RNA–Protein interactions for RNA: ENST00000526430.1

NEDD8-204, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 3

Gene NEDD8, Length 286 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-204ENST00000526430 CCDC171Q6TFL3 1326 aa12.93□□□□□ -0.34
NEDD8-204ENST00000526430 FAM186AA6NE01 2351 aa12.93□□□□□ -0.34
NEDD8-204ENST00000526430 KIF28PB7ZC32 967 aa12.93□□□□□ -0.34
NEDD8-204ENST00000526430 USP17L12C9JPN9 530 aa12.93□□□□□ -0.34
NEDD8-204ENST00000526430 USP17L21D6R901 530 aa12.93□□□□□ -0.34
NEDD8-204ENST00000526430 HIP1O00291 1037 aa12.93□□□□□ -0.34
NEDD8-204ENST00000526430 VWA5AO00534 786 aa12.93□□□□□ -0.34
NEDD8-204ENST00000526430 FGAP02671 866 aa12.93□□□□□ -0.34
NEDD8-204ENST00000526430 SBK1Q52WX2 424 aa12.93□□□□□ -0.34
NEDD8-204ENST00000526430 PTCRAQ6ISU1 281 aaPredicted RBP12.93□□□□□ -0.34
NEDD8-204ENST00000526430 GIMAP6Q6P9H5 292 aa12.93□□□□□ -0.34
NEDD8-204ENST00000526430 TMEM179Q6ZVK1 233 aa12.93□□□□□ -0.34
NEDD8-204ENST00000526430 HFE2Q6ZVN8 426 aa12.93□□□□□ -0.34
NEDD8-204ENST00000526430 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.93□□□□□ -0.34
NEDD8-204ENST00000526430 HERC6Q8IVU3 1022 aa12.93□□□□□ -0.34
NEDD8-204ENST00000526430 REPS2Q8NFH8 660 aa12.93□□□□□ -0.34
NEDD8-204ENST00000526430 SCLYQ96I15 445 aa12.93□□□□□ -0.34
NEDD8-204ENST00000526430 ESYT1Q9BSJ8 1104 aa12.93□□□□□ -0.34
NEDD8-204ENST00000526430 ARHGEF10LQ9HCE6 1279 aa12.93□□□□□ -0.34
NEDD8-204ENST00000526430 DIAPH3Q9NSV4 1193 aa12.93□□□□□ -0.34
NEDD8-204ENST00000526430 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.93□□□□□ -0.34
NEDD8-204ENST00000526430 RIF1Q5UIP0 2472 aaKnown RBP12.93□□□□□ -0.34
NEDD8-204ENST00000526430 DCHS1Q96JQ0 3298 aa12.92□□□□□ -0.34
NEDD8-204ENST00000526430 GRXCR2A6NFK2 248 aa12.92□□□□□ -0.34
NEDD8-204ENST00000526430 IL9P15248 144 aa12.92□□□□□ -0.34
NEDD8-204ENST00000526430 GNAT2P19087 354 aa12.92□□□□□ -0.34
NEDD8-204ENST00000526430 RFC2P35250 354 aa12.92□□□□□ -0.34
NEDD8-204ENST00000526430 PTPN5P54829 565 aa12.92□□□□□ -0.34
NEDD8-204ENST00000526430 CACNA1BQ00975 2339 aa12.92□□□□□ -0.34
NEDD8-204ENST00000526430 CXCL17Q6UXB2 119 aa12.92□□□□□ -0.34
NEDD8-204ENST00000526430 SPICE1Q8N0Z3 855 aa12.92□□□□□ -0.34
NEDD8-204ENST00000526430 PRRX2Q99811 253 aa12.92□□□□□ -0.34
NEDD8-204ENST00000526430 TRPV6Q9H1D0 765 aa12.92□□□□□ -0.34
NEDD8-204ENST00000526430 MCM9Q9NXL9 1143 aa12.92□□□□□ -0.34
NEDD8-204ENST00000526430 MPHOSPH10O00566 681 aaKnown RBP12.91□□□□□ -0.34
NEDD8-204ENST00000526430 CDC45O75419 566 aa12.91□□□□□ -0.34
NEDD8-204ENST00000526430 KCNA5P22460 613 aa12.91□□□□□ -0.34
NEDD8-204ENST00000526430 SIAH1Q8IUQ4 282 aa12.91□□□□□ -0.34
NEDD8-204ENST00000526430 GDPD5Q8WTR4 605 aa12.91□□□□□ -0.34
NEDD8-204ENST00000526430 MAP4K1Q92918 833 aa12.91□□□□□ -0.34
NEDD8-204ENST00000526430 DDX11Q96FC9 970 aa12.91□□□□□ -0.34
NEDD8-204ENST00000526430 DYNLL2Q96FJ2 89 aa12.91□□□□□ -0.34
NEDD8-204ENST00000526430 TEX13BQ9BXU2 312 aa12.91□□□□□ -0.34
NEDD8-204ENST00000526430 KATNBL1Q9H079 304 aa12.91□□□□□ -0.34
NEDD8-204ENST00000526430 LSG1Q9H089 658 aaKnown RBP12.91□□□□□ -0.34
NEDD8-204ENST00000526430 INCENPQ9NQS7 918 aa12.91□□□□□ -0.34
NEDD8-204ENST00000526430 PRKAG3Q9UGI9 489 aa12.91□□□□□ -0.34
NEDD8-204ENST00000526430 PPP1R9AQ9ULJ8 1098 aa12.91□□□□□ -0.34
NEDD8-204ENST00000526430 ASTN1O14525 1302 aa12.9□□□□□ -0.34
NEDD8-204ENST00000526430 RAD50Q92878 1312 aa12.9□□□□□ -0.34
NEDD8-204ENST00000526430 LCTP09848 1927 aa12.9□□□□□ -0.34
NEDD8-204ENST00000526430 MICAL3Q7RTP6 2002 aa12.9□□□□□ -0.34
NEDD8-204ENST00000526430 C19orf67A6NJJ6 358 aa12.9□□□□□ -0.34
NEDD8-204ENST00000526430 BAIAP3O94812 1187 aa12.9□□□□□ -0.34
NEDD8-204ENST00000526430 BEX3Q00994 111 aa12.9□□□□□ -0.34
NEDD8-204ENST00000526430 PRSS33Q8NF86 280 aa12.9□□□□□ -0.34
NEDD8-204ENST00000526430 FGD4Q96M96 766 aa12.9□□□□□ -0.34
NEDD8-204ENST00000526430 DSCC1Q9BVC3 393 aa12.9□□□□□ -0.34
NEDD8-204ENST00000526430 FBXO28Q9NVF7 368 aa12.9□□□□□ -0.34
NEDD8-204ENST00000526430 TAF6LQ9Y6J9 622 aa12.9□□□□□ -0.34
NEDD8-204ENST00000526430 RALGAPA2Q2PPJ7 1873 aa12.9□□□□□ -0.34
NEDD8-204ENST00000526430 FGRP09769 529 aa12.89□□□□□ -0.35
NEDD8-204ENST00000526430 SUPT20HL2P0C7V6 817 aa12.89□□□□□ -0.35
NEDD8-204ENST00000526430 ICA1Q05084 483 aa12.89□□□□□ -0.35
NEDD8-204ENST00000526430 ZP2Q05996 745 aa12.89□□□□□ -0.35
NEDD8-204ENST00000526430 FSCN1Q16658 493 aaKnown RBP12.89□□□□□ -0.35
NEDD8-204ENST00000526430 ARMCX2Q7L311 632 aa12.89□□□□□ -0.35
NEDD8-204ENST00000526430 SPRED2Q7Z698 418 aa12.89□□□□□ -0.35
NEDD8-204ENST00000526430 DEFB128Q7Z7B8 93 aa12.89□□□□□ -0.35
NEDD8-204ENST00000526430 NEK9Q8TD19 979 aa12.89□□□□□ -0.35
NEDD8-204ENST00000526430 UPF3BQ9BZI7 483 aaKnown RBP12.89□□□□□ -0.35
NEDD8-204ENST00000526430 ALDH8A1Q9H2A2 487 aaPredicted RBP12.89□□□□□ -0.35
NEDD8-204ENST00000526430 ANAPC4Q9UJX5 808 aa12.89□□□□□ -0.35
NEDD8-204ENST00000526430 GNEQ9Y223 722 aaKnown RBP12.89□□□□□ -0.35
NEDD8-204ENST00000526430 TNKSO95271 1327 aa12.88□□□□□ -0.35
NEDD8-204ENST00000526430 ZMYM6O95789 1325 aa12.88□□□□□ -0.35
NEDD8-204ENST00000526430 MYO7AQ13402 2215 aa12.88□□□□□ -0.35
NEDD8-204ENST00000526430 MYO15AQ9UKN7 3530 aa12.88□□□□□ -0.35
NEDD8-204ENST00000526430 PITPNM1O00562 1244 aa12.88□□□□□ -0.35
NEDD8-204ENST00000526430 ZEB2O60315 1214 aa12.88□□□□□ -0.35
NEDD8-204ENST00000526430 SEC24BO95487 1268 aa12.88□□□□□ -0.35
NEDD8-204ENST00000526430 APPP05067 770 aa12.88□□□□□ -0.35
NEDD8-204ENST00000526430 POLR3DP05423 398 aaPredicted RBP12.88□□□□□ -0.35
NEDD8-204ENST00000526430 TNFAIP2Q03169 654 aa12.88□□□□□ -0.35
NEDD8-204ENST00000526430 C8orf34Q49A92 452 aa12.88□□□□□ -0.35
NEDD8-204ENST00000526430 BMP8AQ7Z5Y6 402 aa12.88□□□□□ -0.35
NEDD8-204ENST00000526430 TLK2Q86UE8 772 aa12.88□□□□□ -0.35
NEDD8-204ENST00000526430 RUFY2Q8WXA3 655 aa12.88□□□□□ -0.35
NEDD8-204ENST00000526430 ANKS1AQ92625 1134 aa12.88□□□□□ -0.35
NEDD8-204ENST00000526430 SWAP70Q9UH65 585 aa12.88□□□□□ -0.35
NEDD8-204ENST00000526430 FAM50BQ9Y247 325 aa12.88□□□□□ -0.35
NEDD8-204ENST00000526430 MINDY4BA8MYZ0 360 aa12.87□□□□□ -0.35
NEDD8-204ENST00000526430 ATP2A1O14983 1001 aa12.87□□□□□ -0.35
NEDD8-204ENST00000526430 GFRA3O60609 400 aa12.87□□□□□ -0.35
NEDD8-204ENST00000526430 CDK8P49336 464 aa12.87□□□□□ -0.35
NEDD8-204ENST00000526430 CTDSPL2Q05D32 466 aa12.87□□□□□ -0.35
NEDD8-204ENST00000526430 PPARAQ07869 468 aa12.87□□□□□ -0.35
NEDD8-204ENST00000526430 COL9A3Q14050 684 aaPredicted RBP12.87□□□□□ -0.35
NEDD8-204ENST00000526430 NECTIN1Q15223 517 aa12.87□□□□□ -0.35
NEDD8-204ENST00000526430 PKN1Q16512 942 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms