RNA–Protein interactions for RNA: ENST00000493727.5

UPF3A-210, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 937 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-210ENST00000493727 LINC01559Q495D7 138 aa14.28□□□□□ -0.12
UPF3A-210ENST00000493727 CREB3L3Q68CJ9 461 aa14.28□□□□□ -0.12
UPF3A-210ENST00000493727 TMEM179Q6ZVK1 233 aa14.28□□□□□ -0.12
UPF3A-210ENST00000493727 ACER1Q8TDN7 264 aa14.28□□□□□ -0.12
UPF3A-210ENST00000493727 GUCD1Q96NT3 240 aa14.28□□□□□ -0.12
UPF3A-210ENST00000493727 COL25A1Q9BXS0 654 aaPredicted RBP14.28□□□□□ -0.12
UPF3A-210ENST00000493727 SH2D4AQ9H788 454 aa14.28□□□□□ -0.12
UPF3A-210ENST00000493727 HOXC10Q9NYD6 342 aa14.28□□□□□ -0.12
UPF3A-210ENST00000493727 PKD2L1Q9P0L9 805 aa14.28□□□□□ -0.12
UPF3A-210ENST00000493727 ZNF236Q9UL36 1845 aa14.27□□□□□ -0.12
UPF3A-210ENST00000493727 SLC27A2O14975 620 aa14.27□□□□□ -0.13
UPF3A-210ENST00000493727 GDF9O60383 454 aa14.27□□□□□ -0.13
UPF3A-210ENST00000493727 CNMDO75829 334 aa14.27□□□□□ -0.13
UPF3A-210ENST00000493727 SLC3A2P08195 630 aaKnown RBP14.27□□□□□ -0.13
UPF3A-210ENST00000493727 GUCY1A2P33402 732 aa14.27□□□□□ -0.13
UPF3A-210ENST00000493727 HSPA4P34932 840 aa14.27□□□□□ -0.13
UPF3A-210ENST00000493727 SEPT2Q15019 361 aa14.27□□□□□ -0.13
UPF3A-210ENST00000493727 WDR78Q5VTH9 848 aa14.27□□□□□ -0.13
UPF3A-210ENST00000493727 MFSD14CQ5VZR4 134 aa14.27□□□□□ -0.13
UPF3A-210ENST00000493727 FAM109BQ6ICB4 259 aaPredicted RBP14.27□□□□□ -0.13
UPF3A-210ENST00000493727 ZNF511Q8NB15 262 aa14.27□□□□□ -0.13
UPF3A-210ENST00000493727 ARMC2Q8NEN0 867 aa14.27□□□□□ -0.13
UPF3A-210ENST00000493727 LPAR1Q92633 364 aa14.27□□□□□ -0.13
UPF3A-210ENST00000493727 CCDC17Q96LX7 622 aa14.27□□□□□ -0.13
UPF3A-210ENST00000493727 TBC1D32Q96NH3 1257 aa14.27□□□□□ -0.13
UPF3A-210ENST00000493727 RPAP3Q9H6T3 665 aaPredicted RBP14.27□□□□□ -0.13
UPF3A-210ENST00000493727 ARHGEF10LQ9HCE6 1279 aa14.27□□□□□ -0.13
UPF3A-210ENST00000493727 ZNFX1Q9P2E3 1918 aaKnown RBP14.26□□□□□ -0.13
UPF3A-210ENST00000493727 USP17L12C9JPN9 530 aa14.26□□□□□ -0.13
UPF3A-210ENST00000493727 USP17L21D6R901 530 aa14.26□□□□□ -0.13
UPF3A-210ENST00000493727 PPARAQ07869 468 aa14.26□□□□□ -0.13
UPF3A-210ENST00000493727 COG2Q14746 738 aa14.26□□□□□ -0.13
UPF3A-210ENST00000493727 NECTIN1Q15223 517 aa14.26□□□□□ -0.13
UPF3A-210ENST00000493727 MB21D1Q8N884 522 aa14.26□□□□□ -0.13
UPF3A-210ENST00000493727 FLRT1Q9NZU1 646 aa14.26□□□□□ -0.13
UPF3A-210ENST00000493727 PARP14Q460N5 1801 aa14.25□□□□□ -0.13
UPF3A-210ENST00000493727 A0A0G2JMZ2 1700 aa14.25□□□□□ -0.13
UPF3A-210ENST00000493727 STRNO43815 780 aa14.25□□□□□ -0.13
UPF3A-210ENST00000493727 MSCO60682 206 aa14.25□□□□□ -0.13
UPF3A-210ENST00000493727 IGHA2P01877 340 aa14.25□□□□□ -0.13
UPF3A-210ENST00000493727 CYP21A2P08686 494 aa14.25□□□□□ -0.13
UPF3A-210ENST00000493727 HOXC6P09630 235 aa14.25□□□□□ -0.13
UPF3A-210ENST00000493727 CYP2D6P10635 497 aa14.25□□□□□ -0.13
UPF3A-210ENST00000493727 RBM25P49756 843 aaKnown RBP14.25□□□□□ -0.13
UPF3A-210ENST00000493727 CTR9Q6PD62 1173 aa14.25□□□□□ -0.13
UPF3A-210ENST00000493727 PHF6Q8IWS0 365 aaKnown RBP eCLIP14.25□□□□□ -0.13
UPF3A-210ENST00000493727 STK11IPQ8N1F8 1099 aa14.25□□□□□ -0.13
UPF3A-210ENST00000493727 FKBPLQ9UIM3 349 aa14.25□□□□□ -0.13
UPF3A-210ENST00000493727 CYP2D7A0A087X1C5 515 aa14.24□□□□□ -0.13
UPF3A-210ENST00000493727 ANAPC15P60006 121 aa14.24□□□□□ -0.13
UPF3A-210ENST00000493727 ATP2B2Q01814 1243 aa14.24□□□□□ -0.13
UPF3A-210ENST00000493727 ICA1Q05084 483 aa14.24□□□□□ -0.13
UPF3A-210ENST00000493727 GRB14Q14449 540 aa14.24□□□□□ -0.13
UPF3A-210ENST00000493727 KRT32Q14532 448 aa14.24□□□□□ -0.13
UPF3A-210ENST00000493727 SBK1Q52WX2 424 aa14.24□□□□□ -0.13
UPF3A-210ENST00000493727 C12orf60Q5U649 245 aa14.24□□□□□ -0.13
UPF3A-210ENST00000493727 SHCBP1Q8NEM2 672 aa14.24□□□□□ -0.13
UPF3A-210ENST00000493727 TANGO6Q9C0B7 1094 aa14.24□□□□□ -0.13
UPF3A-210ENST00000493727 RNF41Q9H4P4 317 aaPredicted RBP14.24□□□□□ -0.13
UPF3A-210ENST00000493727 TOMM22Q9NS69 142 aa14.24□□□□□ -0.13
UPF3A-210ENST00000493727 BTBD7Q9P203 1132 aa14.24□□□□□ -0.13
UPF3A-210ENST00000493727 SNX14Q9Y5W7 946 aa14.24□□□□□ -0.13
UPF3A-210ENST00000493727 A0A1W2PRG0 241 aa14.23□□□□□ -0.13
UPF3A-210ENST00000493727 WNT7AO00755 349 aa14.23□□□□□ -0.13
UPF3A-210ENST00000493727 PSMA5P28066 241 aa14.23□□□□□ -0.13
UPF3A-210ENST00000493727 TRDNQ13061 729 aa14.23□□□□□ -0.13
UPF3A-210ENST00000493727 RRP12Q5JTH9 1297 aaKnown RBP14.23□□□□□ -0.13
UPF3A-210ENST00000493727 C16orf86Q6ZW13 317 aa14.23□□□□□ -0.13
UPF3A-210ENST00000493727 RALYLQ86SE5 291 aaKnown RBP14.23□□□□□ -0.13
UPF3A-210ENST00000493727 SLC44A5Q8NCS7 719 aa14.23□□□□□ -0.13
UPF3A-210ENST00000493727 SLC5A4Q9NY91 659 aa14.23□□□□□ -0.13
UPF3A-210ENST00000493727 DDX20Q9UHI6 824 aaKnown RBP14.23□□□□□ -0.13
UPF3A-210ENST00000493727 TMX2Q9Y320 296 aa14.23□□□□□ -0.13
UPF3A-210ENST00000493727 COL11A1P12107 1806 aaPredicted RBP14.22□□□□□ -0.13
UPF3A-210ENST00000493727 WDR46O15213 610 aaKnown RBP14.22□□□□□ -0.13
UPF3A-210ENST00000493727 CDK8P49336 464 aa14.22□□□□□ -0.13
UPF3A-210ENST00000493727 PRR20EP86478 221 aa14.22□□□□□ -0.13
UPF3A-210ENST00000493727 PRR20CP86479 221 aa14.22□□□□□ -0.13
UPF3A-210ENST00000493727 PRR20DP86480 221 aa14.22□□□□□ -0.13
UPF3A-210ENST00000493727 PRR20BP86481 221 aa14.22□□□□□ -0.13
UPF3A-210ENST00000493727 PRR20AP86496 221 aa14.22□□□□□ -0.13
UPF3A-210ENST00000493727 PDE4BQ07343 736 aa14.22□□□□□ -0.13
UPF3A-210ENST00000493727 MCM6Q14566 821 aa14.22□□□□□ -0.13
UPF3A-210ENST00000493727 MFSD6Q6ZSS7 791 aa14.22□□□□□ -0.13
UPF3A-210ENST00000493727 DPP9Q86TI2 863 aa14.22□□□□□ -0.13
UPF3A-210ENST00000493727 TBC1D10CQ8IV04 446 aa14.22□□□□□ -0.13
UPF3A-210ENST00000493727 GPKOWQ92917 476 aaPredicted RBP eCLIP14.22□□□□□ -0.13
UPF3A-210ENST00000493727 KCNB2Q92953 911 aa14.22□□□□□ -0.13
UPF3A-210ENST00000493727 DYNLL2Q96FJ2 89 aa14.22□□□□□ -0.13
UPF3A-210ENST00000493727 JAKMIP1Q96N16 626 aaKnown RBP14.22□□□□□ -0.13
UPF3A-210ENST00000493727 SENP6Q9GZR1 1112 aaPredicted RBP14.22□□□□□ -0.13
UPF3A-210ENST00000493727 SPATC1LQ9H0A9 340 aa14.22□□□□□ -0.13
UPF3A-210ENST00000493727 VCPKMTQ9H867 229 aa14.22□□□□□ -0.13
UPF3A-210ENST00000493727 KANSL2Q9H9L4 492 aa14.22□□□□□ -0.13
UPF3A-210ENST00000493727 ZNF287Q9HBT7 754 aa14.22□□□□□ -0.13
UPF3A-210ENST00000493727 ANAPC4Q9UJX5 808 aa14.22□□□□□ -0.13
UPF3A-210ENST00000493727 LAMA4Q16363 1823 aa14.22□□□□□ -0.13
UPF3A-210ENST00000493727 E7EWF7 191 aa14.21□□□□□ -0.13
UPF3A-210ENST00000493727 DNM1LO00429 736 aa14.21□□□□□ -0.13
UPF3A-210ENST00000493727 FLOT1O75955 427 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms