RNA–Protein interactions for RNA: ENST00000477572.1

VPS50-213, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-213ENST00000477572 CYBBP04839 570 aa7.44□□□□□ -1.22
VPS50-213ENST00000477572 LIMS1P48059 325 aa7.44□□□□□ -1.22
VPS50-213ENST00000477572 AFF3P51826 1226 aaKnown RBP7.44□□□□□ -1.22
VPS50-213ENST00000477572 PRR5P85299 388 aa7.44□□□□□ -1.22
VPS50-213ENST00000477572 CNKSR3Q6P9H4 555 aa7.44□□□□□ -1.22
VPS50-213ENST00000477572 PAQR3Q6TCH7 311 aa7.44□□□□□ -1.22
VPS50-213ENST00000477572 C6orf15Q6UXA7 325 aaPredicted RBP7.44□□□□□ -1.22
VPS50-213ENST00000477572 GPRC5CQ9NQ84 441 aa7.44□□□□□ -1.22
VPS50-213ENST00000477572 CLEC1BQ9P126 229 aa7.44□□□□□ -1.22
VPS50-213ENST00000477572 NPHP3-ACAD11A0A0J9YXS1 232 aa7.43□□□□□ -1.22
VPS50-213ENST00000477572 TCF3P15923 654 aa7.43□□□□□ -1.22
VPS50-213ENST00000477572 TTLL10Q6ZVT0 673 aa7.43□□□□□ -1.22
VPS50-213ENST00000477572 FAM129CQ86XR2 697 aa7.43□□□□□ -1.22
VPS50-213ENST00000477572 VPS37DQ86XT2 251 aa7.43□□□□□ -1.22
VPS50-213ENST00000477572 BVESQ8NE79 360 aa7.43□□□□□ -1.22
VPS50-213ENST00000477572 DACT3Q96B18 629 aaPredicted RBP7.43□□□□□ -1.22
VPS50-213ENST00000477572 PWWP2AQ96N64 755 aa7.43□□□□□ -1.22
VPS50-213ENST00000477572 ZCCHC4Q9H5U6 513 aa7.43□□□□□ -1.22
VPS50-213ENST00000477572 TRIM13O60858 407 aa7.42□□□□□ -1.22
VPS50-213ENST00000477572 PAMP19021 973 aa7.42□□□□□ -1.22
VPS50-213ENST00000477572 ETFBP38117 255 aa7.42□□□□□ -1.22
VPS50-213ENST00000477572 SCRN1Q12765 414 aa7.42□□□□□ -1.22
VPS50-213ENST00000477572 GRB10Q13322 594 aa7.42□□□□□ -1.22
VPS50-213ENST00000477572 LZTR1Q8N653 840 aa7.42□□□□□ -1.22
VPS50-213ENST00000477572 ACTR10Q9NZ32 417 aa7.42□□□□□ -1.22
VPS50-213ENST00000477572 EMC9Q9Y3B6 208 aa7.42□□□□□ -1.22
VPS50-213ENST00000477572 NOP56O00567 594 aaKnown RBP7.41□□□□□ -1.22
VPS50-213ENST00000477572 SRGAP3O43295 1099 aa7.41□□□□□ -1.22
VPS50-213ENST00000477572 PLS3P13797 630 aa7.41□□□□□ -1.22
VPS50-213ENST00000477572 HOXA5P20719 270 aa7.41□□□□□ -1.22
VPS50-213ENST00000477572 RBM25P49756 843 aaKnown RBP7.41□□□□□ -1.22
VPS50-213ENST00000477572 CORO7P57737 925 aa7.41□□□□□ -1.22
VPS50-213ENST00000477572 NCAPHQ15003 741 aa7.41□□□□□ -1.22
VPS50-213ENST00000477572 MBLAC2Q68D91 279 aa7.41□□□□□ -1.22
VPS50-213ENST00000477572 LILRA6Q6PI73 481 aa7.41□□□□□ -1.22
VPS50-213ENST00000477572 TMEM151BQ8IW70 566 aa7.41□□□□□ -1.22
VPS50-213ENST00000477572 NLGN2Q8NFZ4 835 aa7.41□□□□□ -1.22
VPS50-213ENST00000477572 MICAL1Q8TDZ2 1067 aa7.41□□□□□ -1.22
VPS50-213ENST00000477572 USP33Q8TEY7 942 aa7.41□□□□□ -1.22
VPS50-213ENST00000477572 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.41□□□□□ -1.22
VPS50-213ENST00000477572 PARD6AQ9NPB6 346 aa7.41□□□□□ -1.22
VPS50-213ENST00000477572 BTG4Q9NY30 223 aa7.41□□□□□ -1.22
VPS50-213ENST00000477572 C7orf72A4D263 438 aa7.4□□□□□ -1.22
VPS50-213ENST00000477572 KRTAP9-7A8MTY7 169 aa7.4□□□□□ -1.22
VPS50-213ENST00000477572 TBX1O43435 398 aa7.4□□□□□ -1.22
VPS50-213ENST00000477572 DDAH1O94760 285 aa7.4□□□□□ -1.22
VPS50-213ENST00000477572 GLI4P10075 376 aa7.4□□□□□ -1.22
VPS50-213ENST00000477572 MC3RP41968 323 aa7.4□□□□□ -1.22
VPS50-213ENST00000477572 GTF2IRD2BQ6EKJ0 949 aa7.4□□□□□ -1.22
VPS50-213ENST00000477572 GTF2IRD2Q86UP8 949 aa7.4□□□□□ -1.22
VPS50-213ENST00000477572 FAM178BQ8IXR5 827 aa7.4□□□□□ -1.22
VPS50-213ENST00000477572 FUCA1P04066 466 aa7.39□□□□□ -1.23
VPS50-213ENST00000477572 THBDP07204 575 aa7.39□□□□□ -1.23
VPS50-213ENST00000477572 ATF2P15336 505 aa7.39□□□□□ -1.23
VPS50-213ENST00000477572 SV2CQ496J9 727 aa7.39□□□□□ -1.23
VPS50-213ENST00000477572 POMZP3Q6PJE2 187 aa7.39□□□□□ -1.23
VPS50-213ENST00000477572 CABP7Q86V35 215 aa7.39□□□□□ -1.23
VPS50-213ENST00000477572 MARCH10Q8NA82 808 aaPredicted RBP7.39□□□□□ -1.23
VPS50-213ENST00000477572 BTN2A2Q8WVV5 523 aa7.39□□□□□ -1.23
VPS50-213ENST00000477572 MTA3Q9BTC8 594 aa7.39□□□□□ -1.23
VPS50-213ENST00000477572 LRP2BPQ9P2M1 347 aa7.39□□□□□ -1.23
VPS50-213ENST00000477572 SIT1Q9Y3P8 196 aa7.39□□□□□ -1.23
VPS50-213ENST00000477572 IRS2Q9Y4H2 1338 aa7.38□□□□□ -1.23
VPS50-213ENST00000477572 NPHS1O60500 1241 aa7.38□□□□□ -1.23
VPS50-213ENST00000477572 NAT2P11245 290 aa7.38□□□□□ -1.23
VPS50-213ENST00000477572 PFKLP17858 780 aa7.38□□□□□ -1.23
VPS50-213ENST00000477572 IGFBP6P24592 240 aaPredicted RBP7.38□□□□□ -1.23
VPS50-213ENST00000477572 GNL2Q13823 731 aaKnown RBP7.38□□□□□ -1.23
VPS50-213ENST00000477572 TRIM59Q8IWR1 403 aa7.38□□□□□ -1.23
VPS50-213ENST00000477572 SYT8Q8NBV8 401 aa7.38□□□□□ -1.23
VPS50-213ENST00000477572 ALG3Q92685 438 aa7.38□□□□□ -1.23
VPS50-213ENST00000477572 COPS5Q92905 334 aa7.38□□□□□ -1.23
VPS50-213ENST00000477572 MRGPRX3Q96LB0 322 aa7.38□□□□□ -1.23
VPS50-213ENST00000477572 C20orf173Q96LM9 149 aa7.38□□□□□ -1.23
VPS50-213ENST00000477572 KCNC2Q96PR1 638 aa7.38□□□□□ -1.23
VPS50-213ENST00000477572 MARCH2Q9P0N8 246 aa7.38□□□□□ -1.23
VPS50-213ENST00000477572 PRKAG3Q9UGI9 489 aa7.38□□□□□ -1.23
VPS50-213ENST00000477572 ITGAVP06756 1048 aa7.37□□□□□ -1.23
VPS50-213ENST00000477572 ASGR2P07307 311 aa7.37□□□□□ -1.23
VPS50-213ENST00000477572 FBLN1P23142 703 aa7.37□□□□□ -1.23
VPS50-213ENST00000477572 DNAJA1P31689 397 aaKnown RBP7.37□□□□□ -1.23
VPS50-213ENST00000477572 ECI1P42126 302 aa7.37□□□□□ -1.23
VPS50-213ENST00000477572 CTSWP56202 376 aa7.37□□□□□ -1.23
VPS50-213ENST00000477572 CYP4F3Q08477 520 aa7.37□□□□□ -1.23
VPS50-213ENST00000477572 TARBP2Q15633 366 aaKnown RBP7.37□□□□□ -1.23
VPS50-213ENST00000477572 INF2Q27J81 1249 aa7.37□□□□□ -1.23
VPS50-213ENST00000477572 MRM1Q6IN84 353 aaKnown RBP7.37□□□□□ -1.23
VPS50-213ENST00000477572 ZDHHC14Q8IZN3 488 aa7.37□□□□□ -1.23
VPS50-213ENST00000477572 ADGRG2Q8IZP9 1017 aa7.37□□□□□ -1.23
VPS50-213ENST00000477572 CRACR2BQ8N4Y2 399 aaPredicted RBP7.37□□□□□ -1.23
VPS50-213ENST00000477572 FEZF2Q8TBJ5 459 aa7.37□□□□□ -1.23
VPS50-213ENST00000477572 DPF3Q92784 378 aa7.37□□□□□ -1.23
VPS50-213ENST00000477572 ZNF408Q9H9D4 720 aa7.37□□□□□ -1.23
VPS50-213ENST00000477572 FAN1Q9Y2M0 1017 aa7.37□□□□□ -1.23
VPS50-213ENST00000477572 NTRK1P04629 796 aa7.36□□□□□ -1.23
VPS50-213ENST00000477572 PMLP29590 882 aa7.36□□□□□ -1.23
VPS50-213ENST00000477572 ZNF143P52747 638 aaPredicted RBP7.36□□□□□ -1.23
VPS50-213ENST00000477572 FOXO4P98177 505 aa7.36□□□□□ -1.23
VPS50-213ENST00000477572 ARID5AQ03989 594 aa7.36□□□□□ -1.23
VPS50-213ENST00000477572 SF1Q15637 639 aaKnown RBP7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms