RNA–Protein interactions for RNA: ENST00000518872.1

SYNPO-203, Transcript of synaptopodin, humanhuman

TSL 5

Gene SYNPO, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-203ENST00000518872 DDX49Q9Y6V7 483 aaKnown RBP34.6■■■■□ 3.13
SYNPO-203ENST00000518872 BAZ2BQ9UIF8 2168 aaKnown RBP34.59■■■■□ 3.13
SYNPO-203ENST00000518872 TROAPQ12815 778 aa34.59■■■■□ 3.13
SYNPO-203ENST00000518872 FBXO11Q86XK2 927 aa34.59■■■■□ 3.13
SYNPO-203ENST00000518872 IGDCC4Q8TDY8 1250 aa34.59■■■■□ 3.13
SYNPO-203ENST00000518872 TOX2Q96NM4 488 aa34.59■■■■□ 3.13
SYNPO-203ENST00000518872 PDLIM7Q9NR12 457 aa34.59■■■■□ 3.13
SYNPO-203ENST00000518872 RBM47A0AV96 593 aaKnown RBP34.58■■■■□ 3.13
SYNPO-203ENST00000518872 DHX16O60231 1041 aaKnown RBP34.58■■■■□ 3.13
SYNPO-203ENST00000518872 SMPD1P17405 629 aa34.58■■■■□ 3.13
SYNPO-203ENST00000518872 TLE2Q04725 743 aa34.58■■■■□ 3.13
SYNPO-203ENST00000518872 NECTIN1Q15223 517 aa34.58■■■■□ 3.13
SYNPO-203ENST00000518872 ANKRD33Q7Z3H0 272 aa34.58■■■■□ 3.13
SYNPO-203ENST00000518872 SKAP1Q86WV1 359 aa34.58■■■■□ 3.13
SYNPO-203ENST00000518872 MCF2L2Q86YR7 1114 aa34.58■■■■□ 3.13
SYNPO-203ENST00000518872 TDHQ8IZJ6 230 aa34.58■■■■□ 3.13
SYNPO-203ENST00000518872 GLT1D1Q96MS3 346 aa34.58■■■■□ 3.13
SYNPO-203ENST00000518872 UBE2OQ9C0C9 1292 aaKnown RBP34.58■■■■□ 3.13
SYNPO-203ENST00000518872 PDGFCQ9NRA1 345 aa34.58■■■■□ 3.13
SYNPO-203ENST00000518872 MRPL11Q9Y3B7 192 aaKnown RBP34.58■■■■□ 3.13
SYNPO-203ENST00000518872 ASGR1P07306 291 aa34.57■■■■□ 3.12
SYNPO-203ENST00000518872 IRX5P78411 483 aaPredicted RBP34.57■■■■□ 3.12
SYNPO-203ENST00000518872 GNASQ5JWF2 1037 aa34.57■■■■□ 3.12
SYNPO-203ENST00000518872 EEPD1Q7L9B9 569 aa34.57■■■■□ 3.12
SYNPO-203ENST00000518872 TLK2Q86UE8 772 aa34.57■■■■□ 3.12
SYNPO-203ENST00000518872 LBHD1Q9BQE6 289 aaPredicted RBP34.57■■■■□ 3.12
SYNPO-203ENST00000518872 SENP2Q9HC62 589 aa34.57■■■■□ 3.12
SYNPO-203ENST00000518872 B4DLN1 442 aa34.56■■■■□ 3.12
SYNPO-203ENST00000518872 MRPL12P52815 198 aaKnown RBP34.56■■■■□ 3.12
SYNPO-203ENST00000518872 MDM2Q00987 491 aaPredicted RBP34.56■■■■□ 3.12
SYNPO-203ENST00000518872 GHRHRQ02643 423 aa34.56■■■■□ 3.12
SYNPO-203ENST00000518872 TMEM67Q5HYA8 995 aa34.56■■■■□ 3.12
SYNPO-203ENST00000518872 AMNQ9BXJ7 453 aa34.56■■■■□ 3.12
SYNPO-203ENST00000518872 RIOX1Q9H6W3 641 aa34.56■■■■□ 3.12
SYNPO-203ENST00000518872 VAT1LQ9HCJ6 419 aa34.56■■■■□ 3.12
SYNPO-203ENST00000518872 SLC27A2O14975 620 aa34.55■■■■□ 3.12
SYNPO-203ENST00000518872 ZBTB5O15062 677 aa34.55■■■■□ 3.12
SYNPO-203ENST00000518872 DUSP28Q4G0W2 176 aa34.55■■■■□ 3.12
SYNPO-203ENST00000518872 NOL8Q76FK4 1167 aaKnown RBP34.55■■■■□ 3.12
SYNPO-203ENST00000518872 CHST3Q7LGC8 479 aa34.55■■■■□ 3.12
SYNPO-203ENST00000518872 MAP3K14Q99558 947 aa34.55■■■■□ 3.12
SYNPO-203ENST00000518872 ANO2Q9NQ90 1003 aa34.55■■■■□ 3.12
SYNPO-203ENST00000518872 SZT2Q5T011 3432 aa34.55■■■■□ 3.12
SYNPO-203ENST00000518872 CCDC136Q96JN2 1154 aa34.54■■■■□ 3.12
SYNPO-203ENST00000518872 AP5M1Q9H0R1 490 aa34.54■■■■□ 3.12
SYNPO-203ENST00000518872 MROH7Q68CQ1 1323 aa34.54■■■■□ 3.12
SYNPO-203ENST00000518872 CLTBP09497 229 aa34.53■■■■□ 3.12
SYNPO-203ENST00000518872 CDK7P50613 346 aa34.53■■■■□ 3.12
SYNPO-203ENST00000518872 PDE4DQ08499 809 aa34.53■■■■□ 3.12
SYNPO-203ENST00000518872 LRIT3Q3SXY7 679 aa34.53■■■■□ 3.12
SYNPO-203ENST00000518872 CREB3L3Q68CJ9 461 aa34.53■■■■□ 3.12
SYNPO-203ENST00000518872 CATIPQ7Z7H3 387 aa34.53■■■■□ 3.12
SYNPO-203ENST00000518872 SYTL5Q8TDW5 730 aaPredicted RBP34.53■■■■□ 3.12
SYNPO-203ENST00000518872 CABYRO75952 493 aa34.52■■■■□ 3.12
SYNPO-203ENST00000518872 MCM5P33992 734 aa34.52■■■■□ 3.12
SYNPO-203ENST00000518872 TRAF1Q13077 416 aa34.52■■■■□ 3.12
SYNPO-203ENST00000518872 FSCN1Q16658 493 aaKnown RBP34.52■■■■□ 3.12
SYNPO-203ENST00000518872 SLC35G1Q2M3R5 365 aa34.52■■■■□ 3.12
SYNPO-203ENST00000518872 SAMD3Q8N6K7 520 aa34.52■■■■□ 3.12
SYNPO-203ENST00000518872 TBC1D5Q92609 795 aa34.52■■■■□ 3.12
SYNPO-203ENST00000518872 TMEM87BQ96K49 555 aa34.52■■■■□ 3.12
SYNPO-203ENST00000518872 LY9Q9HBG7 655 aa34.52■■■■□ 3.12
SYNPO-203ENST00000518872 PRDM5Q9NQX1 630 aaPredicted RBP34.52■■■■□ 3.12
SYNPO-203ENST00000518872 MAP3K20Q9NYL2 800 aaKnown RBP34.52■■■■□ 3.12
SYNPO-203ENST00000518872 A0A0U1RQG5 324 aaPredicted RBP34.51■■■■□ 3.12
SYNPO-203ENST00000518872 TRIM43BA6NCK2 446 aa34.51■■■■□ 3.12
SYNPO-203ENST00000518872 KIAA0355O15063 1070 aa34.51■■■■□ 3.12
SYNPO-203ENST00000518872 CASC1Q6TDU7 716 aa34.51■■■■□ 3.12
SYNPO-203ENST00000518872 SH3RF1Q7Z6J0 888 aa34.51■■■■□ 3.12
SYNPO-203ENST00000518872 TMTC2Q8N394 836 aa34.51■■■■□ 3.12
SYNPO-203ENST00000518872 TRIM43Q96BQ3 446 aaPredicted RBP34.51■■■■□ 3.12
SYNPO-203ENST00000518872 WDR11Q9BZH6 1224 aa34.51■■■■□ 3.12
SYNPO-203ENST00000518872 PCDH10Q9P2E7 1040 aa34.51■■■■□ 3.12
SYNPO-203ENST00000518872 KIAA1217Q5T5P2 1943 aa34.51■■■■□ 3.11
SYNPO-203ENST00000518872 DYNC1LI2O43237 492 aaPredicted RBP34.5■■■■□ 3.11
SYNPO-203ENST00000518872 ZEB2O60315 1214 aa34.5■■■■□ 3.11
SYNPO-203ENST00000518872 PQBP1O60828 265 aaKnown RBP34.5■■■■□ 3.11
SYNPO-203ENST00000518872 PPP1R11O60927 126 aaPredicted RBP34.5■■■■□ 3.11
SYNPO-203ENST00000518872 CDC45O75419 566 aa34.5■■■■□ 3.11
SYNPO-203ENST00000518872 DDAH1O94760 285 aa34.5■■■■□ 3.11
SYNPO-203ENST00000518872 BEX3Q00994 111 aa34.5■■■■□ 3.11
SYNPO-203ENST00000518872 NSUN6Q8TEA1 469 aaKnown RBP34.5■■■■□ 3.11
SYNPO-203ENST00000518872 DCDC2CA8MYV0 355 aa34.49■■■■□ 3.11
SYNPO-203ENST00000518872 OPLAHO14841 1288 aa34.49■■■■□ 3.11
SYNPO-203ENST00000518872 NKRFO15226 690 aaKnown RBP eCLIP34.49■■■■□ 3.11
SYNPO-203ENST00000518872 PRC1O43663 620 aa34.49■■■■□ 3.11
SYNPO-203ENST00000518872 CYTH3O43739 400 aa34.49■■■■□ 3.11
SYNPO-203ENST00000518872 HSD17B4P51659 736 aa34.49■■■■□ 3.11
SYNPO-203ENST00000518872 FAAP100Q0VG06 881 aa34.49■■■■□ 3.11
SYNPO-203ENST00000518872 TMEM63BQ5T3F8 832 aa34.49■■■■□ 3.11
SYNPO-203ENST00000518872 SCFD2Q8WU76 684 aa34.49■■■■□ 3.11
SYNPO-203ENST00000518872 IWS1Q96ST2 819 aa34.49■■■■□ 3.11
SYNPO-203ENST00000518872 SEZ6LQ9BYH1 1024 aa34.49■■■■□ 3.11
SYNPO-203ENST00000518872 COL20A1Q9P218 1284 aa34.49■■■■□ 3.11
SYNPO-203ENST00000518872 ARVCFO00192 962 aa34.48■■■■□ 3.11
SYNPO-203ENST00000518872 SOX1O00570 391 aaPredicted RBP34.48■■■■□ 3.11
SYNPO-203ENST00000518872 LIFRP42702 1097 aa34.48■■■■□ 3.11
SYNPO-203ENST00000518872 RNF20Q5VTR2 975 aa34.48■■■■□ 3.11
SYNPO-203ENST00000518872 ZNF654Q8IZM8 581 aa34.48■■■■□ 3.11
SYNPO-203ENST00000518872 SH2B2O14492 632 aaPredicted RBP34.47■■■■□ 3.11
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms