RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 A0A1W2PQ45 241 aaPredicted RBP23.97■■□□□ 1.43
VPS28-206ENST00000526734 A0A1W2PQY0 241 aa23.97■■□□□ 1.43
VPS28-206ENST00000526734 SMCHD1A6NHR9 2005 aa23.97■■□□□ 1.43
VPS28-206ENST00000526734 SLC34A2O95436 690 aa23.97■■□□□ 1.43
VPS28-206ENST00000526734 C6orf222P0C671 652 aaPredicted RBP23.97■■□□□ 1.43
VPS28-206ENST00000526734 EDNRBP24530 442 aa23.97■■□□□ 1.43
VPS28-206ENST00000526734 KIF5BP33176 963 aa23.97■■□□□ 1.43
VPS28-206ENST00000526734 CCSAPQ6IQ19 270 aaPredicted RBP23.97■■□□□ 1.43
VPS28-206ENST00000526734 CHST3Q7LGC8 479 aa23.97■■□□□ 1.43
VPS28-206ENST00000526734 FERMT2Q96AC1 680 aa23.97■■□□□ 1.43
VPS28-206ENST00000526734 RIOX1Q9H6W3 641 aa23.97■■□□□ 1.43
VPS28-206ENST00000526734 LY9Q9HBG7 655 aa23.97■■□□□ 1.43
VPS28-206ENST00000526734 MAP3K20Q9NYL2 800 aaKnown RBP23.97■■□□□ 1.43
VPS28-206ENST00000526734 ATP11BQ9Y2G3 1177 aa23.97■■□□□ 1.43
VPS28-206ENST00000526734 SYN1P17600 705 aa23.96■■□□□ 1.43
VPS28-206ENST00000526734 LIFRP42702 1097 aa23.96■■□□□ 1.43
VPS28-206ENST00000526734 PDE4DQ08499 809 aa23.96■■□□□ 1.43
VPS28-206ENST00000526734 TAPT1Q6NXT6 567 aa23.96■■□□□ 1.43
VPS28-206ENST00000526734 NOL8Q76FK4 1167 aaKnown RBP23.96■■□□□ 1.43
VPS28-206ENST00000526734 FBXO16Q8IX29 292 aaPredicted RBP23.96■■□□□ 1.43
VPS28-206ENST00000526734 CTCFLQ8NI51 663 aaPredicted RBP23.96■■□□□ 1.43
VPS28-206ENST00000526734 GLT1D1Q96MS3 346 aa23.96■■□□□ 1.43
VPS28-206ENST00000526734 AP5M1Q9H0R1 490 aa23.96■■□□□ 1.43
VPS28-206ENST00000526734 GNEQ9Y223 722 aaKnown RBP23.96■■□□□ 1.43
VPS28-206ENST00000526734 MCM3APO60318 1980 aa23.96■■□□□ 1.43
VPS28-206ENST00000526734 ELP1O95163 1332 aa23.95■■□□□ 1.42
VPS28-206ENST00000526734 LCTP09848 1927 aa23.95■■□□□ 1.42
VPS28-206ENST00000526734 SH2B2O14492 632 aaPredicted RBP23.95■■□□□ 1.42
VPS28-206ENST00000526734 ADCY6O43306 1168 aa23.95■■□□□ 1.42
VPS28-206ENST00000526734 CALM1P0DP23 149 aa23.95■■□□□ 1.42
VPS28-206ENST00000526734 CALM2P0DP24 149 aa23.95■■□□□ 1.42
VPS28-206ENST00000526734 CALM3P0DP25 149 aa23.95■■□□□ 1.42
VPS28-206ENST00000526734 GHRHRQ02643 423 aa23.95■■□□□ 1.42
VPS28-206ENST00000526734 KRT32Q14532 448 aa23.95■■□□□ 1.42
VPS28-206ENST00000526734 KCNA10Q16322 511 aa23.95■■□□□ 1.42
VPS28-206ENST00000526734 TLK2Q86UE8 772 aa23.95■■□□□ 1.42
VPS28-206ENST00000526734 ZNF654Q8IZM8 581 aa23.95■■□□□ 1.42
VPS28-206ENST00000526734 PURBQ96QR8 312 aaKnown RBP23.95■■□□□ 1.42
VPS28-206ENST00000526734 SENP2Q9HC62 589 aa23.95■■□□□ 1.42
VPS28-206ENST00000526734 STARD7Q9NQZ5 370 aa23.95■■□□□ 1.42
VPS28-206ENST00000526734 RBM47A0AV96 593 aaKnown RBP23.94■■□□□ 1.42
VPS28-206ENST00000526734 CCDC69A6NI79 296 aa23.94■■□□□ 1.42
VPS28-206ENST00000526734 ZEB2O60315 1214 aa23.94■■□□□ 1.42
VPS28-206ENST00000526734 SMARCA1P28370 1054 aa23.94■■□□□ 1.42
VPS28-206ENST00000526734 GNAQP50148 359 aa23.94■■□□□ 1.42
VPS28-206ENST00000526734 TSGA10IPQ3SY00 556 aa23.94■■□□□ 1.42
VPS28-206ENST00000526734 TRIM60Q495X7 471 aa23.94■■□□□ 1.42
VPS28-206ENST00000526734 GNASQ5JWF2 1037 aa23.94■■□□□ 1.42
VPS28-206ENST00000526734 NSUN6Q8TEA1 469 aaKnown RBP23.94■■□□□ 1.42
VPS28-206ENST00000526734 LZTS2Q9BRK4 669 aa23.94■■□□□ 1.42
VPS28-206ENST00000526734 C11orf97A0A1B0GVM6 126 aaPredicted RBP23.93■■□□□ 1.42
VPS28-206ENST00000526734 NKRFO15226 690 aaKnown RBP eCLIP23.93■■□□□ 1.42
VPS28-206ENST00000526734 CABYRO75952 493 aa23.93■■□□□ 1.42
VPS28-206ENST00000526734 CENPBP07199 599 aaPredicted RBP23.93■■□□□ 1.42
VPS28-206ENST00000526734 SMPD1P17405 629 aa23.93■■□□□ 1.42
VPS28-206ENST00000526734 MAGEA10P43363 369 aaPredicted RBP23.93■■□□□ 1.42
VPS28-206ENST00000526734 DUSP28Q4G0W2 176 aa23.93■■□□□ 1.42
VPS28-206ENST00000526734 NFXL1Q6ZNB6 911 aa23.93■■□□□ 1.42
VPS28-206ENST00000526734 EEPD1Q7L9B9 569 aa23.93■■□□□ 1.42
VPS28-206ENST00000526734 SYTL5Q8TDW5 730 aaPredicted RBP23.93■■□□□ 1.42
VPS28-206ENST00000526734 IWS1Q96ST2 819 aa23.93■■□□□ 1.42
VPS28-206ENST00000526734 LBHD1Q9BQE6 289 aaPredicted RBP23.93■■□□□ 1.42
VPS28-206ENST00000526734 SPZ1Q9BXG8 430 aa23.93■■□□□ 1.42
VPS28-206ENST00000526734 PCDHA1Q9Y5I3 950 aa23.93■■□□□ 1.42
VPS28-206ENST00000526734 MROH7Q68CQ1 1323 aa23.92■■□□□ 1.42
VPS28-206ENST00000526734 PNMA6FA0A0J9YX94 578 aa23.92■■□□□ 1.42
VPS28-206ENST00000526734 MYADML2A6NDP7 307 aa23.92■■□□□ 1.42
VPS28-206ENST00000526734 ASGR1P07306 291 aa23.92■■□□□ 1.42
VPS28-206ENST00000526734 SCFD2Q8WU76 684 aa23.92■■□□□ 1.42
VPS28-206ENST00000526734 TOX2Q96NM4 488 aa23.92■■□□□ 1.42
VPS28-206ENST00000526734 NEK1Q96PY6 1258 aa23.92■■□□□ 1.42
VPS28-206ENST00000526734 SEZ6LQ9BYH1 1024 aa23.92■■□□□ 1.42
VPS28-206ENST00000526734 PDGFCQ9NRA1 345 aa23.92■■□□□ 1.42
VPS28-206ENST00000526734 FXR1P51114 621 aaKnown RBP eCLIP23.91■■□□□ 1.42
VPS28-206ENST00000526734 HSD17B4P51659 736 aa23.91■■□□□ 1.42
VPS28-206ENST00000526734 FSCN1Q16658 493 aaKnown RBP23.91■■□□□ 1.42
VPS28-206ENST00000526734 HOMER1Q86YM7 354 aa23.91■■□□□ 1.42
VPS28-206ENST00000526734 WDR11Q9BZH6 1224 aa23.91■■□□□ 1.42
VPS28-206ENST00000526734 PPP4R2Q9NY27 417 aa23.91■■□□□ 1.42
VPS28-206ENST00000526734 A0A0U1RQG5 324 aaPredicted RBP23.9■■□□□ 1.42
VPS28-206ENST00000526734 CTAGE5O15320 804 aa23.9■■□□□ 1.42
VPS28-206ENST00000526734 HMGB1P09429 215 aaKnown RBP23.9■■□□□ 1.42
VPS28-206ENST00000526734 TLE2Q04725 743 aa23.9■■□□□ 1.42
VPS28-206ENST00000526734 PPP2R5BQ15173 497 aa23.9■■□□□ 1.42
VPS28-206ENST00000526734 ANKRD33Q7Z3H0 272 aa23.9■■□□□ 1.42
VPS28-206ENST00000526734 SGMS1Q86VZ5 419 aa23.9■■□□□ 1.42
VPS28-206ENST00000526734 PIGSQ96S52 555 aa23.9■■□□□ 1.42
VPS28-206ENST00000526734 PDLIM7Q9NR12 457 aa23.9■■□□□ 1.42
VPS28-206ENST00000526734 SLC12A7Q9Y666 1083 aa23.9■■□□□ 1.42
VPS28-206ENST00000526734 DDX49Q9Y6V7 483 aaKnown RBP23.9■■□□□ 1.42
VPS28-206ENST00000526734 DCDC2CA8MYV0 355 aa23.89■■□□□ 1.41
VPS28-206ENST00000526734 DYNC1LI2O43237 492 aaPredicted RBP23.89■■□□□ 1.41
VPS28-206ENST00000526734 CYTH3O43739 400 aa23.89■■□□□ 1.41
VPS28-206ENST00000526734 PPP1R11O60927 126 aaPredicted RBP23.89■■□□□ 1.41
VPS28-206ENST00000526734 REC8O95072 547 aa23.89■■□□□ 1.41
VPS28-206ENST00000526734 CFBP00751 764 aa23.89■■□□□ 1.41
VPS28-206ENST00000526734 CLTBP09497 229 aa23.89■■□□□ 1.41
VPS28-206ENST00000526734 SLC35G1Q2M3R5 365 aa23.89■■□□□ 1.41
VPS28-206ENST00000526734 RRP36Q96EU6 259 aaKnown RBP23.89■■□□□ 1.41
VPS28-206ENST00000526734 RMDN3Q96TC7 470 aa23.89■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 110.6 ms