RNA–Protein interactions for RNA: ENST00000493815.5

PDLIM7-208, Transcript of PDZ and LIM domain 7, humanhuman

TSL 1 (best)

Gene PDLIM7, Length 1,686 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM7-208ENST00000493815 VPS54Q9P1Q0 977 aa20.61■□□□□ 0.89
PDLIM7-208ENST00000493815 ORC3Q9UBD5 711 aaPredicted RBP20.61■□□□□ 0.89
PDLIM7-208ENST00000493815 PFASO15067 1338 aa20.6■□□□□ 0.89
PDLIM7-208ENST00000493815 DEXIO95424 95 aa20.6■□□□□ 0.89
PDLIM7-208ENST00000493815 PRMT2P55345 433 aa20.6■□□□□ 0.89
PDLIM7-208ENST00000493815 MCF2L2Q86YR7 1114 aa20.6■□□□□ 0.89
PDLIM7-208ENST00000493815 SH3TC2Q8TF17 1288 aa20.6■□□□□ 0.89
PDLIM7-208ENST00000493815 TRIB2Q92519 343 aa20.6■□□□□ 0.89
PDLIM7-208ENST00000493815 FGD4Q96M96 766 aa20.6■□□□□ 0.89
PDLIM7-208ENST00000493815 COL20A1Q9P218 1284 aa20.6■□□□□ 0.89
PDLIM7-208ENST00000493815 RBM27Q9P2N5 1060 aaKnown RBP20.6■□□□□ 0.89
PDLIM7-208ENST00000493815 SOWAHBA6NEL2 793 aa20.59■□□□□ 0.89
PDLIM7-208ENST00000493815 HOXC6P09630 235 aa20.59■□□□□ 0.89
PDLIM7-208ENST00000493815 IRF5Q13568 498 aa20.59■□□□□ 0.89
PDLIM7-208ENST00000493815 FBXO46Q6PJ61 603 aaPredicted RBP20.59■□□□□ 0.89
PDLIM7-208ENST00000493815 USP17L6PQ6QN14 398 aa20.59■□□□□ 0.89
PDLIM7-208ENST00000493815 FAM133AQ8N9E0 248 aa20.59■□□□□ 0.89
PDLIM7-208ENST00000493815 MAML3Q96JK9 1138 aa20.59■□□□□ 0.89
PDLIM7-208ENST00000493815 PSTPIP2Q9H939 334 aa20.59■□□□□ 0.89
PDLIM7-208ENST00000493815 GJB4Q9NTQ9 266 aa20.59■□□□□ 0.89
PDLIM7-208ENST00000493815 ASTN1O14525 1302 aa20.59■□□□□ 0.89
PDLIM7-208ENST00000493815 ADAMTS3O15072 1205 aa20.58■□□□□ 0.89
PDLIM7-208ENST00000493815 XRCC5P13010 732 aaKnown RBP20.58■□□□□ 0.89
PDLIM7-208ENST00000493815 FOSBP53539 338 aa20.58■□□□□ 0.89
PDLIM7-208ENST00000493815 TRIM32Q13049 653 aa20.58■□□□□ 0.89
PDLIM7-208ENST00000493815 UBE2SQ16763 222 aa20.58■□□□□ 0.89
PDLIM7-208ENST00000493815 RGS22Q8NE09 1264 aa20.58■□□□□ 0.89
PDLIM7-208ENST00000493815 SYTL5Q8TDW5 730 aaPredicted RBP20.58■□□□□ 0.89
PDLIM7-208ENST00000493815 ZNFX1Q9P2E3 1918 aaKnown RBP20.58■□□□□ 0.89
PDLIM7-208ENST00000493815 GCOM1H8Y6P7 765 aaPredicted RBP20.58■□□□□ 0.88
PDLIM7-208ENST00000493815 POLR2MP0CAP2 368 aa20.58■□□□□ 0.88
PDLIM7-208ENST00000493815 GRK4P32298 578 aa20.58■□□□□ 0.88
PDLIM7-208ENST00000493815 HSD17B4P51659 736 aa20.58■□□□□ 0.88
PDLIM7-208ENST00000493815 PKN2Q16513 984 aaKnown RBP20.58■□□□□ 0.88
PDLIM7-208ENST00000493815 FCHSD1Q86WN1 690 aa20.58■□□□□ 0.88
PDLIM7-208ENST00000493815 TAAR1Q96RJ0 339 aa20.58■□□□□ 0.88
PDLIM7-208ENST00000493815 STK36Q9NRP7 1315 aa20.58■□□□□ 0.88
PDLIM7-208ENST00000493815 SLC5A4Q9NY91 659 aa20.58■□□□□ 0.88
PDLIM7-208ENST00000493815 BRCA2P51587 3418 aa20.57■□□□□ 0.88
PDLIM7-208ENST00000493815 ZNF236Q9UL36 1845 aa20.57■□□□□ 0.88
PDLIM7-208ENST00000493815 SMCO2A6NFE2 343 aa20.57■□□□□ 0.88
PDLIM7-208ENST00000493815 MYCP01106 439 aaPredicted RBP20.57■□□□□ 0.88
PDLIM7-208ENST00000493815 CYP2C19P33261 490 aa20.57■□□□□ 0.88
PDLIM7-208ENST00000493815 hCG_1984214I3L0E3 225 aa20.56■□□□□ 0.88
PDLIM7-208ENST00000493815 MEIS2O14770 477 aa20.56■□□□□ 0.88
PDLIM7-208ENST00000493815 SLC9C1Q4G0N8 1177 aa20.56■□□□□ 0.88
PDLIM7-208ENST00000493815 ZNF713Q8N859 430 aaPredicted RBP20.56■□□□□ 0.88
PDLIM7-208ENST00000493815 SMARCC2Q8TAQ2 1214 aa20.56■□□□□ 0.88
PDLIM7-208ENST00000493815 LLPHQ9BRT6 129 aaKnown RBP20.56■□□□□ 0.88
PDLIM7-208ENST00000493815 ALG1Q9BT22 464 aa20.56■□□□□ 0.88
PDLIM7-208ENST00000493815 BIN2Q9UBW5 565 aaPredicted RBP20.56■□□□□ 0.88
PDLIM7-208ENST00000493815 ADCY7P51828 1080 aa20.55■□□□□ 0.88
PDLIM7-208ENST00000493815 PPP1R18Q6NYC8 613 aa20.55■□□□□ 0.88
PDLIM7-208ENST00000493815 SLAIN1Q8ND83 568 aa20.55■□□□□ 0.88
PDLIM7-208ENST00000493815 PXYLP1Q8TE99 480 aa20.55■□□□□ 0.88
PDLIM7-208ENST00000493815 SNX21Q969T3 373 aa20.55■□□□□ 0.88
PDLIM7-208ENST00000493815 KCNJ14Q9UNX9 436 aa20.55■□□□□ 0.88
PDLIM7-208ENST00000493815 DIS3Q9Y2L1 958 aaKnown RBP20.55■□□□□ 0.88
PDLIM7-208ENST00000493815 K7ELQ4 463 aaPredicted RBP20.54■□□□□ 0.88
PDLIM7-208ENST00000493815 GHRHRQ02643 423 aa20.54■□□□□ 0.88
PDLIM7-208ENST00000493815 CUL5Q93034 780 aa20.54■□□□□ 0.88
PDLIM7-208ENST00000493815 RIC8AQ9NPQ8 531 aa20.54■□□□□ 0.88
PDLIM7-208ENST00000493815 LCTP09848 1927 aa20.54■□□□□ 0.88
PDLIM7-208ENST00000493815 INHAP05111 366 aa20.54■□□□□ 0.88
PDLIM7-208ENST00000493815 ALDH5A1P51649 535 aaPredicted RBP20.54■□□□□ 0.88
PDLIM7-208ENST00000493815 NLRP5P59047 1200 aa20.54■□□□□ 0.88
PDLIM7-208ENST00000493815 UBXN2AP68543 259 aa20.54■□□□□ 0.88
PDLIM7-208ENST00000493815 PRAMEF19Q5SWL8 479 aa20.54■□□□□ 0.88
PDLIM7-208ENST00000493815 HSCBQ8IWL3 235 aa20.54■□□□□ 0.88
PDLIM7-208ENST00000493815 RMDN3Q96TC7 470 aa20.54■□□□□ 0.88
PDLIM7-208ENST00000493815 TINF2Q9BSI4 451 aa20.54■□□□□ 0.88
PDLIM7-208ENST00000493815 ZMYND12Q9H0C1 365 aa20.54■□□□□ 0.88
PDLIM7-208ENST00000493815 FOXD4L1Q9NU39 408 aa20.54■□□□□ 0.88
PDLIM7-208ENST00000493815 TMEM260Q9NX78 707 aa20.54■□□□□ 0.88
PDLIM7-208ENST00000493815 PIK3CDO00329 1044 aa20.53■□□□□ 0.88
PDLIM7-208ENST00000493815 EIF2AK2P19525 551 aaKnown RBP20.53■□□□□ 0.88
PDLIM7-208ENST00000493815 MRPL12P52815 198 aaKnown RBP20.53■□□□□ 0.88
PDLIM7-208ENST00000493815 OLFML2BQ68BL8 750 aa20.53■□□□□ 0.88
PDLIM7-208ENST00000493815 CCDC12Q8WUD4 166 aaPredicted RBP20.53■□□□□ 0.88
PDLIM7-208ENST00000493815 PGBD1Q96JS3 809 aa20.53■□□□□ 0.88
PDLIM7-208ENST00000493815 SH3GLB2Q9NR46 395 aa20.53■□□□□ 0.88
PDLIM7-208ENST00000493815 PLXNA1Q9UIW2 1896 aa20.53■□□□□ 0.88
PDLIM7-208ENST00000493815 RBBP6Q7Z6E9 1792 aaKnown RBP20.53■□□□□ 0.88
PDLIM7-208ENST00000493815 IGHA2P01877 340 aa20.52■□□□□ 0.88
PDLIM7-208ENST00000493815 HMGCRP04035 888 aa20.52■□□□□ 0.88
PDLIM7-208ENST00000493815 ARHGEF16Q5VV41 709 aa20.52■□□□□ 0.88
PDLIM7-208ENST00000493815 ARMCX2Q7L311 632 aa20.52■□□□□ 0.88
PDLIM7-208ENST00000493815 CCDC148Q8NFR7 591 aa20.52■□□□□ 0.88
PDLIM7-208ENST00000493815 RASGRP4Q8TDF6 673 aa20.52■□□□□ 0.88
PDLIM7-208ENST00000493815 WASF1Q92558 559 aa20.52■□□□□ 0.88
PDLIM7-208ENST00000493815 C6orf50Q9HD87 102 aa20.52■□□□□ 0.88
PDLIM7-208ENST00000493815 ADD3Q9UEY8 706 aaKnown RBP20.52■□□□□ 0.88
PDLIM7-208ENST00000493815 SNAI1O95863 264 aaPredicted RBP20.51■□□□□ 0.87
PDLIM7-208ENST00000493815 PRKAR2AP13861 404 aaKnown RBP20.51■□□□□ 0.87
PDLIM7-208ENST00000493815 GUCY1B3Q02153 619 aa20.51■□□□□ 0.87
PDLIM7-208ENST00000493815 CACNB2Q08289 660 aaPredicted RBP20.51■□□□□ 0.87
PDLIM7-208ENST00000493815 CUL4AQ13619 759 aa20.51■□□□□ 0.87
PDLIM7-208ENST00000493815 JAKMIP3Q5VZ66 844 aa20.51■□□□□ 0.87
PDLIM7-208ENST00000493815 MFSD14CQ5VZR4 134 aa20.51■□□□□ 0.87
PDLIM7-208ENST00000493815 EEPD1Q7L9B9 569 aa20.51■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms