RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 LILRA2Q8N149 483 aa7.97□□□□□ -1.13
USP48-209ENST00000487880 SHISA4Q96DD7 197 aa7.97□□□□□ -1.13
USP48-209ENST00000487880 CCDC163A0A0D9SF12 145 aa7.96□□□□□ -1.14
USP48-209ENST00000487880 ESYT3A0FGR9 886 aa7.96□□□□□ -1.14
USP48-209ENST00000487880 WTIPA6NIX2 430 aaPredicted RBP7.96□□□□□ -1.14
USP48-209ENST00000487880 ENPP3O14638 875 aa7.96□□□□□ -1.14
USP48-209ENST00000487880 RAC2P15153 192 aa7.96□□□□□ -1.14
USP48-209ENST00000487880 TRHRP34981 398 aaPredicted RBP7.96□□□□□ -1.14
USP48-209ENST00000487880 LTBRP36941 435 aa7.96□□□□□ -1.14
USP48-209ENST00000487880 AFMP43652 599 aa7.96□□□□□ -1.14
USP48-209ENST00000487880 LAPTM5Q13571 262 aa7.96□□□□□ -1.14
USP48-209ENST00000487880 INF2Q27J81 1249 aa7.96□□□□□ -1.14
USP48-209ENST00000487880 NLRX1Q86UT6 975 aa7.96□□□□□ -1.14
USP48-209ENST00000487880 NLGN2Q8NFZ4 835 aa7.96□□□□□ -1.14
USP48-209ENST00000487880 MYLIPQ8WY64 445 aa7.96□□□□□ -1.14
USP48-209ENST00000487880 ASIC4Q96FT7 647 aa7.96□□□□□ -1.14
USP48-209ENST00000487880 PLCD4Q9BRC7 762 aa7.96□□□□□ -1.14
USP48-209ENST00000487880 C19orf44Q9H6X5 657 aa7.96□□□□□ -1.14
USP48-209ENST00000487880 TMA7Q9Y2S6 64 aaKnown RBP7.96□□□□□ -1.14
USP48-209ENST00000487880 BLACEA4D250 179 aa7.95□□□□□ -1.14
USP48-209ENST00000487880 C7orf72A4D263 438 aa7.95□□□□□ -1.14
USP48-209ENST00000487880 PSPNO60542 156 aa7.95□□□□□ -1.14
USP48-209ENST00000487880 PAPLNO95428 1278 aa7.95□□□□□ -1.14
USP48-209ENST00000487880 CORO7P57737 925 aa7.95□□□□□ -1.14
USP48-209ENST00000487880 SNX17Q15036 470 aa7.95□□□□□ -1.14
USP48-209ENST00000487880 SLC14A2Q15849 920 aa7.95□□□□□ -1.14
USP48-209ENST00000487880 FYB2Q5VWT5 728 aa7.95□□□□□ -1.14
USP48-209ENST00000487880 STYK1Q6J9G0 422 aa7.95□□□□□ -1.14
USP48-209ENST00000487880 GALNT18Q6P9A2 607 aa7.95□□□□□ -1.14
USP48-209ENST00000487880 RSPO2Q6UXX9 243 aaPredicted RBP7.95□□□□□ -1.14
USP48-209ENST00000487880 CPNE8Q86YQ8 564 aa7.95□□□□□ -1.14
USP48-209ENST00000487880 DIO2Q92813 273 aa7.95□□□□□ -1.14
USP48-209ENST00000487880 ACSL6Q9UKU0 697 aa7.95□□□□□ -1.14
USP48-209ENST00000487880 TAF6LQ9Y6J9 622 aa7.95□□□□□ -1.14
USP48-209ENST00000487880 USP53Q70EK8 1073 aa7.94□□□□□ -1.14
USP48-209ENST00000487880 HOMER1Q86YM7 354 aa7.94□□□□□ -1.14
USP48-209ENST00000487880 JAMLQ86YT9 394 aa7.94□□□□□ -1.14
USP48-209ENST00000487880 DCAF4Q8WV16 495 aa7.94□□□□□ -1.14
USP48-209ENST00000487880 IPO9Q96P70 1041 aaKnown RBP7.94□□□□□ -1.14
USP48-209ENST00000487880 GPR27Q9NS67 375 aa7.94□□□□□ -1.14
USP48-209ENST00000487880 IMPACTQ9P2X3 320 aa7.94□□□□□ -1.14
USP48-209ENST00000487880 RBM10P98175 930 aaKnown RBP7.93□□□□□ -1.14
USP48-209ENST00000487880 TRIM61Q5EBN2 209 aa7.93□□□□□ -1.14
USP48-209ENST00000487880 RCBTB1Q8NDN9 531 aa7.93□□□□□ -1.14
USP48-209ENST00000487880 ABHD4Q8TB40 342 aa7.93□□□□□ -1.14
USP48-209ENST00000487880 DPF3Q92784 378 aa7.93□□□□□ -1.14
USP48-209ENST00000487880 KIRREL1Q96J84 757 aa7.93□□□□□ -1.14
USP48-209ENST00000487880 RNF32Q9H0A6 362 aa7.93□□□□□ -1.14
USP48-209ENST00000487880 NCOA5Q9HCD5 579 aaKnown RBP7.93□□□□□ -1.14
USP48-209ENST00000487880 FANCLQ9NW38 375 aa7.93□□□□□ -1.14
USP48-209ENST00000487880 BIN1O00499 593 aa7.92□□□□□ -1.14
USP48-209ENST00000487880 KCNQ2O43526 872 aa7.92□□□□□ -1.14
USP48-209ENST00000487880 PPP1R11O60927 126 aaPredicted RBP7.92□□□□□ -1.14
USP48-209ENST00000487880 MSL3P1P0C860 447 aa7.92□□□□□ -1.14
USP48-209ENST00000487880 LCP1P13796 627 aa7.92□□□□□ -1.14
USP48-209ENST00000487880 GABREP78334 506 aa7.92□□□□□ -1.14
USP48-209ENST00000487880 MVKQ03426 396 aa7.92□□□□□ -1.14
USP48-209ENST00000487880 KIR3DS1Q14943 382 aa7.92□□□□□ -1.14
USP48-209ENST00000487880 SDE2Q6IQ49 451 aa7.92□□□□□ -1.14
USP48-209ENST00000487880 MAMDC2Q7Z304 686 aaPredicted RBP7.92□□□□□ -1.14
USP48-209ENST00000487880 Q8N1Y9 231 aa7.92□□□□□ -1.14
USP48-209ENST00000487880 SYNPOQ8N3V7 929 aa7.92□□□□□ -1.14
USP48-209ENST00000487880 APPBP2Q92624 585 aa7.92□□□□□ -1.14
USP48-209ENST00000487880 PTPRN2Q92932 1015 aa7.92□□□□□ -1.14
USP48-209ENST00000487880 ZFYVE21Q9BQ24 234 aa7.92□□□□□ -1.14
USP48-209ENST00000487880 PHF20Q9BVI0 1012 aa7.92□□□□□ -1.14
USP48-209ENST00000487880 MRPL4Q9BYD3 311 aaKnown RBP7.92□□□□□ -1.14
USP48-209ENST00000487880 CRTAC1Q9NQ79 661 aa7.92□□□□□ -1.14
USP48-209ENST00000487880 GPR160Q9UJ42 338 aa7.92□□□□□ -1.14
USP48-209ENST00000487880 ASXL2Q76L83 1435 aa7.92□□□□□ -1.14
USP48-209ENST00000487880 NPHS1O60500 1241 aa7.91□□□□□ -1.14
USP48-209ENST00000487880 CDC45O75419 566 aa7.91□□□□□ -1.14
USP48-209ENST00000487880 PRKCAP17252 672 aa7.91□□□□□ -1.14
USP48-209ENST00000487880 JUNBP17275 347 aaPredicted RBP7.91□□□□□ -1.14
USP48-209ENST00000487880 KCNT2Q6UVM3 1135 aa7.91□□□□□ -1.14
USP48-209ENST00000487880 C16orf86Q6ZW13 317 aa7.91□□□□□ -1.14
USP48-209ENST00000487880 GSTCDQ8NEC7 633 aa7.91□□□□□ -1.14
USP48-209ENST00000487880 MTA3Q9BTC8 594 aa7.91□□□□□ -1.14
USP48-209ENST00000487880 FBLN5Q9UBX5 448 aa7.91□□□□□ -1.14
USP48-209ENST00000487880 YBX2Q9Y2T7 364 aaKnown RBP7.91□□□□□ -1.14
USP48-209ENST00000487880 PLD2O14939 933 aa7.9□□□□□ -1.14
USP48-209ENST00000487880 PNLIPP16233 465 aa7.9□□□□□ -1.14
USP48-209ENST00000487880 IRAK1P51617 712 aa7.9□□□□□ -1.14
USP48-209ENST00000487880 KIAA0907Q7Z7F0 614 aaPredicted RBP7.9□□□□□ -1.14
USP48-209ENST00000487880 ZSWIM9Q86XI8 627 aa7.9□□□□□ -1.14
USP48-209ENST00000487880 NUP43Q8NFH3 380 aa7.9□□□□□ -1.14
USP48-209ENST00000487880 PDLIM7Q9NR12 457 aa7.9□□□□□ -1.14
USP48-209ENST00000487880 GULP1Q9UBP9 304 aa7.9□□□□□ -1.14
USP48-209ENST00000487880 FBXL7Q9UJT9 491 aa7.9□□□□□ -1.14
USP48-209ENST00000487880 TIMM13Q9Y5L4 95 aaPredicted RBP7.9□□□□□ -1.14
USP48-209ENST00000487880 PPP1R12AO14974 1030 aaPredicted RBP7.89□□□□□ -1.15
USP48-209ENST00000487880 MSCO60682 206 aa7.89□□□□□ -1.15
USP48-209ENST00000487880 GALK1P51570 392 aa7.89□□□□□ -1.15
USP48-209ENST00000487880 GPR85P60893 370 aa7.89□□□□□ -1.15
USP48-209ENST00000487880 RPL11P62913 178 aaKnown RBP7.89□□□□□ -1.15
USP48-209ENST00000487880 TKFCQ3LXA3 575 aa7.89□□□□□ -1.15
USP48-209ENST00000487880 PLEKHG4Q58EX7 1191 aa7.89□□□□□ -1.15
USP48-209ENST00000487880 LBX2Q6XYB7 198 aa7.89□□□□□ -1.15
USP48-209ENST00000487880 NLRP10Q86W26 655 aa7.89□□□□□ -1.15
USP48-209ENST00000487880 PUM2Q8TB72 1066 aaKnown RBP eCLIP7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms