RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 FAM217BQ9NTX9 383 aaPredicted RBP11.94□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 PRPF3O43395 683 aaKnown RBP11.94□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 ZFYVE27Q5T4F4 411 aa11.94□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 ZFPM1Q8IX07 1006 aa11.94□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 CSGALNACT2Q8N6G5 542 aa11.94□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 NELFBQ8WX92 580 aa11.94□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 COA1Q9GZY4 146 aa11.94□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 MAN1B1Q9UKM7 699 aa11.94□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 TUBGCP6Q96RT7 1819 aa11.93□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 FRMD3A2A2Y4 597 aa11.93□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 TRIM49BA6NDI0 452 aa11.93□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 TRAF5O00463 557 aa11.93□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 OPA1O60313 960 aa11.93□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 CUL4BQ13620 913 aa11.93□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 HERC4Q5GLZ8 1057 aaPredicted RBP11.93□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 ARHGAP27Q6ZUM4 889 aa11.93□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 BCCIPQ9P287 314 aaKnown RBP eCLIP11.93□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 GUCA1BQ9UMX6 200 aa11.93□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 FZD1Q9UP38 647 aa11.93□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 CCDC151A5D8V7 595 aa11.93□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 HSF2BPO75031 334 aa11.93□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 ALAS1P13196 640 aa11.93□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 RASA1P20936 1047 aa11.93□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 PEX19P40855 299 aa11.93□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 AP1ARQ63HQ0 302 aa11.93□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 NEK8Q86SG6 692 aa11.93□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 FAM71BQ8TC56 605 aa11.93□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 A0A1W2PQ27 194 aa11.93□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 A0A1W2PQ64 194 aa11.93□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 A0A1W2PQD8 194 aa11.93□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 TTLL1O95922 423 aa11.93□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 BMP15O95972 392 aa11.93□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 EEF2P13639 858 aaKnown RBP11.93□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 DPF2Q92785 391 aa11.93□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 FAM207AQ9NSI2 230 aaPredicted RBP11.93□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 CLEC11AQ9Y240 323 aa11.93□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 RGPD1P0DJD0 1748 aa11.93□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 EP400Q96L91 3159 aa11.93□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 KIF1CO43896 1103 aaKnown RBP11.92□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 TDP2O95551 362 aa11.92□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 R3HDM1Q15032 1099 aaKnown RBP11.92□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 DCAF17Q5H9S7 520 aaPredicted RBP11.92□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 CEP85LQ5SZL2 805 aa11.92□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 TPH2Q8IWU9 490 aa11.92□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 TTLL6Q8N841 843 aa11.92□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 CAPZA3Q96KX2 299 aa11.92□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 SLC24A3Q9HC58 644 aa11.92□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 JADE2Q9NQC1 790 aa11.92□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 PCDHA4Q9UN74 947 aa11.92□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 KIF1AQ12756 1690 aa11.92□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 TCHHQ07283 1943 aa11.92□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 MRC1P22897 1456 aa11.92□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 PPFIA4O75335 1185 aa11.92□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 PLA2G4AP47712 749 aa11.92□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 NEDD9Q14511 834 aa11.92□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 NTRK3Q16288 839 aa11.92□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 CDC42EP5Q6NZY7 148 aa11.92□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 SYCP3Q8IZU3 236 aa11.92□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.92□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 AMPD3Q01432 767 aa11.92□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 SV2BQ7L1I2 683 aa11.92□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 METTL16Q86W50 562 aaKnown RBP11.92□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 ODF2LQ9ULJ1 636 aa11.92□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 PCDHA12Q9UN75 941 aa11.92□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 ATP6V0A2Q9Y487 856 aa11.92□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 SFI1A8K8P3 1242 aa11.91□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 BIRC2Q13490 618 aa11.91□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 PLA2G4DQ86XP0 818 aa11.91□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 ZNF512BQ96KM6 892 aaPredicted RBP11.91□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 NLRC4Q9NPP4 1024 aa11.91□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 RFX7Q2KHR2 1363 aa11.91□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 OR52Z1P0C646 297 aa11.91□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 ADRA2BP18089 450 aa11.91□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 PTPREP23469 700 aa11.91□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 TOB1P50616 345 aaPredicted RBP11.91□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 TBC1D8BQ0IIM8 1120 aa11.91□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 PAK1Q13153 545 aa11.91□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 PABPC4Q13310 644 aaKnown RBP eCLIP11.91□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 SLC27A3Q5K4L6 730 aa11.91□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 ZNF384Q8TF68 577 aa11.91□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 N4BP2L2Q92802 583 aaPredicted RBP11.91□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 CABS1Q96KC9 395 aa11.91□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 TMEM60Q9H2L4 133 aa11.91□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 ARHGAP25P42331 645 aa11.91□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 RNASE9P60153 205 aaKnown RBP11.91□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 MAATS1Q7Z4T9 603 aa11.91□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 FERMT2Q96AC1 680 aa11.91□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 MED4Q9NPJ6 270 aa11.91□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 DDX4Q9NQI0 724 aaKnown RBP11.91□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 PPP2R2CQ9Y2T4 447 aa11.91□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 POLRMTO00411 1230 aaKnown RBP11.9□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 WNT7AO00755 349 aa11.9□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 AKR1B10O60218 316 aa11.9□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 PAFAH1B1P43034 410 aa11.9□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 MKRN3Q13064 507 aaKnown RBP11.9□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 PFKFB3Q16875 520 aaPredicted RBP11.9□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 SLC10A5Q5PT55 438 aa11.9□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 KRT25Q7Z3Z0 450 aa11.9□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 TAX1BP1Q86VP1 789 aa11.9□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 DGKHQ86XP1 1220 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms