RNA–Protein interactions for RNA: ENST00000480210.1

USP54-212, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 640 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-212ENST00000480210 INTS4Q96HW7 963 aaKnown RBP9.5□□□□□ -0.89
USP54-212ENST00000480210 TMX3Q96JJ7 454 aa9.5□□□□□ -0.89
USP54-212ENST00000480210 LARP6Q9BRS8 491 aaKnown RBP9.5□□□□□ -0.89
USP54-212ENST00000480210 EHMT1Q9H9B1 1298 aa9.5□□□□□ -0.89
USP54-212ENST00000480210 NCOA5Q9HCD5 579 aaKnown RBP9.5□□□□□ -0.89
USP54-212ENST00000480210 C6orf50Q9HD87 102 aa9.5□□□□□ -0.89
USP54-212ENST00000480210 ORC3Q9UBD5 711 aaPredicted RBP9.5□□□□□ -0.89
USP54-212ENST00000480210 NRBP1Q9UHY1 535 aa9.5□□□□□ -0.89
USP54-212ENST00000480210 PTPN22Q9Y2R2 807 aa9.5□□□□□ -0.89
USP54-212ENST00000480210 DNAJC25-GNG10A0A024R161 153 aa9.49□□□□□ -0.89
USP54-212ENST00000480210 K7ELQ4 463 aaPredicted RBP9.49□□□□□ -0.89
USP54-212ENST00000480210 FLT3LGP49771 235 aa9.49□□□□□ -0.89
USP54-212ENST00000480210 HSD17B4P51659 736 aa9.49□□□□□ -0.89
USP54-212ENST00000480210 NAPAP54920 295 aa9.49□□□□□ -0.89
USP54-212ENST00000480210 SNAP25P60880 206 aa9.49□□□□□ -0.89
USP54-212ENST00000480210 CUL4AQ13619 759 aa9.49□□□□□ -0.89
USP54-212ENST00000480210 BECN1Q14457 450 aa9.49□□□□□ -0.89
USP54-212ENST00000480210 NBR1Q14596 966 aa9.49□□□□□ -0.89
USP54-212ENST00000480210 PKN1Q16512 942 aa9.49□□□□□ -0.89
USP54-212ENST00000480210 ZNF792Q3KQV3 632 aa9.49□□□□□ -0.89
USP54-212ENST00000480210 MUM1L1Q5H9M0 696 aa9.49□□□□□ -0.89
USP54-212ENST00000480210 OLFML2BQ68BL8 750 aa9.49□□□□□ -0.89
USP54-212ENST00000480210 NSMFQ6X4W1 530 aa9.49□□□□□ -0.89
USP54-212ENST00000480210 NOL8Q76FK4 1167 aaKnown RBP9.49□□□□□ -0.89
USP54-212ENST00000480210 HEATR3Q7Z4Q2 680 aa9.49□□□□□ -0.89
USP54-212ENST00000480210 CCDC83Q8IWF9 413 aa9.49□□□□□ -0.89
USP54-212ENST00000480210 CMTR1Q8N1G2 835 aaKnown RBP9.49□□□□□ -0.89
USP54-212ENST00000480210 FAM184AQ8NB25 1140 aa9.49□□□□□ -0.89
USP54-212ENST00000480210 NSUN7Q8NE18 718 aaKnown RBP9.49□□□□□ -0.89
USP54-212ENST00000480210 SMARCC2Q8TAQ2 1214 aa9.49□□□□□ -0.89
USP54-212ENST00000480210 IWS1Q96ST2 819 aa9.49□□□□□ -0.89
USP54-212ENST00000480210 APBA2Q99767 749 aa9.49□□□□□ -0.89
USP54-212ENST00000480210 ZMYND12Q9H0C1 365 aa9.49□□□□□ -0.89
USP54-212ENST00000480210 PSTPIP2Q9H939 334 aa9.49□□□□□ -0.89
USP54-212ENST00000480210 RIC8AQ9NPQ8 531 aa9.49□□□□□ -0.89
USP54-212ENST00000480210 A1CFQ9NQ94 594 aaKnown RBP9.49□□□□□ -0.89
USP54-212ENST00000480210 CYP39A1Q9NYL5 469 aa9.49□□□□□ -0.89
USP54-212ENST00000480210 MCM3APO60318 1980 aa9.49□□□□□ -0.89
USP54-212ENST00000480210 KIAA1217Q5T5P2 1943 aa9.48□□□□□ -0.89
USP54-212ENST00000480210 PTPDC1A2A3K4 754 aa9.48□□□□□ -0.89
USP54-212ENST00000480210 SMCO2A6NFE2 343 aa9.48□□□□□ -0.89
USP54-212ENST00000480210 STXBP3O00186 592 aa9.48□□□□□ -0.89
USP54-212ENST00000480210 PPP1R11O60927 126 aaPredicted RBP9.48□□□□□ -0.89
USP54-212ENST00000480210 LARGE1O95461 756 aa9.48□□□□□ -0.89
USP54-212ENST00000480210 CFBP00751 764 aa9.48□□□□□ -0.89
USP54-212ENST00000480210 CYP2B6P20813 491 aa9.48□□□□□ -0.89
USP54-212ENST00000480210 CTGFP29279 349 aa9.48□□□□□ -0.89
USP54-212ENST00000480210 RPS6P62753 249 aaKnown RBP9.48□□□□□ -0.89
USP54-212ENST00000480210 UBXN2AP68543 259 aa9.48□□□□□ -0.89
USP54-212ENST00000480210 PRKCZQ05513 592 aa9.48□□□□□ -0.89
USP54-212ENST00000480210 AP3B2Q13367 1082 aa9.48□□□□□ -0.89
USP54-212ENST00000480210 BAATQ14032 418 aaPredicted RBP9.48□□□□□ -0.89
USP54-212ENST00000480210 TRIM29Q14134 588 aa9.48□□□□□ -0.89
USP54-212ENST00000480210 GSE1Q14687 1217 aa9.48□□□□□ -0.89
USP54-212ENST00000480210 MFSD14CQ5VZR4 134 aa9.48□□□□□ -0.89
USP54-212ENST00000480210 WWC2Q6AWC2 1192 aa9.48□□□□□ -0.89
USP54-212ENST00000480210 XRRA1Q6P2D8 792 aa9.48□□□□□ -0.89
USP54-212ENST00000480210 MAMDC4Q6UXC1 1216 aa9.48□□□□□ -0.89
USP54-212ENST00000480210 NECAB1Q8N987 351 aa9.48□□□□□ -0.89
USP54-212ENST00000480210 FAM133AQ8N9E0 248 aa9.48□□□□□ -0.89
USP54-212ENST00000480210 NSUN6Q8TEA1 469 aaKnown RBP9.48□□□□□ -0.89
USP54-212ENST00000480210 PHKBQ93100 1093 aa9.48□□□□□ -0.89
USP54-212ENST00000480210 ARHGAP39Q9C0H5 1083 aa9.48□□□□□ -0.89
USP54-212ENST00000480210 BRMS1Q9HCU9 246 aa9.48□□□□□ -0.89
USP54-212ENST00000480210 HOMER2Q9NSB8 354 aa9.48□□□□□ -0.89
USP54-212ENST00000480210 SYNGAP1Q96PV0 1343 aa9.48□□□□□ -0.89
USP54-212ENST00000480210 CEP350Q5VT06 3117 aa9.48□□□□□ -0.89
USP54-212ENST00000480210 ZSWIM8A7E2V4 1837 aa9.47□□□□□ -0.89
USP54-212ENST00000480210 LCTP09848 1927 aa9.47□□□□□ -0.89
USP54-212ENST00000480210 NFIBO00712 420 aa9.47□□□□□ -0.89
USP54-212ENST00000480210 ADCY3O60266 1144 aa9.47□□□□□ -0.89
USP54-212ENST00000480210 PEX10O60683 326 aa9.47□□□□□ -0.89
USP54-212ENST00000480210 COBLO75128 1261 aa9.47□□□□□ -0.89
USP54-212ENST00000480210 STAM2O75886 525 aa9.47□□□□□ -0.89
USP54-212ENST00000480210 CTDNEP1O95476 244 aa9.47□□□□□ -0.89
USP54-212ENST00000480210 PDCP20941 246 aa9.47□□□□□ -0.89
USP54-212ENST00000480210 GRK4P32298 578 aa9.47□□□□□ -0.89
USP54-212ENST00000480210 ADCY7P51828 1080 aa9.47□□□□□ -0.89
USP54-212ENST00000480210 NLRP5P59047 1200 aa9.47□□□□□ -0.89
USP54-212ENST00000480210 DAGLBQ8NCG7 672 aa9.47□□□□□ -0.89
USP54-212ENST00000480210 MORC4Q8TE76 937 aa9.47□□□□□ -0.89
USP54-212ENST00000480210 PIBF1Q8WXW3 757 aa9.47□□□□□ -0.89
USP54-212ENST00000480210 MAML3Q96JK9 1138 aa9.47□□□□□ -0.89
USP54-212ENST00000480210 ALG1Q9BT22 464 aa9.47□□□□□ -0.89
USP54-212ENST00000480210 GABRQQ9UN88 632 aa9.47□□□□□ -0.89
USP54-212ENST00000480210 SMC3Q9UQE7 1217 aa9.47□□□□□ -0.89
USP54-212ENST00000480210 MYH7BA7E2Y1 1941 aa9.46□□□□□ -0.89
USP54-212ENST00000480210 SPDYE3A6NKU9 549 aa9.46□□□□□ -0.9
USP54-212ENST00000480210 MEIS2O14770 477 aa9.46□□□□□ -0.9
USP54-212ENST00000480210 HMGCRP04035 888 aa9.46□□□□□ -0.9
USP54-212ENST00000480210 FDPSP14324 419 aaKnown RBP9.46□□□□□ -0.9
USP54-212ENST00000480210 ALDH5A1P51649 535 aaPredicted RBP9.46□□□□□ -0.9
USP54-212ENST00000480210 SAFBQ15424 915 aaKnown RBP eCLIP9.46□□□□□ -0.9
USP54-212ENST00000480210 ARHGEF16Q5VV41 709 aa9.46□□□□□ -0.9
USP54-212ENST00000480210 NPLOC4Q8TAT6 608 aa9.46□□□□□ -0.9
USP54-212ENST00000480210 SYTL5Q8TDW5 730 aaPredicted RBP9.46□□□□□ -0.9
USP54-212ENST00000480210 RMDN3Q96TC7 470 aa9.46□□□□□ -0.9
USP54-212ENST00000480210 TINF2Q9BSI4 451 aa9.46□□□□□ -0.9
USP54-212ENST00000480210 ABHD16BQ9H3Z7 469 aa9.46□□□□□ -0.9
USP54-212ENST00000480210 PCDHA4Q9UN74 947 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms