RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 TRAF1Q13077 416 aa17.64■□□□□ 0.41
LSM1-203ENST00000520755 NPY5RQ15761 445 aa17.64■□□□□ 0.41
LSM1-203ENST00000520755 HEATR3Q7Z4Q2 680 aa17.64■□□□□ 0.41
LSM1-203ENST00000520755 DPP9Q86TI2 863 aa17.64■□□□□ 0.41
LSM1-203ENST00000520755 CLEC4DQ8WXI8 215 aa17.64■□□□□ 0.41
LSM1-203ENST00000520755 A1CFQ9NQ94 594 aaKnown RBP17.64■□□□□ 0.41
LSM1-203ENST00000520755 BARHL2Q9NY43 387 aa17.64■□□□□ 0.41
LSM1-203ENST00000520755 MRPL11Q9Y3B7 192 aaKnown RBP17.64■□□□□ 0.41
LSM1-203ENST00000520755 OPLAHO14841 1288 aa17.63■□□□□ 0.41
LSM1-203ENST00000520755 ADAMTS3O15072 1205 aa17.63■□□□□ 0.41
LSM1-203ENST00000520755 COBLO75128 1261 aa17.63■□□□□ 0.41
LSM1-203ENST00000520755 PKN2Q16513 984 aaKnown RBP17.63■□□□□ 0.41
LSM1-203ENST00000520755 COL13A1Q5TAT6 717 aaPredicted RBP17.63■□□□□ 0.41
LSM1-203ENST00000520755 FBXO46Q6PJ61 603 aaPredicted RBP17.63■□□□□ 0.41
LSM1-203ENST00000520755 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.63■□□□□ 0.41
LSM1-203ENST00000520755 USP6NLQ92738 828 aa17.63■□□□□ 0.41
LSM1-203ENST00000520755 APBA2Q99767 749 aa17.63■□□□□ 0.41
LSM1-203ENST00000520755 MCOLN1Q9GZU1 580 aa17.63■□□□□ 0.41
LSM1-203ENST00000520755 hCG_1984214I3L0E3 225 aa17.62■□□□□ 0.41
LSM1-203ENST00000520755 IRF5Q13568 498 aa17.62■□□□□ 0.41
LSM1-203ENST00000520755 RNF207Q6ZRF8 634 aa17.62■□□□□ 0.41
LSM1-203ENST00000520755 ZNF713Q8N859 430 aaPredicted RBP17.62■□□□□ 0.41
LSM1-203ENST00000520755 FAM184AQ8NB25 1140 aa17.62■□□□□ 0.41
LSM1-203ENST00000520755 NPLOC4Q8TAT6 608 aa17.62■□□□□ 0.41
LSM1-203ENST00000520755 WASF1Q92558 559 aa17.62■□□□□ 0.41
LSM1-203ENST00000520755 CYP39A1Q9NYL5 469 aa17.62■□□□□ 0.41
LSM1-203ENST00000520755 PFASO15067 1338 aa17.62■□□□□ 0.41
LSM1-203ENST00000520755 TCHHQ07283 1943 aa17.62■□□□□ 0.41
LSM1-203ENST00000520755 MCM3APO60318 1980 aa17.61■□□□□ 0.41
LSM1-203ENST00000520755 POTEB2H3BUK9 544 aa17.61■□□□□ 0.41
LSM1-203ENST00000520755 ADCY3O60266 1144 aa17.61■□□□□ 0.41
LSM1-203ENST00000520755 ELNP15502 786 aa17.61■□□□□ 0.41
LSM1-203ENST00000520755 SYT1P21579 422 aa17.61■□□□□ 0.41
LSM1-203ENST00000520755 CALML3P27482 149 aa17.61■□□□□ 0.41
LSM1-203ENST00000520755 GUCY1B3Q02153 619 aa17.61■□□□□ 0.41
LSM1-203ENST00000520755 PKP1Q13835 747 aa17.61■□□□□ 0.41
LSM1-203ENST00000520755 BAATQ14032 418 aaPredicted RBP17.61■□□□□ 0.41
LSM1-203ENST00000520755 CCL14Q16627 93 aa17.61■□□□□ 0.41
LSM1-203ENST00000520755 KRT40Q6A162 431 aa17.61■□□□□ 0.41
LSM1-203ENST00000520755 PPP1R18Q6NYC8 613 aa17.61■□□□□ 0.41
LSM1-203ENST00000520755 SLC30A10Q6XR72 485 aa17.61■□□□□ 0.41
LSM1-203ENST00000520755 MCF2L2Q86YR7 1114 aa17.61■□□□□ 0.41
LSM1-203ENST00000520755 TBC1D5Q92609 795 aa17.61■□□□□ 0.41
LSM1-203ENST00000520755 C8orf76Q96K31 380 aa17.61■□□□□ 0.41
LSM1-203ENST00000520755 PHF20Q9BVI0 1012 aa17.61■□□□□ 0.41
LSM1-203ENST00000520755 SH3GLB2Q9NR46 395 aa17.61■□□□□ 0.41
LSM1-203ENST00000520755 SLC5A4Q9NY91 659 aa17.61■□□□□ 0.41
LSM1-203ENST00000520755 KCNJ14Q9UNX9 436 aa17.61■□□□□ 0.41
LSM1-203ENST00000520755 DNAJC25-GNG10A0A024R161 153 aa17.6■□□□□ 0.41
LSM1-203ENST00000520755 CFBP00751 764 aa17.6■□□□□ 0.41
LSM1-203ENST00000520755 HOXC6P09630 235 aa17.6■□□□□ 0.41
LSM1-203ENST00000520755 XRCC5P13010 732 aaKnown RBP17.6■□□□□ 0.41
LSM1-203ENST00000520755 NAPAP54920 295 aa17.6■□□□□ 0.41
LSM1-203ENST00000520755 RPS6P62753 249 aaKnown RBP17.6■□□□□ 0.41
LSM1-203ENST00000520755 CNTN2Q02246 1040 aa17.6■□□□□ 0.41
LSM1-203ENST00000520755 ZNF792Q3KQV3 632 aa17.6■□□□□ 0.41
LSM1-203ENST00000520755 FBXO18Q8NFZ0 1043 aa17.6■□□□□ 0.41
LSM1-203ENST00000520755 PURBQ96QR8 312 aaKnown RBP17.6■□□□□ 0.41
LSM1-203ENST00000520755 HTTP42858 3142 aa17.6■□□□□ 0.41
LSM1-203ENST00000520755 ESYT2A0FGR8 921 aa17.59■□□□□ 0.41
LSM1-203ENST00000520755 GRK4P32298 578 aa17.59■□□□□ 0.41
LSM1-203ENST00000520755 SLC9C1Q4G0N8 1177 aa17.59■□□□□ 0.41
LSM1-203ENST00000520755 LARP1BQ659C4 914 aaKnown RBP17.59■□□□□ 0.41
LSM1-203ENST00000520755 SLAIN1Q8ND83 568 aa17.59■□□□□ 0.41
LSM1-203ENST00000520755 RGS22Q8NE09 1264 aa17.59■□□□□ 0.41
LSM1-203ENST00000520755 SH3TC2Q8TF17 1288 aa17.59■□□□□ 0.41
LSM1-203ENST00000520755 TRIB2Q92519 343 aa17.59■□□□□ 0.41
LSM1-203ENST00000520755 ZMYND12Q9H0C1 365 aa17.59■□□□□ 0.41
LSM1-203ENST00000520755 FLRT1Q9NZU1 646 aa17.59■□□□□ 0.41
LSM1-203ENST00000520755 BIN2Q9UBW5 565 aaPredicted RBP17.59■□□□□ 0.41
LSM1-203ENST00000520755 KIF3AQ9Y496 699 aa17.59■□□□□ 0.41
LSM1-203ENST00000520755 MMP1P03956 469 aa17.58■□□□□ 0.4
LSM1-203ENST00000520755 HOXA13P31271 388 aaPredicted RBP17.58■□□□□ 0.4
LSM1-203ENST00000520755 FAM177A1Q8N128 213 aaPredicted RBP17.58■□□□□ 0.4
LSM1-203ENST00000520755 FAM133AQ8N9E0 248 aa17.58■□□□□ 0.4
LSM1-203ENST00000520755 CCDC148Q8NFR7 591 aa17.58■□□□□ 0.4
LSM1-203ENST00000520755 PXYLP1Q8TE99 480 aa17.58■□□□□ 0.4
LSM1-203ENST00000520755 MAML3Q96JK9 1138 aa17.58■□□□□ 0.4
LSM1-203ENST00000520755 DAXXQ9UER7 740 aaPredicted RBP17.58■□□□□ 0.4
LSM1-203ENST00000520755 MTMR6Q9Y217 621 aa17.58■□□□□ 0.4
LSM1-203ENST00000520755 CENPFP49454 3210 aa17.58■□□□□ 0.4
LSM1-203ENST00000520755 SOWAHBA6NEL2 793 aa17.57■□□□□ 0.4
LSM1-203ENST00000520755 KIF28PB7ZC32 967 aa17.57■□□□□ 0.4
LSM1-203ENST00000520755 GCOM1H8Y6P7 765 aaPredicted RBP17.57■□□□□ 0.4
LSM1-203ENST00000520755 M0R2N6 131 aa17.57■□□□□ 0.4
LSM1-203ENST00000520755 STX6O43752 255 aa17.57■□□□□ 0.4
LSM1-203ENST00000520755 POLR2MP0CAP2 368 aa17.57■□□□□ 0.4
LSM1-203ENST00000520755 HSD17B4P51659 736 aa17.57■□□□□ 0.4
LSM1-203ENST00000520755 TRMT44Q8IYL2 757 aaKnown RBP17.57■□□□□ 0.4
LSM1-203ENST00000520755 DAGLBQ8NCG7 672 aa17.57■□□□□ 0.4
LSM1-203ENST00000520755 OXER1Q8TDS5 423 aa17.57■□□□□ 0.4
LSM1-203ENST00000520755 SYTL5Q8TDW5 730 aaPredicted RBP17.57■□□□□ 0.4
LSM1-203ENST00000520755 FGD4Q96M96 766 aa17.57■□□□□ 0.4
LSM1-203ENST00000520755 COL20A1Q9P218 1284 aa17.57■□□□□ 0.4
LSM1-203ENST00000520755 DIS3Q9Y2L1 958 aaKnown RBP17.57■□□□□ 0.4
LSM1-203ENST00000520755 ZDHHC9Q9Y397 364 aa17.57■□□□□ 0.4
LSM1-203ENST00000520755 KIAA1217Q5T5P2 1943 aa17.57■□□□□ 0.4
LSM1-203ENST00000520755 VPS37CA5D8V6 355 aaPredicted RBP17.56■□□□□ 0.4
LSM1-203ENST00000520755 SMCO2A6NFE2 343 aa17.56■□□□□ 0.4
LSM1-203ENST00000520755 HMGCRP04035 888 aa17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms