RNA–Protein interactions for RNA: ENST00000481991.1

USP54-213, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 403 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-213ENST00000481991 PBXIP1Q96AQ6 731 aa9.19□□□□□ -0.94
USP54-213ENST00000481991 PURBQ96QR8 312 aaKnown RBP9.19□□□□□ -0.94
USP54-213ENST00000481991 SLC38A10Q9HBR0 1119 aa9.19□□□□□ -0.94
USP54-213ENST00000481991 A1CFQ9NQ94 594 aaKnown RBP9.19□□□□□ -0.94
USP54-213ENST00000481991 FAM86C1Q9NVL1 165 aa9.19□□□□□ -0.94
USP54-213ENST00000481991 CLDND1Q9NY35 253 aa9.19□□□□□ -0.94
USP54-213ENST00000481991 CTNNA3Q9UI47 895 aa9.19□□□□□ -0.94
USP54-213ENST00000481991 MUTYHQ9UIF7 546 aa9.19□□□□□ -0.94
USP54-213ENST00000481991 Q9Y3F1 56 aa9.19□□□□□ -0.94
USP54-213ENST00000481991 CHD9Q3L8U1 2897 aa9.19□□□□□ -0.94
USP54-213ENST00000481991 LINC01553A4QN01 128 aa9.18□□□□□ -0.94
USP54-213ENST00000481991 GFRA3O60609 400 aa9.18□□□□□ -0.94
USP54-213ENST00000481991 CSPG5O95196 566 aa9.18□□□□□ -0.94
USP54-213ENST00000481991 IFIT2P09913 472 aaKnown RBP9.18□□□□□ -0.94
USP54-213ENST00000481991 BMP3P12645 472 aa9.18□□□□□ -0.94
USP54-213ENST00000481991 ERVK-21P61565 698 aa9.18□□□□□ -0.94
USP54-213ENST00000481991 PURAQ00577 322 aaKnown RBP9.18□□□□□ -0.94
USP54-213ENST00000481991 IKBKEQ14164 716 aa9.18□□□□□ -0.94
USP54-213ENST00000481991 SLFN13Q68D06 897 aa9.18□□□□□ -0.94
USP54-213ENST00000481991 SUGP1Q8IWZ8 645 aaKnown RBP9.18□□□□□ -0.94
USP54-213ENST00000481991 LRRC47Q8N1G4 583 aaKnown RBP9.18□□□□□ -0.94
USP54-213ENST00000481991 FAM133AQ8N9E0 248 aa9.18□□□□□ -0.94
USP54-213ENST00000481991 C17orf80Q9BSJ5 609 aa9.18□□□□□ -0.94
USP54-213ENST00000481991 BOLA2Q9H3K6 86 aa9.18□□□□□ -0.94
USP54-213ENST00000481991 IGFLR1Q9H665 355 aa9.18□□□□□ -0.94
USP54-213ENST00000481991 NYAP2Q9P242 653 aa9.18□□□□□ -0.94
USP54-213ENST00000481991 EXOC6BQ9Y2D4 811 aa9.18□□□□□ -0.94
USP54-213ENST00000481991 REV3LO60673 3130 aa9.17□□□□□ -0.94
USP54-213ENST00000481991 TCRBV5S4A2TA0A5A2 114 aa9.17□□□□□ -0.94
USP54-213ENST00000481991 RBAK-RBAKDNI3L0D1 243 aa9.17□□□□□ -0.94
USP54-213ENST00000481991 PITPNM1O00562 1244 aa9.17□□□□□ -0.94
USP54-213ENST00000481991 APPP05067 770 aa9.17□□□□□ -0.94
USP54-213ENST00000481991 CT47B1P0C2W7 299 aaPredicted RBP9.17□□□□□ -0.94
USP54-213ENST00000481991 TRIM27P14373 513 aa9.17□□□□□ -0.94
USP54-213ENST00000481991 IRS1P35568 1242 aa9.17□□□□□ -0.94
USP54-213ENST00000481991 OAZ1P54368 228 aa9.17□□□□□ -0.94
USP54-213ENST00000481991 PDE4BQ07343 736 aa9.17□□□□□ -0.94
USP54-213ENST00000481991 GPM6BQ13491 265 aa9.17□□□□□ -0.94
USP54-213ENST00000481991 DUSP28Q4G0W2 176 aa9.17□□□□□ -0.94
USP54-213ENST00000481991 TCEAL5Q5H9L2 206 aa9.17□□□□□ -0.94
USP54-213ENST00000481991 MUM1L1Q5H9M0 696 aa9.17□□□□□ -0.94
USP54-213ENST00000481991 ADHFE1Q8IWW8 467 aa9.17□□□□□ -0.94
USP54-213ENST00000481991 TMEM57Q8N5G2 664 aa9.17□□□□□ -0.94
USP54-213ENST00000481991 BANK1Q8NDB2 785 aa9.17□□□□□ -0.94
USP54-213ENST00000481991 PRSS33Q8NF86 280 aa9.17□□□□□ -0.94
USP54-213ENST00000481991 CHURC1Q8WUH1 139 aa9.17□□□□□ -0.94
USP54-213ENST00000481991 ATOH1Q92858 354 aaPredicted RBP9.17□□□□□ -0.94
USP54-213ENST00000481991 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.17□□□□□ -0.94
USP54-213ENST00000481991 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.17□□□□□ -0.94
USP54-213ENST00000481991 VTA1Q9NP79 307 aa9.17□□□□□ -0.94
USP54-213ENST00000481991 MCM3APO60318 1980 aa9.17□□□□□ -0.94
USP54-213ENST00000481991 A0A0G2JMZ2 1700 aa9.17□□□□□ -0.94
USP54-213ENST00000481991 CHD7Q9P2D1 2997 aa9.16□□□□□ -0.94
USP54-213ENST00000481991 SCN5AQ14524 2016 aa9.16□□□□□ -0.94
USP54-213ENST00000481991 RAD50Q92878 1312 aa9.16□□□□□ -0.94
USP54-213ENST00000481991 PTPDC1A2A3K4 754 aa9.16□□□□□ -0.94
USP54-213ENST00000481991 KPNA6O60684 536 aa9.16□□□□□ -0.94
USP54-213ENST00000481991 PRDM1O75626 825 aa9.16□□□□□ -0.94
USP54-213ENST00000481991 UPP2O95045 317 aa9.16□□□□□ -0.94
USP54-213ENST00000481991 GJB5O95377 273 aa9.16□□□□□ -0.94
USP54-213ENST00000481991 SELPP16109 830 aa9.16□□□□□ -0.94
USP54-213ENST00000481991 RASA1P20936 1047 aa9.16□□□□□ -0.94
USP54-213ENST00000481991 MCCP23508 829 aa9.16□□□□□ -0.94
USP54-213ENST00000481991 SLC1A4P43007 532 aa9.16□□□□□ -0.94
USP54-213ENST00000481991 STAT2P52630 851 aa9.16□□□□□ -0.94
USP54-213ENST00000481991 FOXK2Q01167 660 aa9.16□□□□□ -0.94
USP54-213ENST00000481991 ZP2Q05996 745 aa9.16□□□□□ -0.94
USP54-213ENST00000481991 NFRKBQ6P4R8 1299 aa9.16□□□□□ -0.94
USP54-213ENST00000481991 CNKSR3Q6P9H4 555 aa9.16□□□□□ -0.94
USP54-213ENST00000481991 LRRC8DQ7L1W4 858 aa9.16□□□□□ -0.94
USP54-213ENST00000481991 ERC1Q8IUD2 1116 aa9.16□□□□□ -0.94
USP54-213ENST00000481991 MYOCDQ8IZQ8 938 aa9.16□□□□□ -0.94
USP54-213ENST00000481991 CLASRPQ8N2M8 674 aaKnown RBP9.16□□□□□ -0.94
USP54-213ENST00000481991 COPS5Q92905 334 aa9.16□□□□□ -0.94
USP54-213ENST00000481991 MRPL38Q96DV4 380 aaKnown RBP9.16□□□□□ -0.94
USP54-213ENST00000481991 CYP39A1Q9NYL5 469 aa9.16□□□□□ -0.94
USP54-213ENST00000481991 CCPG1Q9ULG6 757 aa9.16□□□□□ -0.94
USP54-213ENST00000481991 NOP58Q9Y2X3 529 aaKnown RBP9.16□□□□□ -0.94
USP54-213ENST00000481991 INSL6Q9Y581 213 aa9.16□□□□□ -0.94
USP54-213ENST00000481991 ABHD14A-ACY1A0A1B0GW23 586 aa9.15□□□□□ -0.94
USP54-213ENST00000481991 TMEM221A6NGB7 291 aa9.15□□□□□ -0.94
USP54-213ENST00000481991 M0R296 226 aa9.15□□□□□ -0.94
USP54-213ENST00000481991 STXBP3O00186 592 aa9.15□□□□□ -0.94
USP54-213ENST00000481991 TTLL1O95922 423 aa9.15□□□□□ -0.94
USP54-213ENST00000481991 AMHP03971 560 aa9.15□□□□□ -0.94
USP54-213ENST00000481991 CHGBP05060 677 aa9.15□□□□□ -0.94
USP54-213ENST00000481991 FDX1P10109 184 aa9.15□□□□□ -0.94
USP54-213ENST00000481991 TXNP10599 105 aaKnown RBP9.15□□□□□ -0.94
USP54-213ENST00000481991 CALML3P27482 149 aa9.15□□□□□ -0.94
USP54-213ENST00000481991 ADD2P35612 726 aa9.15□□□□□ -0.94
USP54-213ENST00000481991 PDE4DQ08499 809 aa9.15□□□□□ -0.94
USP54-213ENST00000481991 BAATQ14032 418 aaPredicted RBP9.15□□□□□ -0.94
USP54-213ENST00000481991 PPP2R5BQ15173 497 aa9.15□□□□□ -0.94
USP54-213ENST00000481991 LRRFIP1Q32MZ4 808 aaKnown RBP9.15□□□□□ -0.94
USP54-213ENST00000481991 TKFCQ3LXA3 575 aa9.15□□□□□ -0.94
USP54-213ENST00000481991 EPC2Q52LR7 807 aa9.15□□□□□ -0.94
USP54-213ENST00000481991 LIN28BQ6ZN17 250 aaKnown RBP eCLIP9.15□□□□□ -0.94
USP54-213ENST00000481991 KCTD1Q719H9 257 aa9.15□□□□□ -0.94
USP54-213ENST00000481991 CHST3Q7LGC8 479 aa9.15□□□□□ -0.94
USP54-213ENST00000481991 FAM160B2Q86V87 743 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms