RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 TMEM63BQ5T3F8 832 aa28.7■■■□□ 2.18
UPF3A-209ENST00000492270 KLHDC9Q8NEP7 349 aa28.7■■■□□ 2.18
UPF3A-209ENST00000492270 TMEM87BQ96K49 555 aa28.7■■■□□ 2.18
UPF3A-209ENST00000492270 AMNQ9BXJ7 453 aa28.7■■■□□ 2.18
UPF3A-209ENST00000492270 RIOX1Q9H6W3 641 aa28.7■■■□□ 2.18
UPF3A-209ENST00000492270 TRIOBPQ9H2D6 2365 aa28.69■■■□□ 2.18
UPF3A-209ENST00000492270 RANBP2P49792 3224 aaKnown RBP28.69■■■□□ 2.18
UPF3A-209ENST00000492270 A0A1W2PQ45 241 aaPredicted RBP28.69■■■□□ 2.18
UPF3A-209ENST00000492270 A0A1W2PQY0 241 aa28.69■■■□□ 2.18
UPF3A-209ENST00000492270 C6orf222P0C671 652 aaPredicted RBP28.69■■■□□ 2.18
UPF3A-209ENST00000492270 TNFAIP2Q03169 654 aa28.69■■■□□ 2.18
UPF3A-209ENST00000492270 ADCK5Q3MIX3 580 aa28.69■■■□□ 2.18
UPF3A-209ENST00000492270 CCSAPQ6IQ19 270 aaPredicted RBP28.69■■■□□ 2.18
UPF3A-209ENST00000492270 NFXL1Q6ZNB6 911 aa28.69■■■□□ 2.18
UPF3A-209ENST00000492270 RGS22Q8NE09 1264 aa28.69■■■□□ 2.18
UPF3A-209ENST00000492270 UPF3AQ9H1J1 476 aaKnown RBP28.69■■■□□ 2.18
UPF3A-209ENST00000492270 COL20A1Q9P218 1284 aa28.69■■■□□ 2.18
UPF3A-209ENST00000492270 ATP11BQ9Y2G3 1177 aa28.69■■■□□ 2.18
UPF3A-209ENST00000492270 MRPL11Q9Y3B7 192 aaKnown RBP28.69■■■□□ 2.18
UPF3A-209ENST00000492270 OPLAHO14841 1288 aa28.68■■■□□ 2.18
UPF3A-209ENST00000492270 DDAH1O94760 285 aa28.68■■■□□ 2.18
UPF3A-209ENST00000492270 SMPD1P17405 629 aa28.68■■■□□ 2.18
UPF3A-209ENST00000492270 GJA9P57773 515 aa28.68■■■□□ 2.18
UPF3A-209ENST00000492270 RAB11FIP4Q86YS3 637 aa28.68■■■□□ 2.18
UPF3A-209ENST00000492270 PRO3102Q9H379 93 aa28.68■■■□□ 2.18
UPF3A-209ENST00000492270 VTA1Q9NP79 307 aa28.68■■■□□ 2.18
UPF3A-209ENST00000492270 RBM27Q9P2N5 1060 aaKnown RBP28.68■■■□□ 2.18
UPF3A-209ENST00000492270 CCDC69A6NI79 296 aa28.67■■■□□ 2.18
UPF3A-209ENST00000492270 CTAGE5O15320 804 aa28.67■■■□□ 2.18
UPF3A-209ENST00000492270 RXRAP19793 462 aa28.67■■■□□ 2.18
UPF3A-209ENST00000492270 ACLYP53396 1101 aa28.67■■■□□ 2.18
UPF3A-209ENST00000492270 SNX17Q15036 470 aa28.67■■■□□ 2.18
UPF3A-209ENST00000492270 KCNA10Q16322 511 aa28.67■■■□□ 2.18
UPF3A-209ENST00000492270 NOL8Q76FK4 1167 aaKnown RBP28.67■■■□□ 2.18
UPF3A-209ENST00000492270 SYTL5Q8TDW5 730 aaPredicted RBP28.67■■■□□ 2.18
UPF3A-209ENST00000492270 TCEANC2Q96MN5 208 aa28.67■■■□□ 2.18
UPF3A-209ENST00000492270 NEK1Q96PY6 1258 aa28.67■■■□□ 2.18
UPF3A-209ENST00000492270 GNEQ9Y223 722 aaKnown RBP28.67■■■□□ 2.18
UPF3A-209ENST00000492270 LOC102724159A0A0B4J2E5 919 aa28.66■■■□□ 2.18
UPF3A-209ENST00000492270 EDNRBP24530 442 aa28.66■■■□□ 2.18
UPF3A-209ENST00000492270 CST5P28325 142 aaPredicted RBP28.66■■■□□ 2.18
UPF3A-209ENST00000492270 LIFRP42702 1097 aa28.66■■■□□ 2.18
UPF3A-209ENST00000492270 PWP2Q15269 919 aaKnown RBP28.66■■■□□ 2.18
UPF3A-209ENST00000492270 TRIM60Q495X7 471 aa28.66■■■□□ 2.18
UPF3A-209ENST00000492270 ERICH6BQ5W0A0 696 aa28.66■■■□□ 2.18
UPF3A-209ENST00000492270 DNERQ8NFT8 737 aa28.66■■■□□ 2.18
UPF3A-209ENST00000492270 CTCFLQ8NI51 663 aaPredicted RBP28.66■■■□□ 2.18
UPF3A-209ENST00000492270 PIBF1Q8WXW3 757 aa28.66■■■□□ 2.18
UPF3A-209ENST00000492270 TAAR1Q96RJ0 339 aa28.66■■■□□ 2.18
UPF3A-209ENST00000492270 TSEN34Q9BSV6 310 aaKnown RBP28.66■■■□□ 2.18
UPF3A-209ENST00000492270 PCDHA1Q9Y5I3 950 aa28.66■■■□□ 2.18
UPF3A-209ENST00000492270 BEX3Q00994 111 aa28.65■■■□□ 2.18
UPF3A-209ENST00000492270 PDE4DQ08499 809 aa28.65■■■□□ 2.18
UPF3A-209ENST00000492270 TSGA10IPQ3SY00 556 aa28.65■■■□□ 2.18
UPF3A-209ENST00000492270 TLK2Q86UE8 772 aa28.65■■■□□ 2.18
UPF3A-209ENST00000492270 MCF2L2Q86YR7 1114 aa28.65■■■□□ 2.18
UPF3A-209ENST00000492270 MAP3K14Q99558 947 aa28.65■■■□□ 2.18
UPF3A-209ENST00000492270 PLEKHA8P1O95397 391 aa28.64■■■□□ 2.18
UPF3A-209ENST00000492270 CFBP00751 764 aa28.64■■■□□ 2.18
UPF3A-209ENST00000492270 IQSEC1Q6DN90 963 aa28.64■■■□□ 2.18
UPF3A-209ENST00000492270 TMTC2Q8N394 836 aa28.64■■■□□ 2.18
UPF3A-209ENST00000492270 SPC25Q9HBM1 224 aa28.64■■■□□ 2.18
UPF3A-209ENST00000492270 KIF5BP33176 963 aa28.63■■■□□ 2.17
UPF3A-209ENST00000492270 MAGEA10P43363 369 aaPredicted RBP28.63■■■□□ 2.17
UPF3A-209ENST00000492270 EXOSC10Q01780 885 aaKnown RBP28.63■■■□□ 2.17
UPF3A-209ENST00000492270 GNASQ5JWF2 1037 aa28.63■■■□□ 2.17
UPF3A-209ENST00000492270 GDF15Q99988 308 aa28.63■■■□□ 2.17
UPF3A-209ENST00000492270 MAF1Q9H063 256 aa28.63■■■□□ 2.17
UPF3A-209ENST00000492270 PNMA6FA0A0J9YX94 578 aa28.62■■■□□ 2.17
UPF3A-209ENST00000492270 MOXD2PA6NHM9 499 aa28.62■■■□□ 2.17
UPF3A-209ENST00000492270 ASGR1P07306 291 aa28.62■■■□□ 2.17
UPF3A-209ENST00000492270 CMTR1Q8N1G2 835 aaKnown RBP28.62■■■□□ 2.17
UPF3A-209ENST00000492270 STARD7Q9NQZ5 370 aa28.62■■■□□ 2.17
UPF3A-209ENST00000492270 DYNC1LI2O43237 492 aaPredicted RBP28.61■■■□□ 2.17
UPF3A-209ENST00000492270 HSD17B4P51659 736 aa28.61■■■□□ 2.17
UPF3A-209ENST00000492270 NKX3-2P78367 333 aa28.61■■■□□ 2.17
UPF3A-209ENST00000492270 GHRHRQ02643 423 aa28.61■■■□□ 2.17
UPF3A-209ENST00000492270 C1orf53Q5VUE5 145 aa28.61■■■□□ 2.17
UPF3A-209ENST00000492270 SGMS1Q86VZ5 419 aa28.61■■■□□ 2.17
UPF3A-209ENST00000492270 SRBD1Q8N5C6 995 aaKnown RBP28.61■■■□□ 2.17
UPF3A-209ENST00000492270 PCSK9Q8NBP7 692 aaKnown RBP28.61■■■□□ 2.17
UPF3A-209ENST00000492270 MPHOSPH6Q99547 160 aaKnown RBP28.61■■■□□ 2.17
UPF3A-209ENST00000492270 SPZ1Q9BXG8 430 aa28.61■■■□□ 2.17
UPF3A-209ENST00000492270 WDR11Q9BZH6 1224 aa28.61■■■□□ 2.17
UPF3A-209ENST00000492270 SLC12A7Q9Y666 1083 aa28.61■■■□□ 2.17
UPF3A-209ENST00000492270 RBM47A0AV96 593 aaKnown RBP28.6■■■□□ 2.17
UPF3A-209ENST00000492270 CPA1P15085 419 aa28.6■■■□□ 2.17
UPF3A-209ENST00000492270 HOXA13P31271 388 aaPredicted RBP28.6■■■□□ 2.17
UPF3A-209ENST00000492270 HSPA4P34932 840 aa28.6■■■□□ 2.17
UPF3A-209ENST00000492270 KRT32Q14532 448 aa28.6■■■□□ 2.17
UPF3A-209ENST00000492270 DUSP28Q4G0W2 176 aa28.6■■■□□ 2.17
UPF3A-209ENST00000492270 DHX32Q7L7V1 743 aaKnown RBP28.6■■■□□ 2.17
UPF3A-209ENST00000492270 MICU3Q86XE3 530 aa28.6■■■□□ 2.17
UPF3A-209ENST00000492270 KCNB2Q92953 911 aa28.6■■■□□ 2.17
UPF3A-209ENST00000492270 RMDN3Q96TC7 470 aa28.6■■■□□ 2.17
UPF3A-209ENST00000492270 AP5M1Q9H0R1 490 aa28.6■■■□□ 2.17
UPF3A-209ENST00000492270 MYH7BA7E2Y1 1941 aa28.59■■■□□ 2.17
UPF3A-209ENST00000492270 EIF2AK2P19525 551 aaKnown RBP28.59■■■□□ 2.17
UPF3A-209ENST00000492270 TLE2Q04725 743 aa28.59■■■□□ 2.17
UPF3A-209ENST00000492270 NSUN6Q8TEA1 469 aaKnown RBP28.59■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms