RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 CLEC4DQ8WXI8 215 aa18.39■□□□□ 0.53
CCDC88B-205ENST00000472524 ANKS1AQ92625 1134 aa18.39■□□□□ 0.53
CCDC88B-205ENST00000472524 TBX21Q9UL17 535 aa18.39■□□□□ 0.53
CCDC88B-205ENST00000472524 PNMA2Q9UL42 364 aa18.39■□□□□ 0.53
CCDC88B-205ENST00000472524 WDR19Q8NEZ3 1342 aa18.39■□□□□ 0.53
CCDC88B-205ENST00000472524 TIMP1P01033 207 aa18.38■□□□□ 0.53
CCDC88B-205ENST00000472524 PTGS1P23219 599 aa18.38■□□□□ 0.53
CCDC88B-205ENST00000472524 ALDH5A1P51649 535 aaPredicted RBP18.38■□□□□ 0.53
CCDC88B-205ENST00000472524 BEX3Q00994 111 aa18.38■□□□□ 0.53
CCDC88B-205ENST00000472524 CDC37Q16543 378 aaPredicted RBP18.38■□□□□ 0.53
CCDC88B-205ENST00000472524 ASPRV1Q53RT3 343 aa18.38■□□□□ 0.53
CCDC88B-205ENST00000472524 GNASQ5JWF2 1037 aa18.38■□□□□ 0.53
CCDC88B-205ENST00000472524 IFIT1BQ5T764 474 aaKnown RBP18.38■□□□□ 0.53
CCDC88B-205ENST00000472524 RNF207Q6ZRF8 634 aa18.38■□□□□ 0.53
CCDC88B-205ENST00000472524 CYB5R4Q7L1T6 521 aa18.38■□□□□ 0.53
CCDC88B-205ENST00000472524 TLK2Q86UE8 772 aa18.38■□□□□ 0.53
CCDC88B-205ENST00000472524 PCSK9Q8NBP7 692 aaKnown RBP18.38■□□□□ 0.53
CCDC88B-205ENST00000472524 VTI1AQ96AJ9 217 aa18.38■□□□□ 0.53
CCDC88B-205ENST00000472524 GLT1D1Q96MS3 346 aa18.38■□□□□ 0.53
CCDC88B-205ENST00000472524 PDGFCQ9NRA1 345 aa18.38■□□□□ 0.53
CCDC88B-205ENST00000472524 ADD3Q9UEY8 706 aaKnown RBP18.38■□□□□ 0.53
CCDC88B-205ENST00000472524 CTAGE5O15320 804 aa18.37■□□□□ 0.53
CCDC88B-205ENST00000472524 DHX16O60231 1041 aaKnown RBP18.37■□□□□ 0.53
CCDC88B-205ENST00000472524 CYP21A2P08686 494 aa18.37■□□□□ 0.53
CCDC88B-205ENST00000472524 PARP1P09874 1014 aaKnown RBP18.37■□□□□ 0.53
CCDC88B-205ENST00000472524 CDK7P50613 346 aa18.37■□□□□ 0.53
CCDC88B-205ENST00000472524 TRDNQ13061 729 aa18.37■□□□□ 0.53
CCDC88B-205ENST00000472524 ADGRF4Q8IZF3 695 aa18.37■□□□□ 0.53
CCDC88B-205ENST00000472524 VTA1Q9NP79 307 aa18.37■□□□□ 0.53
CCDC88B-205ENST00000472524 U3KPZ7 1027 aaPredicted RBP18.37■□□□□ 0.53
CCDC88B-205ENST00000472524 ELP1O95163 1332 aa18.37■□□□□ 0.53
CCDC88B-205ENST00000472524 KIAA1217Q5T5P2 1943 aa18.37■□□□□ 0.53
CCDC88B-205ENST00000472524 SGSM2O43147 1006 aa18.36■□□□□ 0.53
CCDC88B-205ENST00000472524 SMPD1P17405 629 aa18.36■□□□□ 0.53
CCDC88B-205ENST00000472524 RPS6P62753 249 aaKnown RBP18.36■□□□□ 0.53
CCDC88B-205ENST00000472524 TAPT1Q6NXT6 567 aa18.36■□□□□ 0.53
CCDC88B-205ENST00000472524 KIAA1211Q6ZU35 1233 aa18.36■□□□□ 0.53
CCDC88B-205ENST00000472524 MORC4Q8TE76 937 aa18.36■□□□□ 0.53
CCDC88B-205ENST00000472524 AP5M1Q9H0R1 490 aa18.36■□□□□ 0.53
CCDC88B-205ENST00000472524 VAT1LQ9HCJ6 419 aa18.36■□□□□ 0.53
CCDC88B-205ENST00000472524 GNEQ9Y223 722 aaKnown RBP18.36■□□□□ 0.53
CCDC88B-205ENST00000472524 PRUNE2Q8WUY3 3088 aa18.36■□□□□ 0.53
CCDC88B-205ENST00000472524 ARVCFO00192 962 aa18.35■□□□□ 0.53
CCDC88B-205ENST00000472524 DYNC1LI2O43237 492 aaPredicted RBP18.35■□□□□ 0.53
CCDC88B-205ENST00000472524 FOSL2P15408 326 aa18.35■□□□□ 0.53
CCDC88B-205ENST00000472524 SEC23AQ15436 765 aa18.35■□□□□ 0.53
CCDC88B-205ENST00000472524 TMEM63BQ5T3F8 832 aa18.35■□□□□ 0.53
CCDC88B-205ENST00000472524 IQSEC1Q6DN90 963 aa18.35■□□□□ 0.53
CCDC88B-205ENST00000472524 C16orf59Q7L2K0 433 aa18.35■□□□□ 0.53
CCDC88B-205ENST00000472524 BUD13Q9BRD0 619 aaKnown RBP eCLIP18.35■□□□□ 0.53
CCDC88B-205ENST00000472524 TAF6LQ9Y6J9 622 aa18.35■□□□□ 0.53
CCDC88B-205ENST00000472524 MROH7Q68CQ1 1323 aa18.34■□□□□ 0.53
CCDC88B-205ENST00000472524 A0A0U1RQG5 324 aaPredicted RBP18.34■□□□□ 0.53
CCDC88B-205ENST00000472524 DNAJB2P25686 324 aa18.34■□□□□ 0.53
CCDC88B-205ENST00000472524 GRIN2CQ14957 1233 aa18.34■□□□□ 0.53
CCDC88B-205ENST00000472524 QRICH1Q2TAL8 776 aa18.34■□□□□ 0.53
CCDC88B-205ENST00000472524 MFSD5Q6N075 450 aa18.34■□□□□ 0.53
CCDC88B-205ENST00000472524 RALYLQ86SE5 291 aaKnown RBP18.34■□□□□ 0.53
CCDC88B-205ENST00000472524 FAM126BQ8IXS8 530 aa18.34■□□□□ 0.53
CCDC88B-205ENST00000472524 STAG2Q8N3U4 1231 aa18.34■□□□□ 0.53
CCDC88B-205ENST00000472524 MYH7BA7E2Y1 1941 aa18.33■□□□□ 0.53
CCDC88B-205ENST00000472524 ABCB11O95342 1321 aa18.33■□□□□ 0.53
CCDC88B-205ENST00000472524 TMEM265A0A087WTH1 108 aa18.33■□□□□ 0.52
CCDC88B-205ENST00000472524 HSFX4A0A1B0GTS1 333 aaPredicted RBP18.33■□□□□ 0.52
CCDC88B-205ENST00000472524 HSFX3A0A1B0GWH4 333 aaPredicted RBP18.33■□□□□ 0.52
CCDC88B-205ENST00000472524 E7EWF7 191 aa18.33■□□□□ 0.52
CCDC88B-205ENST00000472524 CSF2RAP15509 400 aa18.33■□□□□ 0.52
CCDC88B-205ENST00000472524 NKX3-2P78367 333 aa18.33■□□□□ 0.52
CCDC88B-205ENST00000472524 PDE4DQ08499 809 aa18.33■□□□□ 0.52
CCDC88B-205ENST00000472524 FSCN1Q16658 493 aaKnown RBP18.33■□□□□ 0.52
CCDC88B-205ENST00000472524 CXCL17Q6UXB2 119 aa18.33■□□□□ 0.52
CCDC88B-205ENST00000472524 PPP1R12CQ9BZL4 782 aa18.33■□□□□ 0.52
CCDC88B-205ENST00000472524 JMJD4Q9H9V9 463 aa18.33■□□□□ 0.52
CCDC88B-205ENST00000472524 LOC102724159A0A0B4J2E5 919 aa18.32■□□□□ 0.52
CCDC88B-205ENST00000472524 ERICH2A1L162 156 aa18.32■□□□□ 0.52
CCDC88B-205ENST00000472524 IFIT3O14879 490 aaKnown RBP18.32■□□□□ 0.52
CCDC88B-205ENST00000472524 PPIGQ13427 754 aaKnown RBP eCLIP18.32■□□□□ 0.52
CCDC88B-205ENST00000472524 PWP2Q15269 919 aaKnown RBP18.32■□□□□ 0.52
CCDC88B-205ENST00000472524 TMEM240Q5SV17 173 aa18.32■□□□□ 0.52
CCDC88B-205ENST00000472524 STOX1Q6ZVD7 989 aa18.32■□□□□ 0.52
CCDC88B-205ENST00000472524 CHST3Q7LGC8 479 aa18.32■□□□□ 0.52
CCDC88B-205ENST00000472524 FBXO11Q86XK2 927 aa18.32■□□□□ 0.52
CCDC88B-205ENST00000472524 NCOA7Q8NI08 942 aa18.32■□□□□ 0.52
CCDC88B-205ENST00000472524 MPHOSPH6Q99547 160 aaKnown RBP18.32■□□□□ 0.52
CCDC88B-205ENST00000472524 WDR11Q9BZH6 1224 aa18.32■□□□□ 0.52
CCDC88B-205ENST00000472524 RBM8AQ9Y5S9 174 aaKnown RBP18.32■□□□□ 0.52
CCDC88B-205ENST00000472524 GRXCR1A8MXD5 290 aa18.31■□□□□ 0.52
CCDC88B-205ENST00000472524 KLRF2D3W0D1 207 aa18.31■□□□□ 0.52
CCDC88B-205ENST00000472524 ZEB2O60315 1214 aa18.31■□□□□ 0.52
CCDC88B-205ENST00000472524 ACRP10323 421 aa18.31■□□□□ 0.52
CCDC88B-205ENST00000472524 DUSP28Q4G0W2 176 aa18.31■□□□□ 0.52
CCDC88B-205ENST00000472524 SKAP1Q86WV1 359 aa18.31■□□□□ 0.52
CCDC88B-205ENST00000472524 DNERQ8NFT8 737 aa18.31■□□□□ 0.52
CCDC88B-205ENST00000472524 TBC1D5Q92609 795 aa18.31■□□□□ 0.52
CCDC88B-205ENST00000472524 TIFAQ96CG3 184 aa18.31■□□□□ 0.52
CCDC88B-205ENST00000472524 SENP2Q9HC62 589 aa18.31■□□□□ 0.52
CCDC88B-205ENST00000472524 MAD2L2Q9UI95 211 aa18.31■□□□□ 0.52
CCDC88B-205ENST00000472524 CD4P01730 458 aa18.3■□□□□ 0.52
CCDC88B-205ENST00000472524 EDNRBP24530 442 aa18.3■□□□□ 0.52
CCDC88B-205ENST00000472524 CYP2C18P33260 490 aa18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms