RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 ADCY3O60266 1144 aa9.1□□□□□ -0.95
USP40-213ENST00000483216 ERVFRD-1P60508 538 aa9.1□□□□□ -0.95
USP40-213ENST00000483216 PRSS53Q2L4Q9 553 aa9.1□□□□□ -0.95
USP40-213ENST00000483216 PDLIM7Q9NR12 457 aa9.1□□□□□ -0.95
USP40-213ENST00000483216 CDK11AQ9UQ88 783 aaPredicted RBP9.1□□□□□ -0.95
USP40-213ENST00000483216 C7orf72A4D263 438 aa9.09□□□□□ -0.95
USP40-213ENST00000483216 MEFVO15553 781 aaPredicted RBP9.09□□□□□ -0.95
USP40-213ENST00000483216 DLX3O60479 287 aa9.09□□□□□ -0.95
USP40-213ENST00000483216 MSL3P1P0C860 447 aa9.09□□□□□ -0.95
USP40-213ENST00000483216 MLANAQ16655 118 aa9.09□□□□□ -0.95
USP40-213ENST00000483216 LONRF2Q1L5Z9 754 aa9.09□□□□□ -0.95
USP40-213ENST00000483216 PRR23BQ6ZRT6 265 aa9.09□□□□□ -0.95
USP40-213ENST00000483216 ZBTB38Q8NAP3 1195 aaPredicted RBP9.09□□□□□ -0.95
USP40-213ENST00000483216 ARNTLO00327 626 aa9.08□□□□□ -0.96
USP40-213ENST00000483216 NPHS1O60500 1241 aa9.08□□□□□ -0.96
USP40-213ENST00000483216 DIAPH1O60610 1272 aaKnown RBP9.08□□□□□ -0.96
USP40-213ENST00000483216 PABPC1P11940 636 aaKnown RBP9.08□□□□□ -0.96
USP40-213ENST00000483216 PDE6BP35913 854 aa9.08□□□□□ -0.96
USP40-213ENST00000483216 RANGAP1P46060 587 aaPredicted RBP9.08□□□□□ -0.96
USP40-213ENST00000483216 KCNAB2Q13303 367 aa9.08□□□□□ -0.96
USP40-213ENST00000483216 MBLAC2Q68D91 279 aa9.08□□□□□ -0.96
USP40-213ENST00000483216 DENND5AQ6IQ26 1287 aa9.08□□□□□ -0.96
USP40-213ENST00000483216 NSMFQ6X4W1 530 aa9.08□□□□□ -0.96
USP40-213ENST00000483216 CCDC103Q8IW40 242 aa9.08□□□□□ -0.96
USP40-213ENST00000483216 PPIL6Q8IXY8 311 aa9.08□□□□□ -0.96
USP40-213ENST00000483216 DNAJC7Q99615 494 aa9.08□□□□□ -0.96
USP40-213ENST00000483216 TNFRSF12AQ9NP84 129 aa9.08□□□□□ -0.96
USP40-213ENST00000483216 TMEFF2Q9UIK5 374 aaPredicted RBP9.08□□□□□ -0.96
USP40-213ENST00000483216 KDM2BQ8NHM5 1336 aa9.07□□□□□ -0.96
USP40-213ENST00000483216 OR14I1A6ND48 311 aa9.07□□□□□ -0.96
USP40-213ENST00000483216 PRODHO43272 600 aa9.07□□□□□ -0.96
USP40-213ENST00000483216 INF2Q27J81 1249 aa9.07□□□□□ -0.96
USP40-213ENST00000483216 ADGRF1Q5T601 910 aa9.07□□□□□ -0.96
USP40-213ENST00000483216 DIO2Q92813 273 aa9.07□□□□□ -0.96
USP40-213ENST00000483216 OSBP2Q969R2 916 aa9.07□□□□□ -0.96
USP40-213ENST00000483216 EPB41L4BQ9H329 900 aa9.07□□□□□ -0.96
USP40-213ENST00000483216 NSUN3Q9H649 340 aaKnown RBP9.07□□□□□ -0.96
USP40-213ENST00000483216 ZNF552Q9H707 407 aaPredicted RBP9.07□□□□□ -0.96
USP40-213ENST00000483216 HRKO00198 91 aa9.06□□□□□ -0.96
USP40-213ENST00000483216 PPP1R11O60927 126 aaPredicted RBP9.06□□□□□ -0.96
USP40-213ENST00000483216 MPOP05164 745 aa9.06□□□□□ -0.96
USP40-213ENST00000483216 LTBRP36941 435 aa9.06□□□□□ -0.96
USP40-213ENST00000483216 BMS1Q14692 1282 aaKnown RBP9.06□□□□□ -0.96
USP40-213ENST00000483216 CCDC144BQ3MJ40 725 aa9.06□□□□□ -0.96
USP40-213ENST00000483216 JMYQ8N9B5 988 aa9.06□□□□□ -0.96
USP40-213ENST00000483216 DIRC2Q96SL1 478 aa9.06□□□□□ -0.96
USP40-213ENST00000483216 ZSWIM4Q9H7M6 989 aa9.06□□□□□ -0.96
USP40-213ENST00000483216 DCP1AQ9NPI6 582 aaPredicted RBP9.06□□□□□ -0.96
USP40-213ENST00000483216 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP9.06□□□□□ -0.96
USP40-213ENST00000483216 NPFFR2Q9Y5X5 522 aa9.06□□□□□ -0.96
USP40-213ENST00000483216 A0A1W2PQJ5 194 aa9.05□□□□□ -0.96
USP40-213ENST00000483216 SRGAP3O43295 1099 aa9.05□□□□□ -0.96
USP40-213ENST00000483216 ZC3H12BQ5HYM0 836 aaKnown RBP9.05□□□□□ -0.96
USP40-213ENST00000483216 YOD1Q5VVQ6 348 aaPredicted RBP9.05□□□□□ -0.96
USP40-213ENST00000483216 OGFOD2Q6N063 350 aa9.05□□□□□ -0.96
USP40-213ENST00000483216 DPH6Q7L8W6 267 aa9.05□□□□□ -0.96
USP40-213ENST00000483216 SCUBE1Q8IWY4 988 aa9.05□□□□□ -0.96
USP40-213ENST00000483216 POU5F2Q8N7G0 328 aa9.05□□□□□ -0.96
USP40-213ENST00000483216 MRFAP1L1Q96HT8 127 aa9.05□□□□□ -0.96
USP40-213ENST00000483216 MTA3Q9BTC8 594 aa9.05□□□□□ -0.96
USP40-213ENST00000483216 GULP1Q9UBP9 304 aa9.05□□□□□ -0.96
USP40-213ENST00000483216 ABLIM1O14639 778 aa9.04□□□□□ -0.96
USP40-213ENST00000483216 PEX10O60683 326 aa9.04□□□□□ -0.96
USP40-213ENST00000483216 FARP2O94887 1054 aaPredicted RBP9.04□□□□□ -0.96
USP40-213ENST00000483216 FAM153BP0C7A2 387 aa9.04□□□□□ -0.96
USP40-213ENST00000483216 TXKP42681 527 aa9.04□□□□□ -0.96
USP40-213ENST00000483216 YBX1P67809 324 aaKnown RBP9.04□□□□□ -0.96
USP40-213ENST00000483216 MESP2Q0VG99 397 aa9.04□□□□□ -0.96
USP40-213ENST00000483216 CBX2Q14781 532 aaPredicted RBP9.04□□□□□ -0.96
USP40-213ENST00000483216 LZTR1Q8N653 840 aa9.04□□□□□ -0.96
USP40-213ENST00000483216 FBXO15Q8NCQ5 510 aaPredicted RBP9.04□□□□□ -0.96
USP40-213ENST00000483216 DPF3Q92784 378 aa9.04□□□□□ -0.96
USP40-213ENST00000483216 RWDD3Q9Y3V2 267 aa9.04□□□□□ -0.96
USP40-213ENST00000483216 TIMM13Q9Y5L4 95 aaPredicted RBP9.04□□□□□ -0.96
USP40-213ENST00000483216 SDHBP21912 280 aa9.03□□□□□ -0.96
USP40-213ENST00000483216 GTF2A2P52657 109 aa9.03□□□□□ -0.96
USP40-213ENST00000483216 TMEM62Q0P6H9 643 aa9.03□□□□□ -0.96
USP40-213ENST00000483216 NR1I3Q14994 352 aa9.03□□□□□ -0.96
USP40-213ENST00000483216 BICRALQ6AI39 1079 aa9.03□□□□□ -0.96
USP40-213ENST00000483216 RSPO2Q6UXX9 243 aaPredicted RBP9.03□□□□□ -0.96
USP40-213ENST00000483216 RCBTB1Q8NDN9 531 aa9.03□□□□□ -0.96
USP40-213ENST00000483216 FAM84AQ96KN4 292 aa9.03□□□□□ -0.96
USP40-213ENST00000483216 CDC6Q99741 560 aa9.03□□□□□ -0.96
USP40-213ENST00000483216 KLHL14Q9P2G3 628 aa9.03□□□□□ -0.96
USP40-213ENST00000483216 TRBV23-1A0A0A0MS06 115 aa9.02□□□□□ -0.97
USP40-213ENST00000483216 MYO1BO43795 1136 aa9.02□□□□□ -0.97
USP40-213ENST00000483216 CYBBP04839 570 aa9.02□□□□□ -0.97
USP40-213ENST00000483216 DBHP09172 617 aa9.02□□□□□ -0.97
USP40-213ENST00000483216 GLI4P10075 376 aa9.02□□□□□ -0.97
USP40-213ENST00000483216 TACR1P25103 407 aa9.02□□□□□ -0.97
USP40-213ENST00000483216 RPL11P62913 178 aaKnown RBP9.02□□□□□ -0.97
USP40-213ENST00000483216 FOXB2Q5VYV0 432 aa9.02□□□□□ -0.97
USP40-213ENST00000483216 PAQR3Q6TCH7 311 aa9.02□□□□□ -0.97
USP40-213ENST00000483216 ZNF605Q86T29 641 aa9.02□□□□□ -0.97
USP40-213ENST00000483216 CABP7Q86V35 215 aa9.02□□□□□ -0.97
USP40-213ENST00000483216 LILRB2Q8N423 598 aa9.02□□□□□ -0.97
USP40-213ENST00000483216 PLEKHO2Q8TD55 490 aa9.02□□□□□ -0.97
USP40-213ENST00000483216 THAP3Q8WTV1 239 aaPredicted RBP9.02□□□□□ -0.97
USP40-213ENST00000483216 DCAF4Q8WV16 495 aa9.02□□□□□ -0.97
USP40-213ENST00000483216 IPO9Q96P70 1041 aaKnown RBP9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms