RNA–Protein interactions for RNA: ENST00000513769.5

TPM3-221, Transcript of tropomyosin 3, humanhuman

TSL 3

Gene TPM3, Length 539 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-221ENST00000513769 CAVIN2O95810 425 aa11.28□□□□□ -0.6
TPM3-221ENST00000513769 NDUFB10O96000 172 aa11.28□□□□□ -0.6
TPM3-221ENST00000513769 EGFRP00533 1210 aa11.28□□□□□ -0.6
TPM3-221ENST00000513769 HIRAP54198 1017 aaPredicted RBP11.28□□□□□ -0.6
TPM3-221ENST00000513769 NAPAP54920 295 aa11.28□□□□□ -0.6
TPM3-221ENST00000513769 COPS2P61201 443 aa11.28□□□□□ -0.6
TPM3-221ENST00000513769 SLC35G1Q2M3R5 365 aa11.28□□□□□ -0.6
TPM3-221ENST00000513769 ZSCAN23Q3MJ62 389 aa11.28□□□□□ -0.6
TPM3-221ENST00000513769 WWC2Q6AWC2 1192 aa11.28□□□□□ -0.6
TPM3-221ENST00000513769 CCAR1Q8IX12 1150 aaKnown RBP11.28□□□□□ -0.6
TPM3-221ENST00000513769 KRI1Q8N9T8 703 aaKnown RBP11.28□□□□□ -0.6
TPM3-221ENST00000513769 CHAMP1Q96JM3 812 aa11.28□□□□□ -0.6
TPM3-221ENST00000513769 PYM1Q9BRP8 204 aaKnown RBP11.28□□□□□ -0.6
TPM3-221ENST00000513769 AMNQ9BXJ7 453 aa11.28□□□□□ -0.6
TPM3-221ENST00000513769 TMEM134Q9H6X4 195 aa11.28□□□□□ -0.6
TPM3-221ENST00000513769 GPCPD1Q9NPB8 672 aa11.28□□□□□ -0.6
TPM3-221ENST00000513769 RIC8AQ9NPQ8 531 aa11.28□□□□□ -0.6
TPM3-221ENST00000513769 MAP3K20Q9NYL2 800 aaKnown RBP11.28□□□□□ -0.6
TPM3-221ENST00000513769 PCDHA6Q9UN73 950 aa11.28□□□□□ -0.6
TPM3-221ENST00000513769 PCDHA8Q9Y5H6 950 aa11.28□□□□□ -0.6
TPM3-221ENST00000513769 SHTN1A0MZ66 631 aa11.27□□□□□ -0.61
TPM3-221ENST00000513769 RCCD1A6NED2 376 aa11.27□□□□□ -0.61
TPM3-221ENST00000513769 GOLGA6L3A6NEY3 463 aa11.27□□□□□ -0.61
TPM3-221ENST00000513769 FAM196BA6NMK8 535 aa11.27□□□□□ -0.61
TPM3-221ENST00000513769 USP17L10C9JJH3 530 aa11.27□□□□□ -0.61
TPM3-221ENST00000513769 TMEM232C9JQI7 657 aa11.27□□□□□ -0.61
TPM3-221ENST00000513769 PPP1R12BO60237 982 aaPredicted RBP11.27□□□□□ -0.61
TPM3-221ENST00000513769 FOSP01100 380 aaPredicted RBP11.27□□□□□ -0.61
TPM3-221ENST00000513769 MRE11P49959 708 aa11.27□□□□□ -0.61
TPM3-221ENST00000513769 USP11P51784 963 aa11.27□□□□□ -0.61
TPM3-221ENST00000513769 STAT2P52630 851 aa11.27□□□□□ -0.61
TPM3-221ENST00000513769 JAG1P78504 1218 aa11.27□□□□□ -0.61
TPM3-221ENST00000513769 CEBPZQ03701 1054 aaKnown RBP11.27□□□□□ -0.61
TPM3-221ENST00000513769 FAM160A1Q05DH4 1040 aa11.27□□□□□ -0.61
TPM3-221ENST00000513769 NR5A1Q13285 461 aa11.27□□□□□ -0.61
TPM3-221ENST00000513769 CCDC96Q2M329 555 aa11.27□□□□□ -0.61
TPM3-221ENST00000513769 NOL9Q5SY16 702 aaKnown RBP11.27□□□□□ -0.61
TPM3-221ENST00000513769 AXDND1Q5T1B0 1012 aaPredicted RBP11.27□□□□□ -0.61
TPM3-221ENST00000513769 NBPF12Q5TAG4 269 aaPredicted RBP11.27□□□□□ -0.61
TPM3-221ENST00000513769 LRSAM1Q6UWE0 723 aa11.27□□□□□ -0.61
TPM3-221ENST00000513769 CCDC73Q6ZRK6 1079 aa11.27□□□□□ -0.61
TPM3-221ENST00000513769 HEATR3Q7Z4Q2 680 aa11.27□□□□□ -0.61
TPM3-221ENST00000513769 SCYL3Q8IZE3 742 aa11.27□□□□□ -0.61
TPM3-221ENST00000513769 PRPF38AQ8NAV1 312 aaKnown RBP11.27□□□□□ -0.61
TPM3-221ENST00000513769 ENGASEQ8NFI3 743 aa11.27□□□□□ -0.61
TPM3-221ENST00000513769 CCDC34Q96HJ3 373 aa11.27□□□□□ -0.61
TPM3-221ENST00000513769 TMEM63CQ9P1W3 806 aa11.27□□□□□ -0.61
TPM3-221ENST00000513769 SIPA1L1O43166 1804 aa11.27□□□□□ -0.61
TPM3-221ENST00000513769 MYH6P13533 1939 aa11.27□□□□□ -0.61
TPM3-221ENST00000513769 ADAMTSL1Q8N6G6 1762 aa11.26□□□□□ -0.61
TPM3-221ENST00000513769 hCG_1642624A0A1W2PR95 340 aa11.26□□□□□ -0.61
TPM3-221ENST00000513769 FSD2A1L4K1 749 aa11.26□□□□□ -0.61
TPM3-221ENST00000513769 WDR46O15213 610 aaKnown RBP11.26□□□□□ -0.61
TPM3-221ENST00000513769 SNW1Q13573 536 aaKnown RBP11.26□□□□□ -0.61
TPM3-221ENST00000513769 SYDE2Q5VT97 1194 aa11.26□□□□□ -0.61
TPM3-221ENST00000513769 SMYD5Q6GMV2 418 aa11.26□□□□□ -0.61
TPM3-221ENST00000513769 TTBK2Q6IQ55 1244 aa11.26□□□□□ -0.61
TPM3-221ENST00000513769 KANK3Q6NY19 840 aa11.26□□□□□ -0.61
TPM3-221ENST00000513769 RBM43Q6ZSC3 357 aaKnown RBP11.26□□□□□ -0.61
TPM3-221ENST00000513769 KCTD1Q719H9 257 aa11.26□□□□□ -0.61
TPM3-221ENST00000513769 SULF1Q8IWU6 871 aa11.26□□□□□ -0.61
TPM3-221ENST00000513769 MRPS27Q92552 414 aaKnown RBP11.26□□□□□ -0.61
TPM3-221ENST00000513769 CUL5Q93034 780 aa11.26□□□□□ -0.61
TPM3-221ENST00000513769 SHISA4Q96DD7 197 aa11.26□□□□□ -0.61
TPM3-221ENST00000513769 GZF1Q9H116 711 aaPredicted RBP11.26□□□□□ -0.61
TPM3-221ENST00000513769 PSTPIP2Q9H939 334 aa11.26□□□□□ -0.61
TPM3-221ENST00000513769 PICK1Q9NRD5 415 aa11.26□□□□□ -0.61
TPM3-221ENST00000513769 FAM13BQ9NYF5 915 aa11.26□□□□□ -0.61
TPM3-221ENST00000513769 USP25Q9UHP3 1055 aa11.26□□□□□ -0.61
TPM3-221ENST00000513769 HOOK1Q9UJC3 728 aaKnown RBP11.26□□□□□ -0.61
TPM3-221ENST00000513769 MTMR7Q9Y216 660 aa11.26□□□□□ -0.61
TPM3-221ENST00000513769 PCDHA1Q9Y5I3 950 aa11.26□□□□□ -0.61
TPM3-221ENST00000513769 FRMPD2Q68DX3 1309 aaPredicted RBP11.26□□□□□ -0.61
TPM3-221ENST00000513769 POTECB2RU33 542 aa11.25□□□□□ -0.61
TPM3-221ENST00000513769 PIK3CDO00329 1044 aa11.25□□□□□ -0.61
TPM3-221ENST00000513769 SLURP2P0DP57 97 aa11.25□□□□□ -0.61
TPM3-221ENST00000513769 NF2P35240 595 aa11.25□□□□□ -0.61
TPM3-221ENST00000513769 PRPHP41219 470 aa11.25□□□□□ -0.61
TPM3-221ENST00000513769 CLK2P49760 499 aaKnown RBP11.25□□□□□ -0.61
TPM3-221ENST00000513769 BACE1P56817 501 aa11.25□□□□□ -0.61
TPM3-221ENST00000513769 NONOQ15233 471 aaKnown RBP eCLIP11.25□□□□□ -0.61
TPM3-221ENST00000513769 TTC38Q5R3I4 469 aa11.25□□□□□ -0.61
TPM3-221ENST00000513769 PPP4R3AQ6IN85 833 aa11.25□□□□□ -0.61
TPM3-221ENST00000513769 PIK3AP1Q6ZUJ8 805 aa11.25□□□□□ -0.61
TPM3-221ENST00000513769 FBXO11Q86XK2 927 aa11.25□□□□□ -0.61
TPM3-221ENST00000513769 FMR1NBQ8N0W7 255 aaPredicted RBP11.25□□□□□ -0.61
TPM3-221ENST00000513769 REXO1Q8N1G1 1221 aaKnown RBP11.25□□□□□ -0.61
TPM3-221ENST00000513769 ZNF280CQ8ND82 737 aa11.25□□□□□ -0.61
TPM3-221ENST00000513769 PRR14Q9BWN1 585 aa11.25□□□□□ -0.61
TPM3-221ENST00000513769 DACT1Q9NYF0 836 aa11.25□□□□□ -0.61
TPM3-221ENST00000513769 PCDHB6Q9Y5E3 794 aa11.25□□□□□ -0.61
TPM3-221ENST00000513769 MYH4Q9Y623 1939 aa11.25□□□□□ -0.61
TPM3-221ENST00000513769 KINO60870 393 aaKnown RBP11.24□□□□□ -0.61
TPM3-221ENST00000513769 USP2O75604 605 aaPredicted RBP11.24□□□□□ -0.61
TPM3-221ENST00000513769 ZNF202O95125 648 aa11.24□□□□□ -0.61
TPM3-221ENST00000513769 PTPRAP18433 802 aa11.24□□□□□ -0.61
TPM3-221ENST00000513769 EPHX2P34913 555 aa11.24□□□□□ -0.61
TPM3-221ENST00000513769 LONP1P36776 959 aaKnown RBP11.24□□□□□ -0.61
TPM3-221ENST00000513769 ECE1P42892 770 aa11.24□□□□□ -0.61
TPM3-221ENST00000513769 ADCY7P51828 1080 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms