RNA–Protein interactions for RNA: ENST00000474455.1

SMIM11A-204, Transcript of small integral membrane protein 11A, humanhuman

TSL 1 (best)

Gene SMIM11A, Length 1,857 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM11A-204ENST00000474455 FTOQ9C0B1 505 aaKnown RBP eCLIP23.6■■□□□ 1.37
SMIM11A-204ENST00000474455 RANBP17Q9H2T7 1088 aaKnown RBP23.6■■□□□ 1.37
SMIM11A-204ENST00000474455 SH3GLB2Q9NR46 395 aa23.6■■□□□ 1.37
SMIM11A-204ENST00000474455 SMCO2A6NFE2 343 aa23.59■■□□□ 1.37
SMIM11A-204ENST00000474455 CXCL11O14625 94 aa23.59■■□□□ 1.37
SMIM11A-204ENST00000474455 KINO60870 393 aaKnown RBP23.59■■□□□ 1.37
SMIM11A-204ENST00000474455 U2AF2P26368 475 aaKnown RBP eCLIP23.59■■□□□ 1.37
SMIM11A-204ENST00000474455 CEP135Q66GS9 1140 aa23.59■■□□□ 1.37
SMIM11A-204ENST00000474455 ATG4CQ96DT6 458 aa23.59■■□□□ 1.37
SMIM11A-204ENST00000474455 NAT10Q9H0A0 1025 aaKnown RBP23.59■■□□□ 1.37
SMIM11A-204ENST00000474455 PPP1R9AQ9ULJ8 1098 aa23.59■■□□□ 1.37
SMIM11A-204ENST00000474455 KIF2AO00139 706 aaPredicted RBP23.58■■□□□ 1.37
SMIM11A-204ENST00000474455 FAM160A1Q05DH4 1040 aa23.58■■□□□ 1.37
SMIM11A-204ENST00000474455 CCDC144BQ3MJ40 725 aa23.58■■□□□ 1.37
SMIM11A-204ENST00000474455 ZNF784Q8NCA9 323 aaPredicted RBP23.58■■□□□ 1.37
SMIM11A-204ENST00000474455 PCDHA1Q9Y5I3 950 aa23.58■■□□□ 1.37
SMIM11A-204ENST00000474455 ZNF536O15090 1300 aa23.58■■□□□ 1.36
SMIM11A-204ENST00000474455 PEX10O60683 326 aa23.58■■□□□ 1.36
SMIM11A-204ENST00000474455 FBXO11Q86XK2 927 aa23.58■■□□□ 1.36
SMIM11A-204ENST00000474455 BECN2A8MW95 431 aa23.57■■□□□ 1.36
SMIM11A-204ENST00000474455 KRT2P35908 639 aa23.57■■□□□ 1.36
SMIM11A-204ENST00000474455 GSDMDP57764 484 aa23.57■■□□□ 1.36
SMIM11A-204ENST00000474455 GNL2Q13823 731 aaKnown RBP23.57■■□□□ 1.36
SMIM11A-204ENST00000474455 POTEEQ6S8J3 1075 aa23.57■■□□□ 1.36
SMIM11A-204ENST00000474455 SMC1BQ8NDV3 1235 aa23.57■■□□□ 1.36
SMIM11A-204ENST00000474455 ENGASEQ8NFI3 743 aa23.57■■□□□ 1.36
SMIM11A-204ENST00000474455 AGBL1Q96MI9 1066 aa23.57■■□□□ 1.36
SMIM11A-204ENST00000474455 ZMYND12Q9H0C1 365 aa23.57■■□□□ 1.36
SMIM11A-204ENST00000474455 SAFBQ15424 915 aaKnown RBP eCLIP23.56■■□□□ 1.36
SMIM11A-204ENST00000474455 C11orf57Q6ZUT1 292 aaPredicted RBP23.56■■□□□ 1.36
SMIM11A-204ENST00000474455 SAPCD2Q86UD0 394 aa23.56■■□□□ 1.36
SMIM11A-204ENST00000474455 CEP57L1Q8IYX8 460 aa23.56■■□□□ 1.36
SMIM11A-204ENST00000474455 BLIDQ8IZY5 108 aa23.56■■□□□ 1.36
SMIM11A-204ENST00000474455 CPXCR1Q8N123 301 aa23.56■■□□□ 1.36
SMIM11A-204ENST00000474455 RGS22Q8NE09 1264 aa23.56■■□□□ 1.36
SMIM11A-204ENST00000474455 TNFRSF25Q93038 417 aa23.56■■□□□ 1.36
SMIM11A-204ENST00000474455 AMNQ9BXJ7 453 aa23.56■■□□□ 1.36
SMIM11A-204ENST00000474455 PCDHA4Q9UN74 947 aa23.56■■□□□ 1.36
SMIM11A-204ENST00000474455 UNCXA6NJT0 531 aa23.56■■□□□ 1.36
SMIM11A-204ENST00000474455 USP17L15C9J2P7 530 aa23.56■■□□□ 1.36
SMIM11A-204ENST00000474455 USP17L13C9JLJ4 530 aa23.56■■□□□ 1.36
SMIM11A-204ENST00000474455 USP17L11C9JVI0 530 aa23.56■■□□□ 1.36
SMIM11A-204ENST00000474455 USP17L18D6R9N7 530 aa23.56■■□□□ 1.36
SMIM11A-204ENST00000474455 USP17L22D6RA61 530 aa23.56■■□□□ 1.36
SMIM11A-204ENST00000474455 USP17L17D6RBQ6 530 aa23.56■■□□□ 1.36
SMIM11A-204ENST00000474455 USP17L19D6RCP7 530 aa23.56■■□□□ 1.36
SMIM11A-204ENST00000474455 USP17L20D6RJB6 530 aa23.56■■□□□ 1.36
SMIM11A-204ENST00000474455 M0R2N6 131 aa23.56■■□□□ 1.36
SMIM11A-204ENST00000474455 DSG3P32926 999 aa23.56■■□□□ 1.36
SMIM11A-204ENST00000474455 CEBPZQ03701 1054 aaKnown RBP23.56■■□□□ 1.36
SMIM11A-204ENST00000474455 USP17L24Q0WX57 530 aa23.56■■□□□ 1.36
SMIM11A-204ENST00000474455 SNW1Q13573 536 aaKnown RBP23.56■■□□□ 1.36
SMIM11A-204ENST00000474455 MS4A4AQ96JQ5 239 aa23.56■■□□□ 1.36
SMIM11A-204ENST00000474455 FOXP1Q9H334 677 aaPredicted RBP23.56■■□□□ 1.36
SMIM11A-204ENST00000474455 RAVER2Q9HCJ3 691 aaKnown RBP23.56■■□□□ 1.36
SMIM11A-204ENST00000474455 IMPACTQ9P2X3 320 aa23.56■■□□□ 1.36
SMIM11A-204ENST00000474455 TOMM70O94826 608 aa23.55■■□□□ 1.36
SMIM11A-204ENST00000474455 COG2Q14746 738 aa23.55■■□□□ 1.36
SMIM11A-204ENST00000474455 GPAT2Q6NUI2 795 aa23.55■■□□□ 1.36
SMIM11A-204ENST00000474455 NYAP1Q6ZVC0 841 aa23.55■■□□□ 1.36
SMIM11A-204ENST00000474455 NOSTRINQ8IVI9 506 aa23.55■■□□□ 1.36
SMIM11A-204ENST00000474455 CCDC148Q8NFR7 591 aa23.55■■□□□ 1.36
SMIM11A-204ENST00000474455 SLC38A10Q9HBR0 1119 aa23.55■■□□□ 1.36
SMIM11A-204ENST00000474455 PCDHA6Q9UN73 950 aa23.55■■□□□ 1.36
SMIM11A-204ENST00000474455 PCDHA8Q9Y5H6 950 aa23.55■■□□□ 1.36
SMIM11A-204ENST00000474455 MYH7BA7E2Y1 1941 aa23.55■■□□□ 1.36
SMIM11A-204ENST00000474455 A0A1W2PQ27 194 aa23.54■■□□□ 1.36
SMIM11A-204ENST00000474455 A0A1W2PQ64 194 aa23.54■■□□□ 1.36
SMIM11A-204ENST00000474455 A0A1W2PQD8 194 aa23.54■■□□□ 1.36
SMIM11A-204ENST00000474455 VWA5AO00534 786 aa23.54■■□□□ 1.36
SMIM11A-204ENST00000474455 OPLAHO14841 1288 aa23.54■■□□□ 1.36
SMIM11A-204ENST00000474455 MYSM1Q5VVJ2 828 aa23.54■■□□□ 1.36
SMIM11A-204ENST00000474455 SPRYD7Q5W111 196 aa23.54■■□□□ 1.36
SMIM11A-204ENST00000474455 PROCA1Q8NCQ7 364 aaPredicted RBP23.54■■□□□ 1.36
SMIM11A-204ENST00000474455 BPIFA3Q9BQP9 254 aa23.54■■□□□ 1.36
SMIM11A-204ENST00000474455 TMEM260Q9NX78 707 aa23.54■■□□□ 1.36
SMIM11A-204ENST00000474455 BIN2Q9UBW5 565 aaPredicted RBP23.54■■□□□ 1.36
SMIM11A-204ENST00000474455 SNAPC2Q13487 334 aa23.53■■□□□ 1.36
SMIM11A-204ENST00000474455 PTPN14Q15678 1187 aa23.53■■□□□ 1.36
SMIM11A-204ENST00000474455 UBE2SQ16763 222 aa23.53■■□□□ 1.36
SMIM11A-204ENST00000474455 DHX40Q8IX18 779 aaKnown RBP23.53■■□□□ 1.36
SMIM11A-204ENST00000474455 TBC1D5Q92609 795 aa23.53■■□□□ 1.36
SMIM11A-204ENST00000474455 SPDYE16A6NNV3 312 aaPredicted RBP23.53■■□□□ 1.36
SMIM11A-204ENST00000474455 hCG_1984214I3L0E3 225 aa23.53■■□□□ 1.36
SMIM11A-204ENST00000474455 WNT7AO00755 349 aa23.53■■□□□ 1.36
SMIM11A-204ENST00000474455 TOB1P50616 345 aaPredicted RBP23.53■■□□□ 1.36
SMIM11A-204ENST00000474455 BRAPQ7Z569 592 aa23.53■■□□□ 1.36
SMIM11A-204ENST00000474455 ZNF713Q8N859 430 aaPredicted RBP23.53■■□□□ 1.36
SMIM11A-204ENST00000474455 USP28Q96RU2 1077 aa23.53■■□□□ 1.36
SMIM11A-204ENST00000474455 P2RX7Q99572 595 aaKnown RBP23.53■■□□□ 1.36
SMIM11A-204ENST00000474455 GOLPH3LQ9H4A5 285 aa23.53■■□□□ 1.36
SMIM11A-204ENST00000474455 TUBB4AP04350 444 aa23.52■■□□□ 1.36
SMIM11A-204ENST00000474455 SKILP12757 684 aa23.52■■□□□ 1.36
SMIM11A-204ENST00000474455 CALML3P27482 149 aa23.52■■□□□ 1.36
SMIM11A-204ENST00000474455 ZNF157P51786 506 aaPredicted RBP23.52■■□□□ 1.36
SMIM11A-204ENST00000474455 GABPB1Q06547 395 aaPredicted RBP23.52■■□□□ 1.36
SMIM11A-204ENST00000474455 USP17L6PQ6QN14 398 aa23.52■■□□□ 1.36
SMIM11A-204ENST00000474455 PIK3AP1Q6ZUJ8 805 aa23.52■■□□□ 1.36
SMIM11A-204ENST00000474455 REPS2Q8NFH8 660 aa23.52■■□□□ 1.36
SMIM11A-204ENST00000474455 CCDC12Q8WUD4 166 aaPredicted RBP23.52■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms