RNA–Protein interactions for RNA: ENST00000474048.1

PRPF38A-202, Transcript of pre-mRNA processing factor 38A, humanhuman

TSL 1 (best)

Gene PRPF38A, Length 1,059 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF38A-202ENST00000474048 SYAP1Q96A49 352 aaPredicted RBP11.7□□□□□ -0.54
PRPF38A-202ENST00000474048 USP28Q96RU2 1077 aa11.7□□□□□ -0.54
PRPF38A-202ENST00000474048 MPHOSPH6Q99547 160 aaKnown RBP11.7□□□□□ -0.54
PRPF38A-202ENST00000474048 ANP32EQ9BTT0 268 aa11.7□□□□□ -0.54
PRPF38A-202ENST00000474048 ANO3Q9BYT9 981 aa11.7□□□□□ -0.54
PRPF38A-202ENST00000474048 GDPD2Q9HCC8 539 aa11.7□□□□□ -0.54
PRPF38A-202ENST00000474048 MAP3K20Q9NYL2 800 aaKnown RBP11.7□□□□□ -0.54
PRPF38A-202ENST00000474048 RTEL1Q9NZ71 1219 aa11.7□□□□□ -0.54
PRPF38A-202ENST00000474048 RABGAP1Q9Y3P9 1069 aa11.7□□□□□ -0.54
PRPF38A-202ENST00000474048 DDX49Q9Y6V7 483 aaKnown RBP11.7□□□□□ -0.54
PRPF38A-202ENST00000474048 CCNT1O60563 726 aaKnown RBP11.69□□□□□ -0.54
PRPF38A-202ENST00000474048 SLC25A27O95847 323 aa11.69□□□□□ -0.54
PRPF38A-202ENST00000474048 GCFC2P16383 781 aaKnown RBP11.69□□□□□ -0.54
PRPF38A-202ENST00000474048 MCM7P33993 719 aa11.69□□□□□ -0.54
PRPF38A-202ENST00000474048 GJA5P36382 358 aa11.69□□□□□ -0.54
PRPF38A-202ENST00000474048 GCLCP48506 637 aaPredicted RBP11.69□□□□□ -0.54
PRPF38A-202ENST00000474048 UBE2HP62256 183 aa11.69□□□□□ -0.54
PRPF38A-202ENST00000474048 USP17L6PQ6QN14 398 aa11.69□□□□□ -0.54
PRPF38A-202ENST00000474048 RNF207Q6ZRF8 634 aa11.69□□□□□ -0.54
PRPF38A-202ENST00000474048 CCDC73Q6ZRK6 1079 aa11.69□□□□□ -0.54
PRPF38A-202ENST00000474048 NCAPG2Q86XI2 1143 aa11.69□□□□□ -0.54
PRPF38A-202ENST00000474048 ZNF784Q8NCA9 323 aaPredicted RBP11.69□□□□□ -0.54
PRPF38A-202ENST00000474048 CHST13Q8NET6 341 aa11.69□□□□□ -0.54
PRPF38A-202ENST00000474048 LEO1Q8WVC0 666 aaPredicted RBP11.69□□□□□ -0.54
PRPF38A-202ENST00000474048 TMEM260Q9NX78 707 aa11.69□□□□□ -0.54
PRPF38A-202ENST00000474048 A0A0G2JMZ2 1700 aa11.69□□□□□ -0.54
PRPF38A-202ENST00000474048 PFASO15067 1338 aa11.68□□□□□ -0.54
PRPF38A-202ENST00000474048 B4DLN1 442 aa11.68□□□□□ -0.54
PRPF38A-202ENST00000474048 BTBD19C9JJ37 291 aa11.68□□□□□ -0.54
PRPF38A-202ENST00000474048 PIK3CDO00329 1044 aa11.68□□□□□ -0.54
PRPF38A-202ENST00000474048 LAD1O00515 517 aa11.68□□□□□ -0.54
PRPF38A-202ENST00000474048 ATP2A1O14983 1001 aa11.68□□□□□ -0.54
PRPF38A-202ENST00000474048 NEMFO60524 1076 aa11.68□□□□□ -0.54
PRPF38A-202ENST00000474048 SLC10A3P09131 477 aa11.68□□□□□ -0.54
PRPF38A-202ENST00000474048 HOXA13P31271 388 aaPredicted RBP11.68□□□□□ -0.54
PRPF38A-202ENST00000474048 TXLNAP40222 546 aa11.68□□□□□ -0.54
PRPF38A-202ENST00000474048 NASPP49321 788 aaPredicted RBP11.68□□□□□ -0.54
PRPF38A-202ENST00000474048 TMEM266Q2M3C6 531 aa11.68□□□□□ -0.54
PRPF38A-202ENST00000474048 LBX2Q6XYB7 198 aa11.68□□□□□ -0.54
PRPF38A-202ENST00000474048 ANKRD35Q8N283 1001 aa11.68□□□□□ -0.54
PRPF38A-202ENST00000474048 TMEM87AQ8NBN3 555 aa11.68□□□□□ -0.54
PRPF38A-202ENST00000474048 HHIPL1Q96JK4 782 aa11.68□□□□□ -0.54
PRPF38A-202ENST00000474048 P2RX7Q99572 595 aaKnown RBP11.68□□□□□ -0.54
PRPF38A-202ENST00000474048 RAB34Q9BZG1 259 aa11.68□□□□□ -0.54
PRPF38A-202ENST00000474048 MAF1Q9H063 256 aa11.68□□□□□ -0.54
PRPF38A-202ENST00000474048 TCEAL9Q9UHQ7 104 aa11.68□□□□□ -0.54
PRPF38A-202ENST00000474048 CLIC4Q9Y696 253 aa11.68□□□□□ -0.54
PRPF38A-202ENST00000474048 IVNS1ABPQ9Y6Y0 642 aa11.68□□□□□ -0.54
PRPF38A-202ENST00000474048 ZNF536O15090 1300 aa11.67□□□□□ -0.54
PRPF38A-202ENST00000474048 PPP6R2O75170 966 aa11.67□□□□□ -0.54
PRPF38A-202ENST00000474048 TMEM132BQ14DG7 1078 aa11.67□□□□□ -0.54
PRPF38A-202ENST00000474048 SLC39A14Q15043 492 aa11.67□□□□□ -0.54
PRPF38A-202ENST00000474048 TAF1CQ15572 869 aaPredicted RBP11.67□□□□□ -0.54
PRPF38A-202ENST00000474048 ZNF174Q15697 407 aa11.67□□□□□ -0.54
PRPF38A-202ENST00000474048 NPY5RQ15761 445 aa11.67□□□□□ -0.54
PRPF38A-202ENST00000474048 RIOX2Q8IUF8 465 aa11.67□□□□□ -0.54
PRPF38A-202ENST00000474048 KRI1Q8N9T8 703 aaKnown RBP11.67□□□□□ -0.54
PRPF38A-202ENST00000474048 LINC00301Q8NCQ3 95 aa11.67□□□□□ -0.54
PRPF38A-202ENST00000474048 RASSF8Q8NHQ8 419 aa11.67□□□□□ -0.54
PRPF38A-202ENST00000474048 BRI3BPQ8WY22 251 aa11.67□□□□□ -0.54
PRPF38A-202ENST00000474048 TNFRSF25Q93038 417 aa11.67□□□□□ -0.54
PRPF38A-202ENST00000474048 SHISA4Q96DD7 197 aa11.67□□□□□ -0.54
PRPF38A-202ENST00000474048 CCDC34Q96HJ3 373 aa11.67□□□□□ -0.54
PRPF38A-202ENST00000474048 PGBD1Q96JS3 809 aa11.67□□□□□ -0.54
PRPF38A-202ENST00000474048 SPATC1LQ9H0A9 340 aa11.67□□□□□ -0.54
PRPF38A-202ENST00000474048 ZCCHC17Q9NP64 241 aaKnown RBP11.67□□□□□ -0.54
PRPF38A-202ENST00000474048 ZNF214Q9UL59 606 aaPredicted RBP11.67□□□□□ -0.54
PRPF38A-202ENST00000474048 ADAMTS5Q9UNA0 930 aa11.67□□□□□ -0.54
PRPF38A-202ENST00000474048 PCDHB6Q9Y5E3 794 aa11.67□□□□□ -0.54
PRPF38A-202ENST00000474048 RLFQ13129 1914 aa11.66□□□□□ -0.54
PRPF38A-202ENST00000474048 FAM205CA6NFA0 338 aa11.66□□□□□ -0.54
PRPF38A-202ENST00000474048 M0R2N6 131 aa11.66□□□□□ -0.54
PRPF38A-202ENST00000474048 NFIBO00712 420 aa11.66□□□□□ -0.54
PRPF38A-202ENST00000474048 MEIS2O14770 477 aa11.66□□□□□ -0.54
PRPF38A-202ENST00000474048 CUTAO60888 179 aa11.66□□□□□ -0.54
PRPF38A-202ENST00000474048 MARCKSP29966 332 aaPredicted RBP11.66□□□□□ -0.54
PRPF38A-202ENST00000474048 CLK2P49760 499 aaKnown RBP11.66□□□□□ -0.54
PRPF38A-202ENST00000474048 USP11P51784 963 aa11.66□□□□□ -0.54
PRPF38A-202ENST00000474048 ARHGAP4P98171 946 aa11.66□□□□□ -0.54
PRPF38A-202ENST00000474048 NOGQ13253 232 aa11.66□□□□□ -0.54
PRPF38A-202ENST00000474048 KCTD2Q14681 263 aa11.66□□□□□ -0.54
PRPF38A-202ENST00000474048 CALCRLQ16602 461 aa11.66□□□□□ -0.54
PRPF38A-202ENST00000474048 ARHGEF16Q5VV41 709 aa11.66□□□□□ -0.54
PRPF38A-202ENST00000474048 GPAT2Q6NUI2 795 aa11.66□□□□□ -0.54
PRPF38A-202ENST00000474048 REM2Q8IYK8 340 aaPredicted RBP11.66□□□□□ -0.54
PRPF38A-202ENST00000474048 GPRC5AQ8NFJ5 357 aa11.66□□□□□ -0.54
PRPF38A-202ENST00000474048 FERMT2Q96AC1 680 aa11.66□□□□□ -0.54
PRPF38A-202ENST00000474048 CHAMP1Q96JM3 812 aa11.66□□□□□ -0.54
PRPF38A-202ENST00000474048 MS4A4AQ96JQ5 239 aa11.66□□□□□ -0.54
PRPF38A-202ENST00000474048 FTOQ9C0B1 505 aaKnown RBP eCLIP11.66□□□□□ -0.54
PRPF38A-202ENST00000474048 MROH8Q9H579 483 aa11.66□□□□□ -0.54
PRPF38A-202ENST00000474048 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.66□□□□□ -0.54
PRPF38A-202ENST00000474048 CREBZFQ9NS37 354 aa11.66□□□□□ -0.54
PRPF38A-202ENST00000474048 FAM13BQ9NYF5 915 aa11.66□□□□□ -0.54
PRPF38A-202ENST00000474048 DDX25Q9UHL0 483 aaKnown RBP11.66□□□□□ -0.54
PRPF38A-202ENST00000474048 RCOR1Q9UKL0 485 aa11.66□□□□□ -0.54
PRPF38A-202ENST00000474048 ALDH1A1P00352 501 aa11.65□□□□□ -0.54
PRPF38A-202ENST00000474048 OR52Z1P0C646 297 aa11.65□□□□□ -0.54
PRPF38A-202ENST00000474048 CYP2C8P10632 490 aa11.65□□□□□ -0.54
PRPF38A-202ENST00000474048 TAL1P17542 331 aaPredicted RBP11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms