RNA–Protein interactions for RNA: ENST00000489741.1

PRPF40A-210, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 776 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-210ENST00000489741 PI4KAP2A4QPH2 592 aa8.16□□□□□ -1.1
PRPF40A-210ENST00000489741 GAS2O43903 313 aaKnown RBP8.16□□□□□ -1.1
PRPF40A-210ENST00000489741 ASTN2O75129 1339 aaPredicted RBP8.16□□□□□ -1.1
PRPF40A-210ENST00000489741 UFL1O94874 794 aa8.16□□□□□ -1.1
PRPF40A-210ENST00000489741 DDX58O95786 925 aaKnown RBP8.16□□□□□ -1.1
PRPF40A-210ENST00000489741 PREPP48147 710 aa8.16□□□□□ -1.1
PRPF40A-210ENST00000489741 PLCB3Q01970 1234 aa8.16□□□□□ -1.1
PRPF40A-210ENST00000489741 GRM1Q13255 1194 aa8.16□□□□□ -1.1
PRPF40A-210ENST00000489741 ZNF423Q2M1K9 1284 aa8.16□□□□□ -1.1
PRPF40A-210ENST00000489741 RGMBQ6NW40 437 aa8.16□□□□□ -1.1
PRPF40A-210ENST00000489741 ANKRD18AQ8IVF6 992 aa8.16□□□□□ -1.1
PRPF40A-210ENST00000489741 ZSCAN29Q8IWY8 852 aaPredicted RBP8.16□□□□□ -1.1
PRPF40A-210ENST00000489741 ARMC10Q8N2F6 343 aa8.16□□□□□ -1.1
PRPF40A-210ENST00000489741 PI4KAP1Q8N8J0 262 aa8.16□□□□□ -1.1
PRPF40A-210ENST00000489741 DCPSQ96C86 337 aaKnown RBP8.16□□□□□ -1.1
PRPF40A-210ENST00000489741 MYRFLQ96LU7 910 aa8.16□□□□□ -1.1
PRPF40A-210ENST00000489741 ZNF576Q9H609 170 aa8.16□□□□□ -1.1
PRPF40A-210ENST00000489741 ZNF408Q9H9D4 720 aa8.16□□□□□ -1.1
PRPF40A-210ENST00000489741 GBA2Q9HCG7 927 aaPredicted RBP8.16□□□□□ -1.1
PRPF40A-210ENST00000489741 ABCB6Q9NP58 842 aa8.16□□□□□ -1.1
PRPF40A-210ENST00000489741 BSDC1Q9NW68 430 aaPredicted RBP8.16□□□□□ -1.1
PRPF40A-210ENST00000489741 STOML1Q9UBI4 398 aa8.16□□□□□ -1.1
PRPF40A-210ENST00000489741 MINPP1Q9UNW1 487 aa8.16□□□□□ -1.1
PRPF40A-210ENST00000489741 MAP3K2Q9Y2U5 619 aa8.16□□□□□ -1.1
PRPF40A-210ENST00000489741 TAF1P21675 1872 aa8.15□□□□□ -1.1
PRPF40A-210ENST00000489741 DDX60Q8IY21 1712 aaKnown RBP8.15□□□□□ -1.1
PRPF40A-210ENST00000489741 XDHP47989 1333 aa8.15□□□□□ -1.1
PRPF40A-210ENST00000489741 PNMA6FA0A0J9YX94 578 aa8.15□□□□□ -1.1
PRPF40A-210ENST00000489741 ADM5C9JUS6 153 aa8.15□□□□□ -1.1
PRPF40A-210ENST00000489741 TREHO43280 583 aa8.15□□□□□ -1.1
PRPF40A-210ENST00000489741 FSTP19883 344 aa8.15□□□□□ -1.1
PRPF40A-210ENST00000489741 ITPKAP23677 461 aa8.15□□□□□ -1.1
PRPF40A-210ENST00000489741 CASP7P55210 303 aa8.15□□□□□ -1.1
PRPF40A-210ENST00000489741 CTSWP56202 376 aa8.15□□□□□ -1.1
PRPF40A-210ENST00000489741 KIF4BQ2VIQ3 1234 aa8.15□□□□□ -1.1
PRPF40A-210ENST00000489741 G2E3Q7L622 706 aa8.15□□□□□ -1.1
PRPF40A-210ENST00000489741 C2orf69Q8N8R5 385 aa8.15□□□□□ -1.1
PRPF40A-210ENST00000489741 IL16Q14005 1332 aa8.14□□□□□ -1.11
PRPF40A-210ENST00000489741 TMEM238LA0A1B0GVL6 79 aa8.14□□□□□ -1.11
PRPF40A-210ENST00000489741 MEGF11A6BM72 1044 aa8.14□□□□□ -1.11
PRPF40A-210ENST00000489741 B3GALT4O96024 378 aa8.14□□□□□ -1.11
PRPF40A-210ENST00000489741 CYP11A1P05108 521 aa8.14□□□□□ -1.11
PRPF40A-210ENST00000489741 CSF1RP07333 972 aa8.14□□□□□ -1.11
PRPF40A-210ENST00000489741 KIF23Q02241 960 aaPredicted RBP8.14□□□□□ -1.11
PRPF40A-210ENST00000489741 GRM2Q14416 872 aa8.14□□□□□ -1.11
PRPF40A-210ENST00000489741 Q8N3U1 123 aa8.14□□□□□ -1.11
PRPF40A-210ENST00000489741 C12orf50Q8NA57 414 aaPredicted RBP8.14□□□□□ -1.11
PRPF40A-210ENST00000489741 TSR2Q969E8 191 aaKnown RBP8.14□□□□□ -1.11
PRPF40A-210ENST00000489741 CDC5LQ99459 802 aaKnown RBP8.14□□□□□ -1.11
PRPF40A-210ENST00000489741 PLA2G12BQ9BX93 195 aa8.14□□□□□ -1.11
PRPF40A-210ENST00000489741 TMPRSS13Q9BYE2 586 aa8.14□□□□□ -1.11
PRPF40A-210ENST00000489741 MCOLN1Q9GZU1 580 aa8.14□□□□□ -1.11
PRPF40A-210ENST00000489741 KCNF1Q9H3M0 494 aa8.14□□□□□ -1.11
PRPF40A-210ENST00000489741 GREM2Q9H772 168 aa8.14□□□□□ -1.11
PRPF40A-210ENST00000489741 CYP4F12Q9HCS2 524 aa8.14□□□□□ -1.11
PRPF40A-210ENST00000489741 SAGE1Q9NXZ1 904 aa8.14□□□□□ -1.11
PRPF40A-210ENST00000489741 GGA3Q9NZ52 723 aa8.14□□□□□ -1.11
PRPF40A-210ENST00000489741 TRPM7Q96QT4 1865 aa8.14□□□□□ -1.11
PRPF40A-210ENST00000489741 PITPNM2Q9BZ72 1349 aa8.13□□□□□ -1.11
PRPF40A-210ENST00000489741 DLGAP3O95886 979 aa8.13□□□□□ -1.11
PRPF40A-210ENST00000489741 BMP3P12645 472 aa8.13□□□□□ -1.11
PRPF40A-210ENST00000489741 PDIA4P13667 645 aaKnown RBP8.13□□□□□ -1.11
PRPF40A-210ENST00000489741 MAOBP27338 520 aa8.13□□□□□ -1.11
PRPF40A-210ENST00000489741 MMP14P50281 582 aa8.13□□□□□ -1.11
PRPF40A-210ENST00000489741 CCT4P50991 539 aaKnown RBP8.13□□□□□ -1.11
PRPF40A-210ENST00000489741 ZNF157P51786 506 aaPredicted RBP8.13□□□□□ -1.11
PRPF40A-210ENST00000489741 FKBP1BP68106 108 aa8.13□□□□□ -1.11
PRPF40A-210ENST00000489741 PTPN12Q05209 780 aaKnown RBP8.13□□□□□ -1.11
PRPF40A-210ENST00000489741 GCKRQ14397 625 aa8.13□□□□□ -1.11
PRPF40A-210ENST00000489741 DSC3Q14574 896 aa8.13□□□□□ -1.11
PRPF40A-210ENST00000489741 ENOX2Q16206 610 aaKnown RBP8.13□□□□□ -1.11
PRPF40A-210ENST00000489741 CWF19L2Q2TBE0 894 aaKnown RBP8.13□□□□□ -1.11
PRPF40A-210ENST00000489741 TWISTNBQ3B726 338 aaPredicted RBP8.13□□□□□ -1.11
PRPF40A-210ENST00000489741 DACT2Q5SW24 774 aa8.13□□□□□ -1.11
PRPF40A-210ENST00000489741 PI16Q6UXB8 463 aa8.13□□□□□ -1.11
PRPF40A-210ENST00000489741 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.13□□□□□ -1.11
PRPF40A-210ENST00000489741 CDCA5Q96FF9 252 aa8.13□□□□□ -1.11
PRPF40A-210ENST00000489741 MYOZ2Q9NPC6 264 aa8.13□□□□□ -1.11
PRPF40A-210ENST00000489741 RNF186Q9NXI6 227 aa8.13□□□□□ -1.11
PRPF40A-210ENST00000489741 PPP4R2Q9NY27 417 aa8.13□□□□□ -1.11
PRPF40A-210ENST00000489741 MED23Q9ULK4 1368 aa8.12□□□□□ -1.11
PRPF40A-210ENST00000489741 CCDC85CA6NKD9 419 aa8.12□□□□□ -1.11
PRPF40A-210ENST00000489741 GSC2O15499 205 aa8.12□□□□□ -1.11
PRPF40A-210ENST00000489741 VAMP4O75379 141 aa8.12□□□□□ -1.11
PRPF40A-210ENST00000489741 MAPK8P45983 427 aa8.12□□□□□ -1.11
PRPF40A-210ENST00000489741 NEXNQ0ZGT2 675 aa8.12□□□□□ -1.11
PRPF40A-210ENST00000489741 POU4F3Q15319 338 aa8.12□□□□□ -1.11
PRPF40A-210ENST00000489741 EXOSC6Q5RKV6 272 aaKnown RBP8.12□□□□□ -1.11
PRPF40A-210ENST00000489741 HP1BP3Q5SSJ5 553 aaPredicted RBP8.12□□□□□ -1.11
PRPF40A-210ENST00000489741 STRIP1Q5VSL9 837 aa8.12□□□□□ -1.11
PRPF40A-210ENST00000489741 ANGEL2Q5VTE6 544 aaKnown RBP8.12□□□□□ -1.11
PRPF40A-210ENST00000489741 DTHD1Q6ZMT9 781 aa8.12□□□□□ -1.11
PRPF40A-210ENST00000489741 FAM20CQ8IXL6 584 aa8.12□□□□□ -1.11
PRPF40A-210ENST00000489741 ZBED3Q96IU2 234 aaPredicted RBP8.12□□□□□ -1.11
PRPF40A-210ENST00000489741 CORO1BQ9BR76 489 aa8.12□□□□□ -1.11
PRPF40A-210ENST00000489741 STK31Q9BXU1 1019 aa8.12□□□□□ -1.11
PRPF40A-210ENST00000489741 COA1Q9GZY4 146 aa8.12□□□□□ -1.11
PRPF40A-210ENST00000489741 C7orf69Q9H7B7 122 aa8.12□□□□□ -1.11
PRPF40A-210ENST00000489741 SUGCTQ9HAC7 445 aa8.12□□□□□ -1.11
PRPF40A-210ENST00000489741 LEMD3Q9Y2U8 911 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms