RNA–Protein interactions for RNA: ENST00000485842.5

HPS4-214, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 973 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-214ENST00000485842 DIS3Q9Y2L1 958 aaKnown RBP13.69□□□□□ -0.22
HPS4-214ENST00000485842 SOWAHBA6NEL2 793 aa13.68□□□□□ -0.22
HPS4-214ENST00000485842 CPLX1O14810 134 aa13.68□□□□□ -0.22
HPS4-214ENST00000485842 CCND3P30281 292 aaPredicted RBP13.68□□□□□ -0.22
HPS4-214ENST00000485842 MAP3K21Q5TCX8 1036 aa13.68□□□□□ -0.22
HPS4-214ENST00000485842 PHKBQ93100 1093 aa13.68□□□□□ -0.22
HPS4-214ENST00000485842 TBC1D32Q96NH3 1257 aa13.68□□□□□ -0.22
HPS4-214ENST00000485842 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.68□□□□□ -0.22
HPS4-214ENST00000485842 SLKQ9H2G2 1235 aaPredicted RBP13.68□□□□□ -0.22
HPS4-214ENST00000485842 HMX1Q9NP08 348 aaPredicted RBP13.68□□□□□ -0.22
HPS4-214ENST00000485842 DDX49Q9Y6V7 483 aaKnown RBP13.68□□□□□ -0.22
HPS4-214ENST00000485842 V9GY48 417 aaPredicted RBP13.68□□□□□ -0.22
HPS4-214ENST00000485842 LRRC37A2A6NM11 1700 aa13.67□□□□□ -0.22
HPS4-214ENST00000485842 RPTORQ8N122 1335 aa13.67□□□□□ -0.22
HPS4-214ENST00000485842 OPLAHO14841 1288 aa13.67□□□□□ -0.22
HPS4-214ENST00000485842 CYBAP13498 195 aa13.67□□□□□ -0.22
HPS4-214ENST00000485842 CNGA1P29973 690 aa13.67□□□□□ -0.22
HPS4-214ENST00000485842 HOXA13P31271 388 aaPredicted RBP13.67□□□□□ -0.22
HPS4-214ENST00000485842 AKAP17AQ02040 695 aaKnown RBP13.67□□□□□ -0.22
HPS4-214ENST00000485842 RABEP1Q15276 862 aa13.67□□□□□ -0.22
HPS4-214ENST00000485842 PRAMEF19Q5SWL8 479 aa13.67□□□□□ -0.22
HPS4-214ENST00000485842 WWC2Q6AWC2 1192 aa13.67□□□□□ -0.22
HPS4-214ENST00000485842 ARMCX2Q7L311 632 aa13.67□□□□□ -0.22
HPS4-214ENST00000485842 ZNF467Q7Z7K2 595 aaPredicted RBP13.67□□□□□ -0.22
HPS4-214ENST00000485842 SLC26A6Q9BXS9 759 aa13.67□□□□□ -0.22
HPS4-214ENST00000485842 ADD3Q9UEY8 706 aaKnown RBP13.67□□□□□ -0.22
HPS4-214ENST00000485842 ZHX1Q9UKY1 873 aaPredicted RBP13.67□□□□□ -0.22
HPS4-214ENST00000485842 CNPY2Q9Y2B0 182 aa13.67□□□□□ -0.22
HPS4-214ENST00000485842 ASTN1O14525 1302 aa13.66□□□□□ -0.22
HPS4-214ENST00000485842 SYNGAP1Q96PV0 1343 aa13.66□□□□□ -0.22
HPS4-214ENST00000485842 POTEFA5A3E0 1075 aa13.66□□□□□ -0.22
HPS4-214ENST00000485842 ASB14A6NK59 587 aa13.66□□□□□ -0.22
HPS4-214ENST00000485842 PFKFB2O60825 505 aa13.66□□□□□ -0.22
HPS4-214ENST00000485842 LARGE1O95461 756 aa13.66□□□□□ -0.22
HPS4-214ENST00000485842 IGHA2P01877 340 aa13.66□□□□□ -0.22
HPS4-214ENST00000485842 IFNAR1P17181 557 aa13.66□□□□□ -0.22
HPS4-214ENST00000485842 ALDH5A1P51649 535 aaPredicted RBP13.66□□□□□ -0.22
HPS4-214ENST00000485842 NAPAP54920 295 aa13.66□□□□□ -0.22
HPS4-214ENST00000485842 SCRN1Q12765 414 aa13.66□□□□□ -0.22
HPS4-214ENST00000485842 NTRK3Q16288 839 aa13.66□□□□□ -0.22
HPS4-214ENST00000485842 CPLX2Q6PUV4 134 aaKnown RBP13.66□□□□□ -0.22
HPS4-214ENST00000485842 MAMDC4Q6UXC1 1216 aa13.66□□□□□ -0.22
HPS4-214ENST00000485842 RGS22Q8NE09 1264 aa13.66□□□□□ -0.22
HPS4-214ENST00000485842 TRPV1Q8NER1 839 aa13.66□□□□□ -0.22
HPS4-214ENST00000485842 SYTL5Q8TDW5 730 aaPredicted RBP13.66□□□□□ -0.22
HPS4-214ENST00000485842 DEFB118Q96PH6 123 aa13.66□□□□□ -0.22
HPS4-214ENST00000485842 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.66□□□□□ -0.22
HPS4-214ENST00000485842 COL20A1Q9P218 1284 aa13.66□□□□□ -0.22
HPS4-214ENST00000485842 KIAA0100Q14667 2235 aaKnown RBP13.66□□□□□ -0.22
HPS4-214ENST00000485842 FRMPD3Q5JV73 1810 aa13.65□□□□□ -0.22
HPS4-214ENST00000485842 GCOM1H8Y6P7 765 aaPredicted RBP13.65□□□□□ -0.22
HPS4-214ENST00000485842 PRPF3O43395 683 aaKnown RBP13.65□□□□□ -0.22
HPS4-214ENST00000485842 SNAI1O95863 264 aaPredicted RBP13.65□□□□□ -0.22
HPS4-214ENST00000485842 POLR2MP0CAP2 368 aa13.65□□□□□ -0.22
HPS4-214ENST00000485842 HSD17B4P51659 736 aa13.65□□□□□ -0.22
HPS4-214ENST00000485842 ME3Q16798 604 aa13.65□□□□□ -0.22
HPS4-214ENST00000485842 FCHSD1Q86WN1 690 aa13.65□□□□□ -0.22
HPS4-214ENST00000485842 TRIM22Q8IYM9 498 aa13.65□□□□□ -0.22
HPS4-214ENST00000485842 MSL3Q8N5Y2 521 aaKnown RBP13.65□□□□□ -0.22
HPS4-214ENST00000485842 NECAB1Q8N987 351 aa13.65□□□□□ -0.22
HPS4-214ENST00000485842 U2AF1L4Q8WU68 220 aaKnown RBP13.65□□□□□ -0.22
HPS4-214ENST00000485842 CUL5Q93034 780 aa13.65□□□□□ -0.22
HPS4-214ENST00000485842 TAAR1Q96RJ0 339 aa13.65□□□□□ -0.22
HPS4-214ENST00000485842 RNF26Q9BY78 433 aaPredicted RBP13.65□□□□□ -0.22
HPS4-214ENST00000485842 PAK6Q9NQU5 681 aaPredicted RBP13.65□□□□□ -0.22
HPS4-214ENST00000485842 RBM27Q9P2N5 1060 aaKnown RBP13.65□□□□□ -0.22
HPS4-214ENST00000485842 hCG_1984214I3L0E3 225 aa13.64□□□□□ -0.23
HPS4-214ENST00000485842 STXBP3O00186 592 aa13.64□□□□□ -0.23
HPS4-214ENST00000485842 DTNBO60941 627 aa13.64□□□□□ -0.23
HPS4-214ENST00000485842 GJB1P08034 283 aa13.64□□□□□ -0.23
HPS4-214ENST00000485842 SCG2P13521 617 aa13.64□□□□□ -0.23
HPS4-214ENST00000485842 EIF2AK2P19525 551 aaKnown RBP13.64□□□□□ -0.23
HPS4-214ENST00000485842 PDE4DQ08499 809 aa13.64□□□□□ -0.23
HPS4-214ENST00000485842 SSRP1Q08945 709 aaKnown RBP13.64□□□□□ -0.23
HPS4-214ENST00000485842 PFKFB3Q16875 520 aaPredicted RBP13.64□□□□□ -0.23
HPS4-214ENST00000485842 ARHGEF16Q5VV41 709 aa13.64□□□□□ -0.23
HPS4-214ENST00000485842 ANO1Q5XXA6 986 aa13.64□□□□□ -0.23
HPS4-214ENST00000485842 TYW1BQ6NUM6 668 aa13.64□□□□□ -0.23
HPS4-214ENST00000485842 USP17L6PQ6QN14 398 aa13.64□□□□□ -0.23
HPS4-214ENST00000485842 EEPD1Q7L9B9 569 aa13.64□□□□□ -0.23
HPS4-214ENST00000485842 FBXO16Q8IX29 292 aaPredicted RBP13.64□□□□□ -0.23
HPS4-214ENST00000485842 ZNF713Q8N859 430 aaPredicted RBP13.64□□□□□ -0.23
HPS4-214ENST00000485842 SMARCC2Q8TAQ2 1214 aa13.64□□□□□ -0.23
HPS4-214ENST00000485842 GTF3C6Q969F1 213 aa13.64□□□□□ -0.23
HPS4-214ENST00000485842 MPHOSPH6Q99547 160 aaKnown RBP13.64□□□□□ -0.23
HPS4-214ENST00000485842 MAF1Q9H063 256 aa13.64□□□□□ -0.23
HPS4-214ENST00000485842 B4DLN1 442 aa13.63□□□□□ -0.23
HPS4-214ENST00000485842 ST18O60284 1047 aa13.63□□□□□ -0.23
HPS4-214ENST00000485842 CDKL5O76039 1030 aa13.63□□□□□ -0.23
HPS4-214ENST00000485842 MRPL12P52815 198 aaKnown RBP13.63□□□□□ -0.23
HPS4-214ENST00000485842 GHRHRQ02643 423 aa13.63□□□□□ -0.23
HPS4-214ENST00000485842 ACVR2BQ13705 512 aa13.63□□□□□ -0.23
HPS4-214ENST00000485842 PKN1Q16512 942 aa13.63□□□□□ -0.23
HPS4-214ENST00000485842 UBE2SQ16763 222 aa13.63□□□□□ -0.23
HPS4-214ENST00000485842 PPP1R18Q6NYC8 613 aa13.63□□□□□ -0.23
HPS4-214ENST00000485842 DNERQ8NFT8 737 aa13.63□□□□□ -0.23
HPS4-214ENST00000485842 NSUN6Q8TEA1 469 aaKnown RBP13.63□□□□□ -0.23
HPS4-214ENST00000485842 SHISA4Q96DD7 197 aa13.63□□□□□ -0.23
HPS4-214ENST00000485842 RMDN3Q96TC7 470 aa13.63□□□□□ -0.23
HPS4-214ENST00000485842 ABHD16BQ9H3Z7 469 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms