RNA–Protein interactions for RNA: ENST00000488320.1

COL17A1-207, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 626 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-207ENST00000488320 FAM50BQ9Y247 325 aa11.08□□□□□ -0.64
COL17A1-207ENST00000488320 EXOC6BQ9Y2D4 811 aa11.08□□□□□ -0.64
COL17A1-207ENST00000488320 DDX49Q9Y6V7 483 aaKnown RBP11.08□□□□□ -0.64
COL17A1-207ENST00000488320 TRIP12Q14669 1992 aaPredicted RBP11.08□□□□□ -0.64
COL17A1-207ENST00000488320 MYH4Q9Y623 1939 aa11.07□□□□□ -0.64
COL17A1-207ENST00000488320 POTEB3A0JP26 581 aa11.07□□□□□ -0.64
COL17A1-207ENST00000488320 MINDY4BA8MYZ0 360 aa11.07□□□□□ -0.64
COL17A1-207ENST00000488320 TMEM232C9JQI7 657 aa11.07□□□□□ -0.64
COL17A1-207ENST00000488320 BMP3P12645 472 aa11.07□□□□□ -0.64
COL17A1-207ENST00000488320 ADD2P35612 726 aa11.07□□□□□ -0.64
COL17A1-207ENST00000488320 WDR5P61964 334 aaKnown RBP11.07□□□□□ -0.64
COL17A1-207ENST00000488320 PURAQ00577 322 aaKnown RBP11.07□□□□□ -0.64
COL17A1-207ENST00000488320 DUSP28Q4G0W2 176 aa11.07□□□□□ -0.64
COL17A1-207ENST00000488320 POTEBQ6S5H4 581 aa11.07□□□□□ -0.64
COL17A1-207ENST00000488320 ZNF444Q8N0Y2 327 aaPredicted RBP11.07□□□□□ -0.64
COL17A1-207ENST00000488320 CHMP4CQ96CF2 233 aa11.07□□□□□ -0.64
COL17A1-207ENST00000488320 RAD9AQ99638 391 aa11.07□□□□□ -0.64
COL17A1-207ENST00000488320 WDR11Q9BZH6 1224 aa11.07□□□□□ -0.64
COL17A1-207ENST00000488320 UPF3BQ9BZI7 483 aaKnown RBP11.07□□□□□ -0.64
COL17A1-207ENST00000488320 VTA1Q9NP79 307 aa11.07□□□□□ -0.64
COL17A1-207ENST00000488320 BRWD1Q9NSI6 2320 aa11.07□□□□□ -0.64
COL17A1-207ENST00000488320 TET1Q8NFU7 2136 aa11.06□□□□□ -0.64
COL17A1-207ENST00000488320 H3BQ06 376 aaPredicted RBP11.06□□□□□ -0.64
COL17A1-207ENST00000488320 ST18O60284 1047 aa11.06□□□□□ -0.64
COL17A1-207ENST00000488320 IFIT2P09913 472 aaKnown RBP11.06□□□□□ -0.64
COL17A1-207ENST00000488320 ERVK-21P61565 698 aa11.06□□□□□ -0.64
COL17A1-207ENST00000488320 TKFCQ3LXA3 575 aa11.06□□□□□ -0.64
COL17A1-207ENST00000488320 SLFN13Q68D06 897 aa11.06□□□□□ -0.64
COL17A1-207ENST00000488320 FAM117BQ6P1L5 589 aa11.06□□□□□ -0.64
COL17A1-207ENST00000488320 HFE2Q6ZVN8 426 aa11.06□□□□□ -0.64
COL17A1-207ENST00000488320 CCDC155Q8N6L0 562 aa11.06□□□□□ -0.64
COL17A1-207ENST00000488320 CHURC1Q8WUH1 139 aa11.06□□□□□ -0.64
COL17A1-207ENST00000488320 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.06□□□□□ -0.64
COL17A1-207ENST00000488320 PAG1Q9NWQ8 432 aa11.06□□□□□ -0.64
COL17A1-207ENST00000488320 ARPP21Q9UBL0 812 aaPredicted RBP11.06□□□□□ -0.64
COL17A1-207ENST00000488320 CTNNA3Q9UI47 895 aa11.06□□□□□ -0.64
COL17A1-207ENST00000488320 RASA1P20936 1047 aa11.05□□□□□ -0.64
COL17A1-207ENST00000488320 STAT2P52630 851 aa11.05□□□□□ -0.64
COL17A1-207ENST00000488320 DEFB103AP81534 67 aa11.05□□□□□ -0.64
COL17A1-207ENST00000488320 PTPN11Q06124 597 aaPredicted RBP11.05□□□□□ -0.64
COL17A1-207ENST00000488320 PTPROQ16827 1216 aa11.05□□□□□ -0.64
COL17A1-207ENST00000488320 LRRFIP1Q32MZ4 808 aaKnown RBP11.05□□□□□ -0.64
COL17A1-207ENST00000488320 ZKSCAN2Q63HK3 967 aa11.05□□□□□ -0.64
COL17A1-207ENST00000488320 NFRKBQ6P4R8 1299 aa11.05□□□□□ -0.64
COL17A1-207ENST00000488320 NSMFQ6X4W1 530 aa11.05□□□□□ -0.64
COL17A1-207ENST00000488320 LRRC47Q8N1G4 583 aaKnown RBP11.05□□□□□ -0.64
COL17A1-207ENST00000488320 CLASRPQ8N2M8 674 aaKnown RBP11.05□□□□□ -0.64
COL17A1-207ENST00000488320 FBXO22Q8NEZ5 403 aa11.05□□□□□ -0.64
COL17A1-207ENST00000488320 ANKS1AQ92625 1134 aa11.05□□□□□ -0.64
COL17A1-207ENST00000488320 MKL1Q969V6 931 aa11.05□□□□□ -0.64
COL17A1-207ENST00000488320 PHOX2BQ99453 314 aa11.05□□□□□ -0.64
COL17A1-207ENST00000488320 BOLA2Q9H3K6 86 aa11.05□□□□□ -0.64
COL17A1-207ENST00000488320 PTPRSQ13332 1948 aa11.05□□□□□ -0.64
COL17A1-207ENST00000488320 RAD50Q92878 1312 aa11.05□□□□□ -0.64
COL17A1-207ENST00000488320 WDFY4Q6ZS81 3184 aa11.04□□□□□ -0.64
COL17A1-207ENST00000488320 LINC01553A4QN01 128 aa11.04□□□□□ -0.64
COL17A1-207ENST00000488320 KPNA6O60684 536 aa11.04□□□□□ -0.64
COL17A1-207ENST00000488320 GJB5O95377 273 aa11.04□□□□□ -0.64
COL17A1-207ENST00000488320 TTLL1O95922 423 aa11.04□□□□□ -0.64
COL17A1-207ENST00000488320 PTGISQ16647 500 aa11.04□□□□□ -0.64
COL17A1-207ENST00000488320 HSP90AB4PQ58FF6 505 aa11.04□□□□□ -0.64
COL17A1-207ENST00000488320 ZSCAN25Q6NSZ9 544 aa11.04□□□□□ -0.64
COL17A1-207ENST00000488320 CNKSR3Q6P9H4 555 aa11.04□□□□□ -0.64
COL17A1-207ENST00000488320 FAM160B2Q86V87 743 aa11.04□□□□□ -0.64
COL17A1-207ENST00000488320 RPAP2Q8IXW5 612 aaPredicted RBP11.04□□□□□ -0.64
COL17A1-207ENST00000488320 RHPN1Q8TCX5 695 aa11.04□□□□□ -0.64
COL17A1-207ENST00000488320 AFAP1L1Q8TED9 768 aa11.04□□□□□ -0.64
COL17A1-207ENST00000488320 STAG1Q8WVM7 1258 aa11.04□□□□□ -0.64
COL17A1-207ENST00000488320 ZNF287Q9HBT7 754 aa11.04□□□□□ -0.64
COL17A1-207ENST00000488320 CYP39A1Q9NYL5 469 aa11.04□□□□□ -0.64
COL17A1-207ENST00000488320 ADD3Q9UEY8 706 aaKnown RBP11.04□□□□□ -0.64
COL17A1-207ENST00000488320 PRKAG3Q9UGI9 489 aa11.04□□□□□ -0.64
COL17A1-207ENST00000488320 PTPN5P54829 565 aa11.03□□□□□ -0.64
COL17A1-207ENST00000488320 SNAP25P60880 206 aa11.03□□□□□ -0.64
COL17A1-207ENST00000488320 IKBKEQ14164 716 aa11.03□□□□□ -0.64
COL17A1-207ENST00000488320 MUM1L1Q5H9M0 696 aa11.03□□□□□ -0.64
COL17A1-207ENST00000488320 ITPRIPQ8IWB1 547 aa11.03□□□□□ -0.64
COL17A1-207ENST00000488320 FTSJ3Q8IY81 847 aaKnown RBP11.03□□□□□ -0.64
COL17A1-207ENST00000488320 GMCL1P1Q8NEA9 526 aa11.03□□□□□ -0.64
COL17A1-207ENST00000488320 CAGE1Q8TC20 777 aa11.03□□□□□ -0.64
COL17A1-207ENST00000488320 NEK9Q8TD19 979 aa11.03□□□□□ -0.64
COL17A1-207ENST00000488320 MRPL38Q96DV4 380 aaKnown RBP11.03□□□□□ -0.64
COL17A1-207ENST00000488320 CEP95Q96GE4 821 aa11.03□□□□□ -0.64
COL17A1-207ENST00000488320 PURBQ96QR8 312 aaKnown RBP11.03□□□□□ -0.64
COL17A1-207ENST00000488320 C17orf80Q9BSJ5 609 aa11.03□□□□□ -0.64
COL17A1-207ENST00000488320 U3KPZ7 1027 aaPredicted RBP11.03□□□□□ -0.64
COL17A1-207ENST00000488320 TANC1Q9C0D5 1861 aa11.03□□□□□ -0.64
COL17A1-207ENST00000488320 ZBED9Q6R2W3 1325 aa11.03□□□□□ -0.64
COL17A1-207ENST00000488320 SIP14410 1827 aa11.02□□□□□ -0.64
COL17A1-207ENST00000488320 GREB1LQ9C091 1923 aaPredicted RBP11.02□□□□□ -0.65
COL17A1-207ENST00000488320 ABHD14A-ACY1A0A1B0GW23 586 aa11.02□□□□□ -0.65
COL17A1-207ENST00000488320 EFCAB14O75071 495 aa11.02□□□□□ -0.65
COL17A1-207ENST00000488320 PRDM1O75626 825 aa11.02□□□□□ -0.65
COL17A1-207ENST00000488320 PARNO95453 639 aaKnown RBP11.02□□□□□ -0.65
COL17A1-207ENST00000488320 CHGBP05060 677 aa11.02□□□□□ -0.65
COL17A1-207ENST00000488320 SELPP16109 830 aa11.02□□□□□ -0.65
COL17A1-207ENST00000488320 SLC1A4P43007 532 aa11.02□□□□□ -0.65
COL17A1-207ENST00000488320 ZP2Q05996 745 aa11.02□□□□□ -0.65
COL17A1-207ENST00000488320 UBE3CQ15386 1083 aa11.02□□□□□ -0.65
COL17A1-207ENST00000488320 SBK1Q52WX2 424 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms