RNA–Protein interactions for RNA: ENST00000488494.5

ITGB1-215, Transcript of integrin subunit beta 1, humanhuman

TSL 4

Gene ITGB1, Length 540 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB1-215ENST00000488494 SMPD1P17405 629 aa20.66■□□□□ 0.9
ITGB1-215ENST00000488494 MDM2Q00987 491 aaPredicted RBP20.66■□□□□ 0.9
ITGB1-215ENST00000488494 PWP2Q15269 919 aaKnown RBP20.66■□□□□ 0.9
ITGB1-215ENST00000488494 C1orf53Q5VUE5 145 aa20.66■□□□□ 0.9
ITGB1-215ENST00000488494 TAPT1Q6NXT6 567 aa20.66■□□□□ 0.9
ITGB1-215ENST00000488494 CASC1Q6TDU7 716 aa20.66■□□□□ 0.9
ITGB1-215ENST00000488494 GPHNQ9NQX3 736 aaPredicted RBP20.66■□□□□ 0.9
ITGB1-215ENST00000488494 STARD7Q9NQZ5 370 aa20.66■□□□□ 0.9
ITGB1-215ENST00000488494 PRKAG2Q9UGJ0 569 aa20.66■□□□□ 0.9
ITGB1-215ENST00000488494 MYH6P13533 1939 aa20.66■□□□□ 0.9
ITGB1-215ENST00000488494 LAMA3Q16787 3333 aa20.66■□□□□ 0.9
ITGB1-215ENST00000488494 CTAGE5O15320 804 aa20.65■□□□□ 0.9
ITGB1-215ENST00000488494 PQBP1O60828 265 aaKnown RBP20.65■□□□□ 0.9
ITGB1-215ENST00000488494 BMP8BP34820 402 aa20.65■□□□□ 0.9
ITGB1-215ENST00000488494 BEX3Q00994 111 aa20.65■□□□□ 0.9
ITGB1-215ENST00000488494 PDE4DQ08499 809 aa20.65■□□□□ 0.9
ITGB1-215ENST00000488494 TROAPQ12815 778 aa20.65■□□□□ 0.9
ITGB1-215ENST00000488494 COL9A3Q14050 684 aaPredicted RBP20.65■□□□□ 0.9
ITGB1-215ENST00000488494 SLC35G1Q2M3R5 365 aa20.65■□□□□ 0.9
ITGB1-215ENST00000488494 GNASQ5JWF2 1037 aa20.65■□□□□ 0.9
ITGB1-215ENST00000488494 CATIPQ7Z7H3 387 aa20.65■□□□□ 0.9
ITGB1-215ENST00000488494 PCSK9Q8NBP7 692 aaKnown RBP20.65■□□□□ 0.9
ITGB1-215ENST00000488494 RGS22Q8NE09 1264 aa20.65■□□□□ 0.9
ITGB1-215ENST00000488494 IGDCC4Q8TDY8 1250 aa20.65■□□□□ 0.9
ITGB1-215ENST00000488494 NUP133Q8WUM0 1156 aa20.65■□□□□ 0.9
ITGB1-215ENST00000488494 UBE2OQ9C0C9 1292 aaKnown RBP20.65■□□□□ 0.9
ITGB1-215ENST00000488494 LY9Q9HBG7 655 aa20.65■□□□□ 0.9
ITGB1-215ENST00000488494 PDLIM7Q9NR12 457 aa20.65■□□□□ 0.9
ITGB1-215ENST00000488494 GNEQ9Y223 722 aaKnown RBP20.65■□□□□ 0.9
ITGB1-215ENST00000488494 PPP1R11O60927 126 aaPredicted RBP20.64■□□□□ 0.89
ITGB1-215ENST00000488494 ASGR1P07306 291 aa20.64■□□□□ 0.89
ITGB1-215ENST00000488494 EDNRBP24530 442 aa20.64■□□□□ 0.89
ITGB1-215ENST00000488494 TLE2Q04725 743 aa20.64■□□□□ 0.89
ITGB1-215ENST00000488494 NECTIN1Q15223 517 aa20.64■□□□□ 0.89
ITGB1-215ENST00000488494 TMEM63BQ5T3F8 832 aa20.64■□□□□ 0.89
ITGB1-215ENST00000488494 HOMER1Q86YM7 354 aa20.64■□□□□ 0.89
ITGB1-215ENST00000488494 DNERQ8NFT8 737 aa20.64■□□□□ 0.89
ITGB1-215ENST00000488494 MTMR8Q96EF0 704 aa20.64■□□□□ 0.89
ITGB1-215ENST00000488494 MPHOSPH6Q99547 160 aaKnown RBP20.64■□□□□ 0.89
ITGB1-215ENST00000488494 LBHD1Q9BQE6 289 aaPredicted RBP20.64■□□□□ 0.89
ITGB1-215ENST00000488494 MYL10Q9BUA6 226 aa20.64■□□□□ 0.89
ITGB1-215ENST00000488494 AMNQ9BXJ7 453 aa20.64■□□□□ 0.89
ITGB1-215ENST00000488494 MRPL11Q9Y3B7 192 aaKnown RBP20.64■□□□□ 0.89
ITGB1-215ENST00000488494 ZBTB5O15062 677 aa20.63■□□□□ 0.89
ITGB1-215ENST00000488494 MCM5P33992 734 aa20.63■□□□□ 0.89
ITGB1-215ENST00000488494 FSCN1Q16658 493 aaKnown RBP20.63■□□□□ 0.89
ITGB1-215ENST00000488494 IQSEC1Q6DN90 963 aa20.63■□□□□ 0.89
ITGB1-215ENST00000488494 MCF2L2Q86YR7 1114 aa20.63■□□□□ 0.89
ITGB1-215ENST00000488494 ZNF654Q8IZM8 581 aa20.63■□□□□ 0.89
ITGB1-215ENST00000488494 SYTL5Q8TDW5 730 aaPredicted RBP20.63■□□□□ 0.89
ITGB1-215ENST00000488494 TBC1D5Q92609 795 aa20.63■□□□□ 0.89
ITGB1-215ENST00000488494 GLT1D1Q96MS3 346 aa20.63■□□□□ 0.89
ITGB1-215ENST00000488494 AP5M1Q9H0R1 490 aa20.63■□□□□ 0.89
ITGB1-215ENST00000488494 COL20A1Q9P218 1284 aa20.63■□□□□ 0.89
ITGB1-215ENST00000488494 SH2B2O14492 632 aaPredicted RBP20.62■□□□□ 0.89
ITGB1-215ENST00000488494 DYNC1LI2O43237 492 aaPredicted RBP20.62■□□□□ 0.89
ITGB1-215ENST00000488494 DDAH1O94760 285 aa20.62■□□□□ 0.89
ITGB1-215ENST00000488494 NKX3-2P78367 333 aa20.62■□□□□ 0.89
ITGB1-215ENST00000488494 NFXL1Q6ZNB6 911 aa20.62■□□□□ 0.89
ITGB1-215ENST00000488494 SH3RF1Q7Z6J0 888 aa20.62■□□□□ 0.89
ITGB1-215ENST00000488494 PIGSQ96S52 555 aa20.62■□□□□ 0.89
ITGB1-215ENST00000488494 OPLAHO14841 1288 aa20.61■□□□□ 0.89
ITGB1-215ENST00000488494 CYTH3O43739 400 aa20.61■□□□□ 0.89
ITGB1-215ENST00000488494 CLTBP09497 229 aa20.61■□□□□ 0.89
ITGB1-215ENST00000488494 DUSP28Q4G0W2 176 aa20.61■□□□□ 0.89
ITGB1-215ENST00000488494 RNF20Q5VTR2 975 aa20.61■□□□□ 0.89
ITGB1-215ENST00000488494 TDHQ8IZJ6 230 aa20.61■□□□□ 0.89
ITGB1-215ENST00000488494 TMEM87BQ96K49 555 aa20.61■□□□□ 0.89
ITGB1-215ENST00000488494 MTA3Q9BTC8 594 aa20.61■□□□□ 0.89
ITGB1-215ENST00000488494 WDR11Q9BZH6 1224 aa20.61■□□□□ 0.89
ITGB1-215ENST00000488494 MAF1Q9H063 256 aa20.61■□□□□ 0.89
ITGB1-215ENST00000488494 RIOX1Q9H6W3 641 aa20.61■□□□□ 0.89
ITGB1-215ENST00000488494 PCDHA1Q9Y5I3 950 aa20.61■□□□□ 0.89
ITGB1-215ENST00000488494 ELP1O95163 1332 aa20.6■□□□□ 0.89
ITGB1-215ENST00000488494 SZT2Q5T011 3432 aa20.6■□□□□ 0.89
ITGB1-215ENST00000488494 A0A0U1RQG5 324 aaPredicted RBP20.6■□□□□ 0.89
ITGB1-215ENST00000488494 TRIM43BA6NCK2 446 aa20.6■□□□□ 0.89
ITGB1-215ENST00000488494 CFBP00751 764 aa20.6■□□□□ 0.89
ITGB1-215ENST00000488494 PPP2R5BQ15173 497 aa20.6■□□□□ 0.89
ITGB1-215ENST00000488494 CXCL17Q6UXB2 119 aa20.6■□□□□ 0.89
ITGB1-215ENST00000488494 ANKRD33Q7Z3H0 272 aa20.6■□□□□ 0.89
ITGB1-215ENST00000488494 CTCFLQ8NI51 663 aaPredicted RBP20.6■□□□□ 0.89
ITGB1-215ENST00000488494 VTI1AQ96AJ9 217 aa20.6■□□□□ 0.89
ITGB1-215ENST00000488494 TRIM43Q96BQ3 446 aaPredicted RBP20.6■□□□□ 0.89
ITGB1-215ENST00000488494 TAAR1Q96RJ0 339 aa20.6■□□□□ 0.89
ITGB1-215ENST00000488494 LRRC2Q9BYS8 371 aa20.6■□□□□ 0.89
ITGB1-215ENST00000488494 RBM47A0AV96 593 aaKnown RBP20.59■□□□□ 0.89
ITGB1-215ENST00000488494 CCDC69A6NI79 296 aa20.59■□□□□ 0.89
ITGB1-215ENST00000488494 B4DLN1 442 aa20.59■□□□□ 0.89
ITGB1-215ENST00000488494 SOX1O00570 391 aaPredicted RBP20.59■□□□□ 0.89
ITGB1-215ENST00000488494 HSD17B4P51659 736 aa20.59■□□□□ 0.89
ITGB1-215ENST00000488494 MRPL12P52815 198 aaKnown RBP20.59■□□□□ 0.89
ITGB1-215ENST00000488494 NSUN6Q8TEA1 469 aaKnown RBP20.59■□□□□ 0.89
ITGB1-215ENST00000488494 SCFD2Q8WU76 684 aa20.59■□□□□ 0.89
ITGB1-215ENST00000488494 PIBF1Q8WXW3 757 aa20.59■□□□□ 0.89
ITGB1-215ENST00000488494 RMDN3Q96TC7 470 aa20.59■□□□□ 0.89
ITGB1-215ENST00000488494 Q9Y3F1 56 aa20.59■□□□□ 0.89
ITGB1-215ENST00000488494 LAMA2P24043 3122 aaKnown RBP20.59■□□□□ 0.89
ITGB1-215ENST00000488494 MROH7Q68CQ1 1323 aa20.58■□□□□ 0.89
ITGB1-215ENST00000488494 DCDC2CA8MYV0 355 aa20.58■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms