RNA–Protein interactions for RNA: ENST00000478473.1

C9orf3-215, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-215ENST00000478473 ATP11BQ9Y2G3 1177 aa27.31■■□□□ 1.96
C9orf3-215ENST00000478473 C6orf222P0C671 652 aaPredicted RBP27.3■■□□□ 1.96
C9orf3-215ENST00000478473 SMPD1P17405 629 aa27.3■■□□□ 1.96
C9orf3-215ENST00000478473 WTAPQ15007 396 aa27.3■■□□□ 1.96
C9orf3-215ENST00000478473 USH1GQ495M9 461 aa27.3■■□□□ 1.96
C9orf3-215ENST00000478473 FBXO11Q86XK2 927 aa27.3■■□□□ 1.96
C9orf3-215ENST00000478473 PDGFCQ9NRA1 345 aa27.3■■□□□ 1.96
C9orf3-215ENST00000478473 DDX49Q9Y6V7 483 aaKnown RBP27.3■■□□□ 1.96
C9orf3-215ENST00000478473 SLC27A2O14975 620 aa27.29■■□□□ 1.96
C9orf3-215ENST00000478473 CALML3P27482 149 aa27.29■■□□□ 1.96
C9orf3-215ENST00000478473 TLE2Q04725 743 aa27.29■■□□□ 1.96
C9orf3-215ENST00000478473 SLC35G1Q2M3R5 365 aa27.29■■□□□ 1.96
C9orf3-215ENST00000478473 MCF2L2Q86YR7 1114 aa27.29■■□□□ 1.96
C9orf3-215ENST00000478473 PDLIM7Q9NR12 457 aa27.29■■□□□ 1.96
C9orf3-215ENST00000478473 MRPL11Q9Y3B7 192 aaKnown RBP27.29■■□□□ 1.96
C9orf3-215ENST00000478473 ASGR1P07306 291 aa27.28■■□□□ 1.96
C9orf3-215ENST00000478473 CDK7P50613 346 aa27.28■■□□□ 1.96
C9orf3-215ENST00000478473 IRX5P78411 483 aaPredicted RBP27.28■■□□□ 1.96
C9orf3-215ENST00000478473 DUSP28Q4G0W2 176 aa27.28■■□□□ 1.96
C9orf3-215ENST00000478473 GNASQ5JWF2 1037 aa27.28■■□□□ 1.96
C9orf3-215ENST00000478473 FBXO16Q8IX29 292 aaPredicted RBP27.28■■□□□ 1.96
C9orf3-215ENST00000478473 AMNQ9BXJ7 453 aa27.28■■□□□ 1.96
C9orf3-215ENST00000478473 STARD7Q9NQZ5 370 aa27.28■■□□□ 1.96
C9orf3-215ENST00000478473 ZBTB5O15062 677 aa27.27■■□□□ 1.96
C9orf3-215ENST00000478473 TMEM67Q5HYA8 995 aa27.27■■□□□ 1.96
C9orf3-215ENST00000478473 CREB3L3Q68CJ9 461 aa27.27■■□□□ 1.96
C9orf3-215ENST00000478473 CHST3Q7LGC8 479 aa27.27■■□□□ 1.96
C9orf3-215ENST00000478473 TLK2Q86UE8 772 aa27.27■■□□□ 1.96
C9orf3-215ENST00000478473 TDHQ8IZJ6 230 aa27.27■■□□□ 1.96
C9orf3-215ENST00000478473 SAMD3Q8N6K7 520 aa27.27■■□□□ 1.96
C9orf3-215ENST00000478473 SYTL5Q8TDW5 730 aaPredicted RBP27.27■■□□□ 1.96
C9orf3-215ENST00000478473 GLT1D1Q96MS3 346 aa27.27■■□□□ 1.96
C9orf3-215ENST00000478473 MPHOSPH6Q99547 160 aaKnown RBP27.27■■□□□ 1.96
C9orf3-215ENST00000478473 LY9Q9HBG7 655 aa27.27■■□□□ 1.96
C9orf3-215ENST00000478473 MAP3K20Q9NYL2 800 aaKnown RBP27.27■■□□□ 1.96
C9orf3-215ENST00000478473 PRKAG2Q9UGJ0 569 aa27.27■■□□□ 1.96
C9orf3-215ENST00000478473 LTBP2Q14767 1821 aa27.27■■□□□ 1.96
C9orf3-215ENST00000478473 B4DLN1 442 aa27.26■■□□□ 1.95
C9orf3-215ENST00000478473 MRPL12P52815 198 aaKnown RBP27.26■■□□□ 1.95
C9orf3-215ENST00000478473 LRIT3Q3SXY7 679 aa27.26■■□□□ 1.95
C9orf3-215ENST00000478473 TBC1D5Q92609 795 aa27.26■■□□□ 1.95
C9orf3-215ENST00000478473 CCDC136Q96JN2 1154 aa27.26■■□□□ 1.95
C9orf3-215ENST00000478473 TMEM87BQ96K49 555 aa27.26■■□□□ 1.95
C9orf3-215ENST00000478473 VAT1LQ9HCJ6 419 aa27.26■■□□□ 1.95
C9orf3-215ENST00000478473 OPLAHO14841 1288 aa27.25■■□□□ 1.95
C9orf3-215ENST00000478473 KIAA0355O15063 1070 aa27.25■■□□□ 1.95
C9orf3-215ENST00000478473 CYTH3O43739 400 aa27.25■■□□□ 1.95
C9orf3-215ENST00000478473 PPP1R11O60927 126 aaPredicted RBP27.25■■□□□ 1.95
C9orf3-215ENST00000478473 MCM5P33992 734 aa27.25■■□□□ 1.95
C9orf3-215ENST00000478473 TRAF1Q13077 416 aa27.25■■□□□ 1.95
C9orf3-215ENST00000478473 EEPD1Q7L9B9 569 aa27.25■■□□□ 1.95
C9orf3-215ENST00000478473 TMTC2Q8N394 836 aa27.25■■□□□ 1.95
C9orf3-215ENST00000478473 UBE2OQ9C0C9 1292 aaKnown RBP27.25■■□□□ 1.95
C9orf3-215ENST00000478473 ANO2Q9NQ90 1003 aa27.25■■□□□ 1.95
C9orf3-215ENST00000478473 SZT2Q5T011 3432 aa27.25■■□□□ 1.95
C9orf3-215ENST00000478473 TRIM43BA6NCK2 446 aa27.24■■□□□ 1.95
C9orf3-215ENST00000478473 DHX16O60231 1041 aaKnown RBP27.24■■□□□ 1.95
C9orf3-215ENST00000478473 CDC45O75419 566 aa27.24■■□□□ 1.95
C9orf3-215ENST00000478473 CABYRO75952 493 aa27.24■■□□□ 1.95
C9orf3-215ENST00000478473 DDAH1O94760 285 aa27.24■■□□□ 1.95
C9orf3-215ENST00000478473 SMARCA1P28370 1054 aa27.24■■□□□ 1.95
C9orf3-215ENST00000478473 LIFRP42702 1097 aa27.24■■□□□ 1.95
C9orf3-215ENST00000478473 HSD17B4P51659 736 aa27.24■■□□□ 1.95
C9orf3-215ENST00000478473 MDM2Q00987 491 aaPredicted RBP27.24■■□□□ 1.95
C9orf3-215ENST00000478473 FSCN1Q16658 493 aaKnown RBP27.24■■□□□ 1.95
C9orf3-215ENST00000478473 TSGA10IPQ3SY00 556 aa27.24■■□□□ 1.95
C9orf3-215ENST00000478473 CATIPQ7Z7H3 387 aa27.24■■□□□ 1.95
C9orf3-215ENST00000478473 SLC43A3Q8NBI5 491 aa27.24■■□□□ 1.95
C9orf3-215ENST00000478473 TRIM43Q96BQ3 446 aaPredicted RBP27.24■■□□□ 1.95
C9orf3-215ENST00000478473 LBHD1Q9BQE6 289 aaPredicted RBP27.24■■□□□ 1.95
C9orf3-215ENST00000478473 AP5M1Q9H0R1 490 aa27.24■■□□□ 1.95
C9orf3-215ENST00000478473 COL20A1Q9P218 1284 aa27.24■■□□□ 1.95
C9orf3-215ENST00000478473 MYH6P13533 1939 aa27.24■■□□□ 1.95
C9orf3-215ENST00000478473 MROH7Q68CQ1 1323 aa27.23■■□□□ 1.95
C9orf3-215ENST00000478473 DYNC1LI2O43237 492 aaPredicted RBP27.23■■□□□ 1.95
C9orf3-215ENST00000478473 PRC1O43663 620 aa27.23■■□□□ 1.95
C9orf3-215ENST00000478473 CLTBP09497 229 aa27.23■■□□□ 1.95
C9orf3-215ENST00000478473 PDE4DQ08499 809 aa27.23■■□□□ 1.95
C9orf3-215ENST00000478473 TMEM63BQ5T3F8 832 aa27.23■■□□□ 1.95
C9orf3-215ENST00000478473 SH3RF1Q7Z6J0 888 aa27.23■■□□□ 1.95
C9orf3-215ENST00000478473 NSUN6Q8TEA1 469 aaKnown RBP27.23■■□□□ 1.95
C9orf3-215ENST00000478473 IWS1Q96ST2 819 aa27.23■■□□□ 1.95
C9orf3-215ENST00000478473 SEZ6LQ9BYH1 1024 aa27.23■■□□□ 1.95
C9orf3-215ENST00000478473 WDR11Q9BZH6 1224 aa27.23■■□□□ 1.95
C9orf3-215ENST00000478473 ARVCFO00192 962 aa27.22■■□□□ 1.95
C9orf3-215ENST00000478473 SH2B2O14492 632 aaPredicted RBP27.22■■□□□ 1.95
C9orf3-215ENST00000478473 NKRFO15226 690 aaKnown RBP eCLIP27.22■■□□□ 1.954e-9■■□□□ 12.2
C9orf3-215ENST00000478473 FAAP100Q0VG06 881 aa27.22■■□□□ 1.95
C9orf3-215ENST00000478473 COL9A3Q14050 684 aaPredicted RBP27.22■■□□□ 1.95
C9orf3-215ENST00000478473 CASC1Q6TDU7 716 aa27.22■■□□□ 1.95
C9orf3-215ENST00000478473 NOL8Q76FK4 1167 aaKnown RBP27.22■■□□□ 1.95
C9orf3-215ENST00000478473 ZNF654Q8IZM8 581 aa27.22■■□□□ 1.95
C9orf3-215ENST00000478473 SCFD2Q8WU76 684 aa27.22■■□□□ 1.95
C9orf3-215ENST00000478473 TAAR1Q96RJ0 339 aa27.22■■□□□ 1.95
C9orf3-215ENST00000478473 A0A0U1RQG5 324 aaPredicted RBP27.21■■□□□ 1.95
C9orf3-215ENST00000478473 BEX3Q00994 111 aa27.21■■□□□ 1.95
C9orf3-215ENST00000478473 RNF20Q5VTR2 975 aa27.21■■□□□ 1.95
C9orf3-215ENST00000478473 GPR153Q6NV75 609 aa27.21■■□□□ 1.95
C9orf3-215ENST00000478473 GPHNQ9NQX3 736 aaPredicted RBP27.21■■□□□ 1.95
C9orf3-215ENST00000478473 PCDHA1Q9Y5I3 950 aa27.21■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms