RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 PCDH11YQ9BZA8 1340 aa10.75□□□□□ -0.69
SYNE1-230ENST00000495090 GRID2IPA4D2P6 1211 aa10.75□□□□□ -0.69
SYNE1-230ENST00000495090 ZNF233A6NK53 670 aa10.75□□□□□ -0.69
SYNE1-230ENST00000495090 PES1O00541 588 aaKnown RBP10.75□□□□□ -0.69
SYNE1-230ENST00000495090 CCNE1P24864 410 aa10.75□□□□□ -0.69
SYNE1-230ENST00000495090 CYP27A1Q02318 531 aa10.75□□□□□ -0.69
SYNE1-230ENST00000495090 CFAP221Q4G0U5 840 aa10.75□□□□□ -0.69
SYNE1-230ENST00000495090 CCDC40Q4G0X9 1142 aa10.75□□□□□ -0.69
SYNE1-230ENST00000495090 FKBP15Q5T1M5 1219 aa10.75□□□□□ -0.69
SYNE1-230ENST00000495090 LRIG3Q6UXM1 1119 aa10.75□□□□□ -0.69
SYNE1-230ENST00000495090 NLRP14Q86W24 1093 aa10.75□□□□□ -0.69
SYNE1-230ENST00000495090 CSGALNACT2Q8N6G5 542 aa10.75□□□□□ -0.69
SYNE1-230ENST00000495090 C4orf32Q8N8J7 132 aa10.75□□□□□ -0.69
SYNE1-230ENST00000495090 GIMAP7Q8NHV1 300 aa10.75□□□□□ -0.69
SYNE1-230ENST00000495090 CCT8L2Q96SF2 557 aa10.75□□□□□ -0.69
SYNE1-230ENST00000495090 ZSCAN10Q96SZ4 725 aaPredicted RBP10.75□□□□□ -0.69
SYNE1-230ENST00000495090 JPH2Q9BR39 696 aaPredicted RBP10.75□□□□□ -0.69
SYNE1-230ENST00000495090 CCSER1Q9C0I3 900 aa10.75□□□□□ -0.69
SYNE1-230ENST00000495090 GREM2Q9H772 168 aa10.75□□□□□ -0.69
SYNE1-230ENST00000495090 KBTBD4Q9NVX7 518 aa10.75□□□□□ -0.69
SYNE1-230ENST00000495090 SUFUQ9UMX1 484 aa10.75□□□□□ -0.69
SYNE1-230ENST00000495090 V9GY48 417 aaPredicted RBP10.75□□□□□ -0.69
SYNE1-230ENST00000495090 DUOX1Q9NRD9 1551 aa10.75□□□□□ -0.69
SYNE1-230ENST00000495090 GOLGA6L7A0A1B0GV03 622 aa10.74□□□□□ -0.69
SYNE1-230ENST00000495090 PRDM1O75626 825 aa10.74□□□□□ -0.69
SYNE1-230ENST00000495090 KRT14P02533 472 aa10.74□□□□□ -0.69
SYNE1-230ENST00000495090 CSB-PGBD3P0DP91 1061 aa10.74□□□□□ -0.69
SYNE1-230ENST00000495090 KIF11P52732 1056 aa10.74□□□□□ -0.69
SYNE1-230ENST00000495090 SLC7A5Q01650 507 aa10.74□□□□□ -0.69
SYNE1-230ENST00000495090 TROAPQ12815 778 aa10.74□□□□□ -0.69
SYNE1-230ENST00000495090 NKX1-1Q15270 411 aaPredicted RBP10.74□□□□□ -0.69
SYNE1-230ENST00000495090 NAALADL2Q58DX5 795 aa10.74□□□□□ -0.69
SYNE1-230ENST00000495090 MIIPQ5JXC2 388 aa10.74□□□□□ -0.69
SYNE1-230ENST00000495090 TTC19Q6DKK2 380 aaPredicted RBP10.74□□□□□ -0.69
SYNE1-230ENST00000495090 KIF6Q6ZMV9 814 aa10.74□□□□□ -0.69
SYNE1-230ENST00000495090 ARMC9Q7Z3E5 817 aa10.74□□□□□ -0.69
SYNE1-230ENST00000495090 CCDC13Q8IYE1 715 aa10.74□□□□□ -0.69
SYNE1-230ENST00000495090 LCORLQ8N3X6 602 aa10.74□□□□□ -0.69
SYNE1-230ENST00000495090 ENAHQ8N8S7 591 aaPredicted RBP10.74□□□□□ -0.69
SYNE1-230ENST00000495090 P3H4Q92791 437 aa10.74□□□□□ -0.69
SYNE1-230ENST00000495090 P2RX5Q93086 422 aa10.74□□□□□ -0.69
SYNE1-230ENST00000495090 CCDC47Q96A33 483 aaKnown RBP10.74□□□□□ -0.69
SYNE1-230ENST00000495090 CNOT6LQ96LI5 555 aaKnown RBP10.74□□□□□ -0.69
SYNE1-230ENST00000495090 CCDC43Q96MW1 224 aaKnown RBP10.74□□□□□ -0.69
SYNE1-230ENST00000495090 MAPK8IP1Q9UQF2 711 aa10.74□□□□□ -0.69
SYNE1-230ENST00000495090 PRKAB2O43741 272 aa10.74□□□□□ -0.69
SYNE1-230ENST00000495090 MOCS3O95396 460 aa10.74□□□□□ -0.69
SYNE1-230ENST00000495090 SLC5A1P13866 664 aa10.74□□□□□ -0.69
SYNE1-230ENST00000495090 CALML3P27482 149 aa10.74□□□□□ -0.69
SYNE1-230ENST00000495090 ELF1P32519 619 aa10.74□□□□□ -0.69
SYNE1-230ENST00000495090 ITGB3BPQ13352 177 aaPredicted RBP10.74□□□□□ -0.69
SYNE1-230ENST00000495090 RASGRF1Q13972 1273 aa10.74□□□□□ -0.69
SYNE1-230ENST00000495090 IFIT1BQ5T764 474 aaKnown RBP10.74□□□□□ -0.69
SYNE1-230ENST00000495090 NFRKBQ6P4R8 1299 aa10.74□□□□□ -0.69
SYNE1-230ENST00000495090 SH2D3CQ8N5H7 860 aa10.74□□□□□ -0.69
SYNE1-230ENST00000495090 PIK3R5Q8WYR1 880 aa10.74□□□□□ -0.69
SYNE1-230ENST00000495090 ZNF622Q969S3 477 aaKnown RBP eCLIP10.74□□□□□ -0.69
SYNE1-230ENST00000495090 CCDC85AQ96PX6 553 aaPredicted RBP10.74□□□□□ -0.69
SYNE1-230ENST00000495090 EDEM3Q9BZQ6 932 aa10.74□□□□□ -0.69
SYNE1-230ENST00000495090 RABEP2Q9H5N1 569 aa10.74□□□□□ -0.69
SYNE1-230ENST00000495090 RBM12Q9NTZ6 932 aaKnown RBP10.74□□□□□ -0.69
SYNE1-230ENST00000495090 ARHGAP20Q9P2F6 1191 aa10.74□□□□□ -0.69
SYNE1-230ENST00000495090 SSU72P8A0A1W2PR75 194 aa10.73□□□□□ -0.69
SYNE1-230ENST00000495090 RBAK-RBAKDNI3L0D1 243 aa10.73□□□□□ -0.69
SYNE1-230ENST00000495090 LAD1O00515 517 aa10.73□□□□□ -0.69
SYNE1-230ENST00000495090 PLEKHA8P1O95397 391 aa10.73□□□□□ -0.69
SYNE1-230ENST00000495090 FGRP09769 529 aa10.73□□□□□ -0.69
SYNE1-230ENST00000495090 HOXA7P31268 230 aaPredicted RBP10.73□□□□□ -0.69
SYNE1-230ENST00000495090 MCM7P33993 719 aa10.73□□□□□ -0.69
SYNE1-230ENST00000495090 HSPA9P38646 679 aaKnown RBP10.73□□□□□ -0.69
SYNE1-230ENST00000495090 ATP1A2P50993 1020 aa10.73□□□□□ -0.69
SYNE1-230ENST00000495090 CDR1P51861 262 aa10.73□□□□□ -0.69
SYNE1-230ENST00000495090 MRPL12P52815 198 aaKnown RBP10.73□□□□□ -0.69
SYNE1-230ENST00000495090 GUCY1A3Q02108 690 aa10.73□□□□□ -0.69
SYNE1-230ENST00000495090 IFFO1Q0D2I5 559 aa10.73□□□□□ -0.69
SYNE1-230ENST00000495090 GIGYF2Q6Y7W6 1299 aaKnown RBP10.73□□□□□ -0.69
SYNE1-230ENST00000495090 PIK3AP1Q6ZUJ8 805 aa10.73□□□□□ -0.69
SYNE1-230ENST00000495090 NOX5Q96PH1 765 aa10.73□□□□□ -0.69
SYNE1-230ENST00000495090 NOC4LQ9BVI4 516 aaKnown RBP10.73□□□□□ -0.69
SYNE1-230ENST00000495090 TLR10Q9BXR5 811 aa10.73□□□□□ -0.69
SYNE1-230ENST00000495090 MLXIPQ9HAP2 919 aa10.73□□□□□ -0.69
SYNE1-230ENST00000495090 SIK3Q9Y2K2 1263 aa10.73□□□□□ -0.69
SYNE1-230ENST00000495090 C1orf167Q5SNV9 1468 aa10.72□□□□□ -0.69
SYNE1-230ENST00000495090 CES2O00748 559 aa10.72□□□□□ -0.69
SYNE1-230ENST00000495090 GLI1P08151 1106 aa10.72□□□□□ -0.69
SYNE1-230ENST00000495090 SCG2P13521 617 aa10.72□□□□□ -0.69
SYNE1-230ENST00000495090 MTIF2P46199 727 aaKnown RBP10.72□□□□□ -0.69
SYNE1-230ENST00000495090 KLK7P49862 253 aa10.72□□□□□ -0.69
SYNE1-230ENST00000495090 NLRP5P59047 1200 aa10.72□□□□□ -0.69
SYNE1-230ENST00000495090 PFKFB3Q16875 520 aaPredicted RBP10.72□□□□□ -0.69
SYNE1-230ENST00000495090 CEP85LQ5SZL2 805 aa10.72□□□□□ -0.69
SYNE1-230ENST00000495090 KLHDC7AQ5VTJ3 777 aa10.72□□□□□ -0.69
SYNE1-230ENST00000495090 KRT26Q7Z3Y9 468 aa10.72□□□□□ -0.69
SYNE1-230ENST00000495090 CCDC84Q86UT8 332 aaPredicted RBP10.72□□□□□ -0.69
SYNE1-230ENST00000495090 IQCA1Q86XH1 822 aa10.72□□□□□ -0.69
SYNE1-230ENST00000495090 SMCR8Q8TEV9 937 aaPredicted RBP10.72□□□□□ -0.69
SYNE1-230ENST00000495090 SLC40A1Q9NP59 571 aa10.72□□□□□ -0.69
SYNE1-230ENST00000495090 PLCB1Q9NQ66 1216 aa10.72□□□□□ -0.69
SYNE1-230ENST00000495090 SH3GLB2Q9NR46 395 aa10.72□□□□□ -0.69
SYNE1-230ENST00000495090 ANKRD36CQ5JPF3 1778 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms