H13Q5T200 1668 aaKnown RBP6.45□□□□□ -1.38
CD44-225ENST00000527326 LMTK2Q8IWU2 1503 aa6.45□□□□□ -1.38
CD44-225ENST00000527326 KDM6AO15550 1401 aaPredicted RBP6.45□□□□□ -1.38
CD44-225ENST00000527326 CTAGE9A4FU28 777 aa6.45□□□□□ -1.38
CD44-225ENST00000527326 VPS37CA5D8V6 355 aaPredicted RBP6.45□□□□□ -1.38
CD44-225ENST00000527326 LRRC10BA6NIK2 292 aa6.45□□□□□ -1.38
CD44-225ENST00000527326 SPATA31C2B4DYI2 1134 aa6.45□□□□□ -1.38
CD44-225ENST00000527326 WASLO00401 505 aaPredicted RBP6.45□□□□□ -1.38
CD44-225ENST00000527326 IKBKBO14920 756 aa6.45□□□□□ -1.38
CD44-225ENST00000527326 MBD4O95243 580 aa6.45□□□□□ -1.38
CD44-225ENST00000527326 ANP32DO95626 131 aa6.45□□□□□ -1.38
CD44-225ENST00000527326 FAM107AO95990 144 aa6.45□□□□□ -1.38
CD44-225ENST00000527326 F11P03951 625 aa6.45□□□□□ -1.38
CD44-225ENST00000527326 CELA2BP08218 269 aaPredicted RBP6.45□□□□□ -1.38
CD44-225ENST00000527326 RHOXF2BP0C7M4 288 aa6.45□□□□□ -1.38
CD44-225ENST00000527326 ALADP13716 330 aa6.45□□□□□ -1.38
CD44-225ENST00000527326 CCND1P24385 295 aa6.45□□□□□ -1.38
CD44-225ENST00000527326 SOX11P35716 441 aa6.45□□□□□ -1.38
CD44-225ENST00000527326 MAGEA10P43363 369 aaPredicted RBP6.45□□□□□ -1.38
CD44-225ENST00000527326 USP14P54578 494 aa6.45□□□□□ -1.38
CD44-225ENST00000527326 HSPA2P54652 639 aa6.45□□□□□ -1.38
CD44-225ENST00000527326 INHBCP55103 352 aa6.45□□□□□ -1.38
CD44-225ENST00000527326 ELF3P78545 371 aaPredicted RBP6.45□□□□□ -1.38
CD44-225ENST00000527326 PHEXP78562 749 aa6.45□□□□□ -1.38
CD44-225ENST00000527326 AKAP17AQ02040 695 aaKnown RBP6.45□□□□□ -1.38
CD44-225ENST00000527326 CENPCQ03188 943 aa6.45□□□□□ -1.38
CD44-225ENST00000527326 KRT72Q14CN4 511 aa6.45□□□□□ -1.38
CD44-225ENST00000527326 IFI16Q16666 785 aaKnown RBP6.45□□□□□ -1.38
CD44-225ENST00000527326 ACCSLQ4AC99 568 aa6.45□□□□□ -1.38
CD44-225ENST00000527326 WDR44Q5JSH3 913 aa6.45□□□□□ -1.38
CD44-225ENST00000527326 GJC2Q5T442 439 aaPredicted RBP6.45□□□□□ -1.38
CD44-225ENST00000527326 CCDC73Q6ZRK6 1079 aa6.45□□□□□ -1.38
CD44-225ENST00000527326 TAS1R3Q7RTX0 852 aa6.45□□□□□ -1.38
CD44-225ENST00000527326 SIRT2Q8IXJ6 389 aa6.45□□□□□ -1.38
CD44-225ENST00000527326 RPAP2Q8IXW5 612 aaPredicted RBP6.45□□□□□ -1.38
CD44-225ENST00000527326 ANKRD44Q8N8A2 993 aa6.45□□□□□ -1.38
CD44-225ENST00000527326 ZBTB8BQ8NAP8 495 aaPredicted RBP6.45□□□□□ -1.38
CD44-225ENST00000527326 C1orf131Q8NDD1 294 aaKnown RBP6.45□□□□□ -1.38
CD44-225ENST00000527326 DYDC1Q8WWB3 177 aa6.45□□□□□ -1.38
CD44-225ENST00000527326 STAMBPL1Q96FJ0 436 aa6.45□□□□□ -1.38
CD44-225ENST00000527326 ZNF570Q96NI8 536 aa6.45□□□□□ -1.38
CD44-225ENST00000527326 NAP1L3Q99457 506 aaPredicted RBP6.45□□□□□ -1.38
CD44-225ENST00000527326 RHOXF2Q9BQY4 288 aa6.45□□□□□ -1.38
CD44-225ENST00000527326 API5Q9BZZ5 524 aaKnown RBP6.45□□□□□ -1.38
CD44-225ENST00000527326 BRD8Q9H0E9 1235 aa6.45□□□□□ -1.38
CD44-225ENST00000527326 GOLPH3LQ9H4A5 285 aa6.45□□□□□ -1.38
CD44-225ENST00000527326 NRDE2Q9H7Z3 1164 aa6.45□□□□□ -1.38
CD44-225ENST00000527326 SUGCTQ9HAC7 445 aa6.45□□□□□ -1.38
CD44-225ENST00000527326 PCDH18Q9HCL0 1135 aa6.45□□□□□ -1.38
CD44-225ENST00000527326 DMAP1Q9NPF5 467 aaPredicted RBP6.45□□□□□ -1.38
CD44-225ENST00000527326 MBIPQ9NS73 344 aa6.45□□□□□ -1.38
CD44-225ENST00000527326 AATFQ9NY61 560 aaKnown RBP eCLIP6.45□□□□□ -1.38
CD44-225ENST00000527326 TUBGCP4Q9UGJ1 667 aa6.45□□□□□ -1.38
CD44-225ENST00000527326 PUF60Q9UHX1 559 aaKnown RBP6.45□□□□□ -1.38
CD44-225ENST00000527326 RRP7AQ9Y3A4 280 aaKnown RBP6.45□□□□□ -1.38
CD44-225ENST00000527326 SLC4A7Q9Y6M7 1214 aa6.45□□□□□ -1.38
CD44-225ENST00000527326 USP32Q8NFA0 1604 aa6.45□□□□□ -1.38
CD44-225ENST00000527326 CDK13Q14004 1512 aaKnown RBP6.45□□□□□ -1.38
CD44-225ENST00000527326 ATG7O95352 703 aa6.44□□□□□ -1.38
CD44-225ENST00000527326 IL2RAP01589 272 aa6.44□□□□□ -1.38
CD44-225ENST00000527326 GSTA2P09210 222 aa6.44□□□□□ -1.38
CD44-225ENST00000527326 TROVE2P10155 538 aaKnown RBP eCLIP6.44□□□□□ -1.38
CD44-225ENST00000527326 BCRP11274 1271 aa6.44□□□□□ -1.38
CD44-225ENST00000527326 TOP1P11387 765 aaKnown RBP6.44□□□□□ -1.38
CD44-225ENST00000527326 STIP1P31948 543 aaKnown RBP6.44□□□□□ -1.38
CD44-225ENST00000527326 LSP1P33241 339 aa6.44□□□□□ -1.38
CD44-225ENST00000527326 CKAP4Q07065 602 aaKnown RBP6.44□□□□□ -1.38
CD44-225ENST00000527326 ADCY1Q08828 1119 aa6.44□□□□□ -1.38
CD44-225ENST00000527326 KIF5AQ12840 1032 aa6.44□□□□□ -1.38
CD44-225ENST00000527326 PTGISQ16647 500 aa6.44□□□□□ -1.38
CD44-225ENST00000527326 PPP4R3AQ6IN85 833 aa6.44□□□□□ -1.38
CD44-225ENST00000527326 CCDC70Q6NSX1 233 aa6.44□□□□□ -1.38
CD44-225ENST00000527326 OLFML1Q6UWY5 402 aa6.44□□□□□ -1.38
CD44-225ENST00000527326 BICDL1Q6ZP65 573 aa6.44□□□□□ -1.38
CD44-225ENST00000527326 ARHGEF25Q86VW2 580 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms