RNA–Protein interactions for RNA: ENST00000477612.5

COL9A3-211, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 635 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-211ENST00000477612 MAGEA10P43363 369 aaPredicted RBP25.34■■□□□ 1.65
COL9A3-211ENST00000477612 CREB3L3Q68CJ9 461 aa25.34■■□□□ 1.65
COL9A3-211ENST00000477612 FBXO11Q86XK2 927 aa25.34■■□□□ 1.65
COL9A3-211ENST00000477612 MAP3K14Q99558 947 aa25.34■■□□□ 1.65
COL9A3-211ENST00000477612 VAT1LQ9HCJ6 419 aa25.34■■□□□ 1.65
COL9A3-211ENST00000477612 ANO2Q9NQ90 1003 aa25.34■■□□□ 1.65
COL9A3-211ENST00000477612 RBM47A0AV96 593 aaKnown RBP25.33■■□□□ 1.65
COL9A3-211ENST00000477612 C6orf222P0C671 652 aaPredicted RBP25.33■■□□□ 1.65
COL9A3-211ENST00000477612 GHRHRQ02643 423 aa25.33■■□□□ 1.65
COL9A3-211ENST00000477612 TRIM60Q495X7 471 aa25.33■■□□□ 1.65
COL9A3-211ENST00000477612 TMEM67Q5HYA8 995 aa25.33■■□□□ 1.65
COL9A3-211ENST00000477612 NUP133Q8WUM0 1156 aa25.33■■□□□ 1.65
COL9A3-211ENST00000477612 PDGFCQ9NRA1 345 aa25.33■■□□□ 1.65
COL9A3-211ENST00000477612 ATP11BQ9Y2G3 1177 aa25.33■■□□□ 1.65
COL9A3-211ENST00000477612 MRPL11Q9Y3B7 192 aaKnown RBP25.33■■□□□ 1.65
COL9A3-211ENST00000477612 KIAA1217Q5T5P2 1943 aa25.33■■□□□ 1.65
COL9A3-211ENST00000477612 DHX16O60231 1041 aaKnown RBP25.32■■□□□ 1.64
COL9A3-211ENST00000477612 SMPD1P17405 629 aa25.32■■□□□ 1.64
COL9A3-211ENST00000477612 MCM5P33992 734 aa25.32■■□□□ 1.64
COL9A3-211ENST00000477612 IRX5P78411 483 aaPredicted RBP25.32■■□□□ 1.64
COL9A3-211ENST00000477612 SLC35G1Q2M3R5 365 aa25.32■■□□□ 1.64
COL9A3-211ENST00000477612 MCF2L2Q86YR7 1114 aa25.32■■□□□ 1.64
COL9A3-211ENST00000477612 FBXO16Q8IX29 292 aaPredicted RBP25.32■■□□□ 1.64
COL9A3-211ENST00000477612 TBC1D5Q92609 795 aa25.32■■□□□ 1.64
COL9A3-211ENST00000477612 TMEM87BQ96K49 555 aa25.32■■□□□ 1.64
COL9A3-211ENST00000477612 AMNQ9BXJ7 453 aa25.32■■□□□ 1.64
COL9A3-211ENST00000477612 LY9Q9HBG7 655 aa25.32■■□□□ 1.64
COL9A3-211ENST00000477612 ELP1O95163 1332 aa25.32■■□□□ 1.64
COL9A3-211ENST00000477612 ZBTB5O15062 677 aa25.31■■□□□ 1.64
COL9A3-211ENST00000477612 CDC45O75419 566 aa25.31■■□□□ 1.64
COL9A3-211ENST00000477612 ASGR1P07306 291 aa25.31■■□□□ 1.64
COL9A3-211ENST00000477612 EEPD1Q7L9B9 569 aa25.31■■□□□ 1.64
COL9A3-211ENST00000477612 CATIPQ7Z7H3 387 aa25.31■■□□□ 1.64
COL9A3-211ENST00000477612 TMTC2Q8N394 836 aa25.31■■□□□ 1.64
COL9A3-211ENST00000477612 MPHOSPH6Q99547 160 aaKnown RBP25.31■■□□□ 1.64
COL9A3-211ENST00000477612 STARD7Q9NQZ5 370 aa25.31■■□□□ 1.64
COL9A3-211ENST00000477612 B4DLN1 442 aa25.3■■□□□ 1.64
COL9A3-211ENST00000477612 CYTH3O43739 400 aa25.3■■□□□ 1.64
COL9A3-211ENST00000477612 MRPL12P52815 198 aaKnown RBP25.3■■□□□ 1.64
COL9A3-211ENST00000477612 DUSP28Q4G0W2 176 aa25.3■■□□□ 1.64
COL9A3-211ENST00000477612 GNASQ5JWF2 1037 aa25.3■■□□□ 1.64
COL9A3-211ENST00000477612 CASC1Q6TDU7 716 aa25.3■■□□□ 1.64
COL9A3-211ENST00000477612 ANKRD33Q7Z3H0 272 aa25.3■■□□□ 1.64
COL9A3-211ENST00000477612 SYTL5Q8TDW5 730 aaPredicted RBP25.3■■□□□ 1.64
COL9A3-211ENST00000477612 TOX2Q96NM4 488 aa25.3■■□□□ 1.64
COL9A3-211ENST00000477612 MAP3K20Q9NYL2 800 aaKnown RBP25.3■■□□□ 1.64
COL9A3-211ENST00000477612 PRC1O43663 620 aa25.29■■□□□ 1.64
COL9A3-211ENST00000477612 PPP1R11O60927 126 aaPredicted RBP25.29■■□□□ 1.64
COL9A3-211ENST00000477612 LIFRP42702 1097 aa25.29■■□□□ 1.64
COL9A3-211ENST00000477612 TLE2Q04725 743 aa25.29■■□□□ 1.64
COL9A3-211ENST00000477612 COL9A3Q14050 684 aaPredicted RBP25.29■■□□□ 1.64
COL9A3-211ENST00000477612 TSGA10IPQ3SY00 556 aa25.29■■□□□ 1.64
COL9A3-211ENST00000477612 TLK2Q86UE8 772 aa25.29■■□□□ 1.64
COL9A3-211ENST00000477612 SAMD3Q8N6K7 520 aa25.29■■□□□ 1.64
COL9A3-211ENST00000477612 GLT1D1Q96MS3 346 aa25.29■■□□□ 1.64
COL9A3-211ENST00000477612 PDLIM7Q9NR12 457 aa25.29■■□□□ 1.64
COL9A3-211ENST00000477612 SH2B2O14492 632 aaPredicted RBP25.28■■□□□ 1.64
COL9A3-211ENST00000477612 OPLAHO14841 1288 aa25.28■■□□□ 1.64
COL9A3-211ENST00000477612 DDAH1O94760 285 aa25.28■■□□□ 1.64
COL9A3-211ENST00000477612 SMARCA1P28370 1054 aa25.28■■□□□ 1.64
COL9A3-211ENST00000477612 CDK7P50613 346 aa25.28■■□□□ 1.64
COL9A3-211ENST00000477612 TRAF1Q13077 416 aa25.28■■□□□ 1.64
COL9A3-211ENST00000477612 TMEM63BQ5T3F8 832 aa25.28■■□□□ 1.64
COL9A3-211ENST00000477612 RNF20Q5VTR2 975 aa25.28■■□□□ 1.64
COL9A3-211ENST00000477612 ZNF654Q8IZM8 581 aa25.28■■□□□ 1.64
COL9A3-211ENST00000477612 COL20A1Q9P218 1284 aa25.28■■□□□ 1.64
COL9A3-211ENST00000477612 PRKAG2Q9UGJ0 569 aa25.28■■□□□ 1.64
COL9A3-211ENST00000477612 HSD17B4P51659 736 aa25.27■■□□□ 1.64
COL9A3-211ENST00000477612 PDE4DQ08499 809 aa25.27■■□□□ 1.64
COL9A3-211ENST00000477612 NOL8Q76FK4 1167 aaKnown RBP25.27■■□□□ 1.64
COL9A3-211ENST00000477612 TAAR1Q96RJ0 339 aa25.27■■□□□ 1.64
COL9A3-211ENST00000477612 IWS1Q96ST2 819 aa25.27■■□□□ 1.64
COL9A3-211ENST00000477612 WDR11Q9BZH6 1224 aa25.27■■□□□ 1.64
COL9A3-211ENST00000477612 AP5M1Q9H0R1 490 aa25.27■■□□□ 1.64
COL9A3-211ENST00000477612 GPHNQ9NQX3 736 aaPredicted RBP25.27■■□□□ 1.64
COL9A3-211ENST00000477612 SZT2Q5T011 3432 aa25.27■■□□□ 1.64
COL9A3-211ENST00000477612 LAMA3Q16787 3333 aa25.26■■□□□ 1.63
COL9A3-211ENST00000477612 DYNC1LI2O43237 492 aaPredicted RBP25.26■■□□□ 1.63
COL9A3-211ENST00000477612 MDM2Q00987 491 aaPredicted RBP25.26■■□□□ 1.63
COL9A3-211ENST00000477612 BEX3Q00994 111 aa25.26■■□□□ 1.63
COL9A3-211ENST00000477612 NSUN6Q8TEA1 469 aaKnown RBP25.26■■□□□ 1.63
COL9A3-211ENST00000477612 PIGSQ96S52 555 aa25.26■■□□□ 1.63
COL9A3-211ENST00000477612 UBE2OQ9C0C9 1292 aaKnown RBP25.26■■□□□ 1.63
COL9A3-211ENST00000477612 PCDHA1Q9Y5I3 950 aa25.26■■□□□ 1.63
COL9A3-211ENST00000477612 PNMA6FA0A0J9YX94 578 aa25.25■■□□□ 1.63
COL9A3-211ENST00000477612 CABYRO75952 493 aa25.25■■□□□ 1.63
COL9A3-211ENST00000477612 NEFLP07196 543 aa25.25■■□□□ 1.63
COL9A3-211ENST00000477612 CLTBP09497 229 aa25.25■■□□□ 1.63
COL9A3-211ENST00000477612 FSCN1Q16658 493 aaKnown RBP25.25■■□□□ 1.63
COL9A3-211ENST00000477612 SH3RF1Q7Z6J0 888 aa25.25■■□□□ 1.63
COL9A3-211ENST00000477612 TDHQ8IZJ6 230 aa25.25■■□□□ 1.63
COL9A3-211ENST00000477612 LBHD1Q9BQE6 289 aaPredicted RBP25.25■■□□□ 1.63
COL9A3-211ENST00000477612 MROH7Q68CQ1 1323 aa25.24■■□□□ 1.63
COL9A3-211ENST00000477612 TRIM43BA6NCK2 446 aa25.24■■□□□ 1.63
COL9A3-211ENST00000477612 KIAA0355O15063 1070 aa25.24■■□□□ 1.63
COL9A3-211ENST00000477612 NKRFO15226 690 aaKnown RBP eCLIP25.24■■□□□ 1.63
COL9A3-211ENST00000477612 PTGS1P23219 599 aa25.24■■□□□ 1.63
COL9A3-211ENST00000477612 KIF5BP33176 963 aa25.24■■□□□ 1.63
COL9A3-211ENST00000477612 FAAP100Q0VG06 881 aa25.24■■□□□ 1.63
COL9A3-211ENST00000477612 SGMS1Q86VZ5 419 aa25.24■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms