RNA–Protein interactions for RNA: ENST00000485102.1

HDAC6-227, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-227ENST00000485102 ALDH5A1P51649 535 aaPredicted RBP15.37■□□□□ 0.05
HDAC6-227ENST00000485102 CCL23P55773 120 aa15.37■□□□□ 0.05
HDAC6-227ENST00000485102 MRPS5P82675 430 aaKnown RBP15.37■□□□□ 0.05
HDAC6-227ENST00000485102 CTDSPL2Q05D32 466 aa15.37■□□□□ 0.05
HDAC6-227ENST00000485102 BAATQ14032 418 aaPredicted RBP15.37■□□□□ 0.05
HDAC6-227ENST00000485102 TMEM63BQ5T3F8 832 aa15.37■□□□□ 0.05
HDAC6-227ENST00000485102 NSMFQ6X4W1 530 aa15.37■□□□□ 0.05
HDAC6-227ENST00000485102 EEPD1Q7L9B9 569 aa15.37■□□□□ 0.05
HDAC6-227ENST00000485102 YTHDC1Q96MU7 727 aaKnown RBP15.37■□□□□ 0.05
HDAC6-227ENST00000485102 WDR11Q9BZH6 1224 aa15.37■□□□□ 0.05
HDAC6-227ENST00000485102 MAF1Q9H063 256 aa15.37■□□□□ 0.05
HDAC6-227ENST00000485102 NKX2-4Q9H2Z4 354 aa15.37■□□□□ 0.05
HDAC6-227ENST00000485102 HELLSQ9NRZ9 838 aa15.37■□□□□ 0.05
HDAC6-227ENST00000485102 YBX2Q9Y2T7 364 aaKnown RBP15.37■□□□□ 0.05
HDAC6-227ENST00000485102 PCDHA11Q9Y5I1 949 aa15.37■□□□□ 0.05
HDAC6-227ENST00000485102 SLC4A7Q9Y6M7 1214 aa15.37■□□□□ 0.05
HDAC6-227ENST00000485102 DDX49Q9Y6V7 483 aaKnown RBP15.37■□□□□ 0.05
HDAC6-227ENST00000485102 GBF1Q92538 1859 aa15.37■□□□□ 0.05
HDAC6-227ENST00000485102 NKRFO15226 690 aaKnown RBP eCLIP15.36■□□□□ 0.05
HDAC6-227ENST00000485102 PTGS1P23219 599 aa15.36■□□□□ 0.05
HDAC6-227ENST00000485102 CPT1AP50416 773 aa15.36■□□□□ 0.05
HDAC6-227ENST00000485102 SNAP25P60880 206 aa15.36■□□□□ 0.05
HDAC6-227ENST00000485102 PSMC6P62333 389 aa15.36■□□□□ 0.05
HDAC6-227ENST00000485102 PURAQ00577 322 aaKnown RBP15.36■□□□□ 0.05
HDAC6-227ENST00000485102 SYDE2Q5VT97 1194 aa15.36■□□□□ 0.05
HDAC6-227ENST00000485102 EVI5LQ96CN4 794 aa15.36■□□□□ 0.05
HDAC6-227ENST00000485102 TTC14Q96N46 770 aa15.36■□□□□ 0.05
HDAC6-227ENST00000485102 PURBQ96QR8 312 aaKnown RBP15.36■□□□□ 0.05
HDAC6-227ENST00000485102 BDP1A6H8Y1 2624 aa15.36■□□□□ 0.05
HDAC6-227ENST00000485102 PRRC2BQ5JSZ5 2229 aaKnown RBP15.36■□□□□ 0.05
HDAC6-227ENST00000485102 KPNA6O60684 536 aa15.35■□□□□ 0.05
HDAC6-227ENST00000485102 FGAP02671 866 aa15.35■□□□□ 0.05
HDAC6-227ENST00000485102 PCP11498 1178 aaKnown RBP15.35■□□□□ 0.05
HDAC6-227ENST00000485102 EDNRBP24530 442 aa15.35■□□□□ 0.05
HDAC6-227ENST00000485102 VPS53Q5VIR6 699 aa15.35■□□□□ 0.05
HDAC6-227ENST00000485102 TTBK2Q6IQ55 1244 aa15.35■□□□□ 0.05
HDAC6-227ENST00000485102 RASGRP2Q7LDG7 609 aa15.35■□□□□ 0.05
HDAC6-227ENST00000485102 RGS22Q8NE09 1264 aa15.35■□□□□ 0.05
HDAC6-227ENST00000485102 DNERQ8NFT8 737 aa15.35■□□□□ 0.05
HDAC6-227ENST00000485102 CLEC4DQ8WXI8 215 aa15.35■□□□□ 0.05
HDAC6-227ENST00000485102 TMEM47Q9BQJ4 181 aa15.35■□□□□ 0.05
HDAC6-227ENST00000485102 MTG1Q9BT17 334 aaPredicted RBP15.35■□□□□ 0.05
HDAC6-227ENST00000485102 ZMYM6O95789 1325 aa15.35■□□□□ 0.05
HDAC6-227ENST00000485102 WDR19Q8NEZ3 1342 aa15.35■□□□□ 0.05
HDAC6-227ENST00000485102 A6NJR5 290 aa15.34■□□□□ 0.05
HDAC6-227ENST00000485102 PITPNM1O00562 1244 aa15.34■□□□□ 0.05
HDAC6-227ENST00000485102 NFIBO00712 420 aa15.34■□□□□ 0.05
HDAC6-227ENST00000485102 SNHG28P0DPA3 235 aa15.34■□□□□ 0.05
HDAC6-227ENST00000485102 RFC2P35250 354 aa15.34■□□□□ 0.05
HDAC6-227ENST00000485102 SLC16A2P36021 539 aa15.34■□□□□ 0.05
HDAC6-227ENST00000485102 PTPN11Q06124 597 aaPredicted RBP15.34■□□□□ 0.05
HDAC6-227ENST00000485102 CCDC96Q2M329 555 aa15.34■□□□□ 0.05
HDAC6-227ENST00000485102 BRDTQ58F21 947 aaPredicted RBP15.34■□□□□ 0.05
HDAC6-227ENST00000485102 NFRKBQ6P4R8 1299 aa15.34■□□□□ 0.05
HDAC6-227ENST00000485102 PPM1EQ8WY54 764 aa15.34■□□□□ 0.05
HDAC6-227ENST00000485102 TNKSO95271 1327 aa15.34■□□□□ 0.05
HDAC6-227ENST00000485102 PDHBP11177 359 aa15.33■□□□□ 0.04
HDAC6-227ENST00000485102 ATP2A2P16615 1042 aaKnown RBP15.33■□□□□ 0.04
HDAC6-227ENST00000485102 IGFBP4P22692 258 aa15.33■□□□□ 0.04
HDAC6-227ENST00000485102 NT5C2P49902 561 aa15.33■□□□□ 0.04
HDAC6-227ENST00000485102 PPP2R2DQ66LE6 453 aa15.33■□□□□ 0.04
HDAC6-227ENST00000485102 PHOSPHO2Q8TCD6 241 aa15.33■□□□□ 0.04
HDAC6-227ENST00000485102 SCFD2Q8WU76 684 aa15.33■□□□□ 0.04
HDAC6-227ENST00000485102 CHMP4CQ96CF2 233 aa15.33■□□□□ 0.04
HDAC6-227ENST00000485102 SCLYQ96I15 445 aa15.33■□□□□ 0.04
HDAC6-227ENST00000485102 MPHOSPH6Q99547 160 aaKnown RBP15.33■□□□□ 0.04
HDAC6-227ENST00000485102 TSPYL2Q9H2G4 693 aaPredicted RBP15.33■□□□□ 0.04
HDAC6-227ENST00000485102 TRMT13Q9NUP7 481 aaKnown RBP15.33■□□□□ 0.04
HDAC6-227ENST00000485102 PTPDC1A2A3K4 754 aa15.32■□□□□ 0.04
HDAC6-227ENST00000485102 B4DLN1 442 aa15.32■□□□□ 0.04
HDAC6-227ENST00000485102 CYP2C9P11712 490 aa15.32■□□□□ 0.04
HDAC6-227ENST00000485102 MRPL12P52815 198 aaKnown RBP15.32■□□□□ 0.04
HDAC6-227ENST00000485102 RABGGTBP53611 331 aa15.32■□□□□ 0.04
HDAC6-227ENST00000485102 RPS6P62753 249 aaKnown RBP15.32■□□□□ 0.04
HDAC6-227ENST00000485102 ZNF543Q08ER8 600 aa15.32■□□□□ 0.04
HDAC6-227ENST00000485102 TTLL4Q14679 1199 aa15.32■□□□□ 0.04
HDAC6-227ENST00000485102 NBPF20Q3BBV1 942 aa15.32■□□□□ 0.04
HDAC6-227ENST00000485102 MCMDC2Q4G0Z9 681 aa15.32■□□□□ 0.04
HDAC6-227ENST00000485102 RNF207Q6ZRF8 634 aa15.32■□□□□ 0.04
HDAC6-227ENST00000485102 OR6J1Q8NGC5 347 aa15.32■□□□□ 0.04
HDAC6-227ENST00000485102 ADAMTS19Q8TE59 1207 aa15.32■□□□□ 0.04
HDAC6-227ENST00000485102 GPHNQ9NQX3 736 aaPredicted RBP15.32■□□□□ 0.04
HDAC6-227ENST00000485102 RAD50Q92878 1312 aa15.32■□□□□ 0.04
HDAC6-227ENST00000485102 TET1Q8NFU7 2136 aa15.32■□□□□ 0.04
HDAC6-227ENST00000485102 TRANK1O15050 2925 aa15.32■□□□□ 0.04
HDAC6-227ENST00000485102 HSPD1P10809 573 aaKnown RBP15.31■□□□□ 0.04
HDAC6-227ENST00000485102 ACTN1P12814 892 aa15.31■□□□□ 0.04
HDAC6-227ENST00000485102 PDE1AP54750 535 aa15.31■□□□□ 0.04
HDAC6-227ENST00000485102 PPP2R5BQ15173 497 aa15.31■□□□□ 0.04
HDAC6-227ENST00000485102 CCDC85BQ15834 202 aaPredicted RBP15.31■□□□□ 0.04
HDAC6-227ENST00000485102 TMEM67Q5HYA8 995 aa15.31■□□□□ 0.04
HDAC6-227ENST00000485102 SLC9A7Q96T83 725 aa15.31■□□□□ 0.04
HDAC6-227ENST00000485102 MTMR7Q9Y216 660 aa15.31■□□□□ 0.04
HDAC6-227ENST00000485102 SCN5AQ14524 2016 aa15.31■□□□□ 0.04
HDAC6-227ENST00000485102 XIRP2A4UGR9 3374 aa15.3■□□□□ 0.04
HDAC6-227ENST00000485102 ZBBXA8MT70 800 aa15.3■□□□□ 0.04
HDAC6-227ENST00000485102 MYL3P08590 195 aa15.3■□□□□ 0.04
HDAC6-227ENST00000485102 IQCF3P0C7M6 154 aa15.3■□□□□ 0.04
HDAC6-227ENST00000485102 BMP1P13497 986 aa15.3■□□□□ 0.04
HDAC6-227ENST00000485102 MYOGP15173 224 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms