RNA–Protein interactions for RNA: ENST00000489212.2

LIME1-207, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 559 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-207ENST00000489212 RTP1P59025 263 aa24.62■■□□□ 1.53
LIME1-207ENST00000489212 TMEM63BQ5T3F8 832 aa24.62■■□□□ 1.53
LIME1-207ENST00000489212 RNF20Q5VTR2 975 aa24.62■■□□□ 1.53
LIME1-207ENST00000489212 NUP133Q8WUM0 1156 aa24.62■■□□□ 1.53
LIME1-207ENST00000489212 RBM27Q9P2N5 1060 aaKnown RBP24.62■■□□□ 1.53
LIME1-207ENST00000489212 LOC102724159A0A0B4J2E5 919 aa24.61■■□□□ 1.53
LIME1-207ENST00000489212 OPLAHO14841 1288 aa24.61■■□□□ 1.53
LIME1-207ENST00000489212 CTAGE5O15320 804 aa24.61■■□□□ 1.53
LIME1-207ENST00000489212 SMPD1P17405 629 aa24.61■■□□□ 1.53
LIME1-207ENST00000489212 GJA9P57773 515 aa24.61■■□□□ 1.53
LIME1-207ENST00000489212 TNFAIP2Q03169 654 aa24.61■■□□□ 1.53
LIME1-207ENST00000489212 SNX17Q15036 470 aa24.61■■□□□ 1.53
LIME1-207ENST00000489212 PWP2Q15269 919 aaKnown RBP24.61■■□□□ 1.53
LIME1-207ENST00000489212 TMEM87BQ96K49 555 aa24.61■■□□□ 1.53
LIME1-207ENST00000489212 PIGSQ96S52 555 aa24.61■■□□□ 1.53
LIME1-207ENST00000489212 TSEN34Q9BSV6 310 aaKnown RBP24.61■■□□□ 1.53
LIME1-207ENST00000489212 AMNQ9BXJ7 453 aa24.61■■□□□ 1.53
LIME1-207ENST00000489212 VTA1Q9NP79 307 aa24.61■■□□□ 1.53
LIME1-207ENST00000489212 COL20A1Q9P218 1284 aa24.61■■□□□ 1.53
LIME1-207ENST00000489212 GNEQ9Y223 722 aaKnown RBP24.61■■□□□ 1.53
LIME1-207ENST00000489212 MRPL11Q9Y3B7 192 aaKnown RBP24.61■■□□□ 1.53
LIME1-207ENST00000489212 A0A1W2PQ45 241 aaPredicted RBP24.6■■□□□ 1.53
LIME1-207ENST00000489212 A0A1W2PQY0 241 aa24.6■■□□□ 1.53
LIME1-207ENST00000489212 DDAH1O94760 285 aa24.6■■□□□ 1.53
LIME1-207ENST00000489212 C6orf222P0C671 652 aaPredicted RBP24.6■■□□□ 1.53
LIME1-207ENST00000489212 EDNRBP24530 442 aa24.6■■□□□ 1.53
LIME1-207ENST00000489212 CST5P28325 142 aaPredicted RBP24.6■■□□□ 1.53
LIME1-207ENST00000489212 KCNA10Q16322 511 aa24.6■■□□□ 1.53
LIME1-207ENST00000489212 ADCK5Q3MIX3 580 aa24.6■■□□□ 1.53
LIME1-207ENST00000489212 HOMER1Q86YM7 354 aa24.6■■□□□ 1.53
LIME1-207ENST00000489212 DNERQ8NFT8 737 aa24.6■■□□□ 1.53
LIME1-207ENST00000489212 SYTL5Q8TDW5 730 aaPredicted RBP24.6■■□□□ 1.53
LIME1-207ENST00000489212 ATP11BQ9Y2G3 1177 aa24.6■■□□□ 1.53
LIME1-207ENST00000489212 CENPBP07199 599 aaPredicted RBP24.59■■□□□ 1.53
LIME1-207ENST00000489212 LIFRP42702 1097 aa24.59■■□□□ 1.53
LIME1-207ENST00000489212 ACLYP53396 1101 aa24.59■■□□□ 1.53
LIME1-207ENST00000489212 TSGA10IPQ3SY00 556 aa24.59■■□□□ 1.53
LIME1-207ENST00000489212 TRIM60Q495X7 471 aa24.59■■□□□ 1.53
LIME1-207ENST00000489212 ERICH6BQ5W0A0 696 aa24.59■■□□□ 1.53
LIME1-207ENST00000489212 NEK1Q96PY6 1258 aa24.59■■□□□ 1.53
LIME1-207ENST00000489212 TAAR1Q96RJ0 339 aa24.59■■□□□ 1.53
LIME1-207ENST00000489212 MAP3K14Q99558 947 aa24.59■■□□□ 1.53
LIME1-207ENST00000489212 MAF1Q9H063 256 aa24.59■■□□□ 1.53
LIME1-207ENST00000489212 NKX3-2P78367 333 aa24.58■■□□□ 1.53
LIME1-207ENST00000489212 C1orf53Q5VUE5 145 aa24.58■■□□□ 1.53
LIME1-207ENST00000489212 IQSEC1Q6DN90 963 aa24.58■■□□□ 1.53
LIME1-207ENST00000489212 NFXL1Q6ZNB6 911 aa24.58■■□□□ 1.53
LIME1-207ENST00000489212 NOL8Q76FK4 1167 aaKnown RBP24.58■■□□□ 1.53
LIME1-207ENST00000489212 MCF2L2Q86YR7 1114 aa24.58■■□□□ 1.53
LIME1-207ENST00000489212 TMTC2Q8N394 836 aa24.58■■□□□ 1.53
LIME1-207ENST00000489212 GDF15Q99988 308 aa24.58■■□□□ 1.53
LIME1-207ENST00000489212 PCDHA1Q9Y5I3 950 aa24.58■■□□□ 1.53
LIME1-207ENST00000489212 MOXD2PA6NHM9 499 aa24.57■■□□□ 1.52
LIME1-207ENST00000489212 CCDC69A6NI79 296 aa24.57■■□□□ 1.52
LIME1-207ENST00000489212 RXRAP19793 462 aa24.57■■□□□ 1.52
LIME1-207ENST00000489212 MAGEA10P43363 369 aaPredicted RBP24.57■■□□□ 1.52
LIME1-207ENST00000489212 BEX3Q00994 111 aa24.57■■□□□ 1.52
LIME1-207ENST00000489212 EXOSC10Q01780 885 aaKnown RBP24.57■■□□□ 1.52
LIME1-207ENST00000489212 TLK2Q86UE8 772 aa24.57■■□□□ 1.52
LIME1-207ENST00000489212 RAB11FIP4Q86YS3 637 aa24.57■■□□□ 1.52
LIME1-207ENST00000489212 TCEANC2Q96MN5 208 aa24.57■■□□□ 1.52
LIME1-207ENST00000489212 SPC25Q9HBM1 224 aa24.57■■□□□ 1.52
LIME1-207ENST00000489212 LAMA3Q16787 3333 aa24.56■■□□□ 1.52
LIME1-207ENST00000489212 RBM47A0AV96 593 aaKnown RBP24.56■■□□□ 1.52
LIME1-207ENST00000489212 ASGR1P07306 291 aa24.56■■□□□ 1.52
LIME1-207ENST00000489212 PDE4DQ08499 809 aa24.56■■□□□ 1.52
LIME1-207ENST00000489212 GNASQ5JWF2 1037 aa24.56■■□□□ 1.52
LIME1-207ENST00000489212 CTCFLQ8NI51 663 aaPredicted RBP24.56■■□□□ 1.52
LIME1-207ENST00000489212 PIBF1Q8WXW3 757 aa24.56■■□□□ 1.52
LIME1-207ENST00000489212 KCNB2Q92953 911 aa24.56■■□□□ 1.52
LIME1-207ENST00000489212 PNMA6FA0A0J9YX94 578 aa24.55■■□□□ 1.52
LIME1-207ENST00000489212 DYNC1LI2O43237 492 aaPredicted RBP24.55■■□□□ 1.52
LIME1-207ENST00000489212 PLEKHA8P1O95397 391 aa24.55■■□□□ 1.52
LIME1-207ENST00000489212 CFBP00751 764 aa24.55■■□□□ 1.52
LIME1-207ENST00000489212 KIF5BP33176 963 aa24.55■■□□□ 1.52
LIME1-207ENST00000489212 HSD17B4P51659 736 aa24.55■■□□□ 1.52
LIME1-207ENST00000489212 GHRHRQ02643 423 aa24.55■■□□□ 1.52
LIME1-207ENST00000489212 SGMS1Q86VZ5 419 aa24.55■■□□□ 1.52
LIME1-207ENST00000489212 PCSK9Q8NBP7 692 aaKnown RBP24.55■■□□□ 1.52
LIME1-207ENST00000489212 SPZ1Q9BXG8 430 aa24.55■■□□□ 1.52
LIME1-207ENST00000489212 WDR11Q9BZH6 1224 aa24.55■■□□□ 1.52
LIME1-207ENST00000489212 TLE2Q04725 743 aa24.54■■□□□ 1.52
LIME1-207ENST00000489212 DUSP28Q4G0W2 176 aa24.54■■□□□ 1.52
LIME1-207ENST00000489212 DHX32Q7L7V1 743 aaKnown RBP24.54■■□□□ 1.52
LIME1-207ENST00000489212 SRBD1Q8N5C6 995 aaKnown RBP24.54■■□□□ 1.52
LIME1-207ENST00000489212 RMDN3Q96TC7 470 aa24.54■■□□□ 1.52
LIME1-207ENST00000489212 STARD7Q9NQZ5 370 aa24.54■■□□□ 1.52
LIME1-207ENST00000489212 SLC12A7Q9Y666 1083 aa24.54■■□□□ 1.52
LIME1-207ENST00000489212 HSPA4P34932 840 aa24.53■■□□□ 1.52
LIME1-207ENST00000489212 KRT32Q14532 448 aa24.53■■□□□ 1.52
LIME1-207ENST00000489212 FSCN1Q16658 493 aaKnown RBP24.53■■□□□ 1.52
LIME1-207ENST00000489212 CMTR1Q8N1G2 835 aaKnown RBP24.53■■□□□ 1.52
LIME1-207ENST00000489212 NSUN6Q8TEA1 469 aaKnown RBP24.53■■□□□ 1.52
LIME1-207ENST00000489212 MPHOSPH6Q99547 160 aaKnown RBP24.53■■□□□ 1.52
LIME1-207ENST00000489212 AP5M1Q9H0R1 490 aa24.53■■□□□ 1.52
LIME1-207ENST00000489212 Q9Y3F1 56 aa24.53■■□□□ 1.52
LIME1-207ENST00000489212 SMARCA1P28370 1054 aa24.52■■□□□ 1.52
LIME1-207ENST00000489212 HOXA13P31271 388 aaPredicted RBP24.52■■□□□ 1.52
LIME1-207ENST00000489212 BMP8BP34820 402 aa24.52■■□□□ 1.52
LIME1-207ENST00000489212 FXR1P51114 621 aaKnown RBP eCLIP24.52■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms