RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 CNOT7Q9UIV1 285 aaKnown RBP5.96□□□□□ -1.45
SYNE1-220ENST00000471834 A0A0A6YYK5 440 aaPredicted RBP5.96□□□□□ -1.46
SYNE1-220ENST00000471834 A0A0U1RQJ8 604 aa5.96□□□□□ -1.46
SYNE1-220ENST00000471834 SOWAHDA6NJG2 315 aa5.96□□□□□ -1.46
SYNE1-220ENST00000471834 CCHCR1Q8TD31 782 aa5.96□□□□□ -1.46
SYNE1-220ENST00000471834 ATRIPQ8WXE1 791 aa5.96□□□□□ -1.46
SYNE1-220ENST00000471834 PRKAG2Q9UGJ0 569 aa5.96□□□□□ -1.46
SYNE1-220ENST00000471834 SERTAD1Q9UHV2 236 aa5.96□□□□□ -1.46
SYNE1-220ENST00000471834 CAPN6Q9Y6Q1 641 aa5.96□□□□□ -1.46
SYNE1-220ENST00000471834 CNTNAP5Q8WYK1 1306 aa5.96□□□□□ -1.46
SYNE1-220ENST00000471834 TTF1Q15361 905 aaPredicted RBP5.96□□□□□ -1.46
SYNE1-220ENST00000471834 BMT2Q1RMZ1 405 aa5.96□□□□□ -1.46
SYNE1-220ENST00000471834 TCP11X2Q5H9J9 407 aa5.96□□□□□ -1.46
SYNE1-220ENST00000471834 WDR78Q5VTH9 848 aa5.96□□□□□ -1.46
SYNE1-220ENST00000471834 B4GALNT4Q76KP1 1039 aa5.96□□□□□ -1.46
SYNE1-220ENST00000471834 CYB5R4Q7L1T6 521 aa5.96□□□□□ -1.46
SYNE1-220ENST00000471834 TSEN2Q8NCE0 465 aaKnown RBP5.96□□□□□ -1.46
SYNE1-220ENST00000471834 CDK5RAP3Q96JB5 506 aa5.96□□□□□ -1.46
SYNE1-220ENST00000471834 EPB41L1Q9H4G0 881 aa5.96□□□□□ -1.46
SYNE1-220ENST00000471834 KIAA1551Q9HCM1 1747 aa5.96□□□□□ -1.46
SYNE1-220ENST00000471834 M0R2C6 588 aa5.96□□□□□ -1.46
SYNE1-220ENST00000471834 GNAT2P19087 354 aa5.96□□□□□ -1.46
SYNE1-220ENST00000471834 PNOCQ13519 176 aa5.96□□□□□ -1.46
SYNE1-220ENST00000471834 OTUD7BQ6GQQ9 843 aa5.96□□□□□ -1.46
SYNE1-220ENST00000471834 ZNF34Q8IZ26 560 aa5.96□□□□□ -1.46
SYNE1-220ENST00000471834 ISCUQ9H1K1 167 aa5.96□□□□□ -1.46
SYNE1-220ENST00000471834 PDLIM1O00151 329 aa5.96□□□□□ -1.46
SYNE1-220ENST00000471834 EBAG9O00559 213 aa5.96□□□□□ -1.46
SYNE1-220ENST00000471834 GPAA1O43292 621 aa5.96□□□□□ -1.46
SYNE1-220ENST00000471834 TTC31Q49AM3 519 aaPredicted RBP5.96□□□□□ -1.46
SYNE1-220ENST00000471834 ERMARDQ5T6L9 678 aa5.96□□□□□ -1.46
SYNE1-220ENST00000471834 MB21D1Q8N884 522 aa5.96□□□□□ -1.46
SYNE1-220ENST00000471834 AK8Q96MA6 479 aa5.96□□□□□ -1.46
SYNE1-220ENST00000471834 LARP6Q9BRS8 491 aaKnown RBP5.96□□□□□ -1.46
SYNE1-220ENST00000471834 FRMPD4Q14CM0 1322 aa5.96□□□□□ -1.46
SYNE1-220ENST00000471834 MPHOSPH10O00566 681 aaKnown RBP5.95□□□□□ -1.46
SYNE1-220ENST00000471834 MAGEB2O15479 319 aa5.95□□□□□ -1.46
SYNE1-220ENST00000471834 CSDE1O75534 798 aaKnown RBP5.95□□□□□ -1.46
SYNE1-220ENST00000471834 PDE8BO95263 885 aa5.95□□□□□ -1.46
SYNE1-220ENST00000471834 TFRCP02786 760 aaKnown RBP5.95□□□□□ -1.46
SYNE1-220ENST00000471834 UQCRFS1P1P0C7P4 283 aa5.95□□□□□ -1.46
SYNE1-220ENST00000471834 ELF1P32519 619 aa5.95□□□□□ -1.46
SYNE1-220ENST00000471834 CPLX2Q6PUV4 134 aaKnown RBP5.95□□□□□ -1.46
SYNE1-220ENST00000471834 C15orf52Q6ZUT6 534 aaKnown RBP5.95□□□□□ -1.46
SYNE1-220ENST00000471834 C7orf43Q8WVR3 580 aa5.95□□□□□ -1.46
SYNE1-220ENST00000471834 NUCKS1Q9H1E3 243 aaKnown RBP5.95□□□□□ -1.46
SYNE1-220ENST00000471834 STXBP5LQ9Y2K9 1186 aa5.95□□□□□ -1.46
SYNE1-220ENST00000471834 CACNA1SQ13698 1873 aa5.95□□□□□ -1.46
SYNE1-220ENST00000471834 POTEFA5A3E0 1075 aa5.95□□□□□ -1.46
SYNE1-220ENST00000471834 E7ENQ6 273 aa5.95□□□□□ -1.46
SYNE1-220ENST00000471834 DDAH1O94760 285 aa5.95□□□□□ -1.46
SYNE1-220ENST00000471834 POTEIP0CG38 1075 aa5.95□□□□□ -1.46
SYNE1-220ENST00000471834 POTEJP0CG39 1038 aa5.95□□□□□ -1.46
SYNE1-220ENST00000471834 MCAMP43121 646 aa5.95□□□□□ -1.46
SYNE1-220ENST00000471834 KIF22Q14807 665 aa5.95□□□□□ -1.46
SYNE1-220ENST00000471834 POTEEQ6S8J3 1075 aa5.95□□□□□ -1.46
SYNE1-220ENST00000471834 CCDC129Q6ZRS4 1044 aa5.95□□□□□ -1.46
SYNE1-220ENST00000471834 DDX46Q7L014 1031 aaKnown RBP5.95□□□□□ -1.46
SYNE1-220ENST00000471834 CCDC84Q86UT8 332 aaPredicted RBP5.95□□□□□ -1.46
SYNE1-220ENST00000471834 ATL2Q8NHH9 583 aa5.95□□□□□ -1.46
SYNE1-220ENST00000471834 CDC5LQ99459 802 aaKnown RBP5.95□□□□□ -1.46
SYNE1-220ENST00000471834 MMTAG2Q9BU76 263 aaKnown RBP5.95□□□□□ -1.46
SYNE1-220ENST00000471834 COL5A2P05997 1499 aaPredicted RBP5.95□□□□□ -1.46
SYNE1-220ENST00000471834 CCDC188H7C350 402 aa5.95□□□□□ -1.46
SYNE1-220ENST00000471834 IPO7O95373 1038 aaKnown RBP5.95□□□□□ -1.46
SYNE1-220ENST00000471834 BLMHQ13867 455 aa5.95□□□□□ -1.46
SYNE1-220ENST00000471834 GRIPAP1Q4V328 841 aa5.95□□□□□ -1.46
SYNE1-220ENST00000471834 CCDC148Q8NFR7 591 aa5.95□□□□□ -1.46
SYNE1-220ENST00000471834 ZNF384Q8TF68 577 aa5.95□□□□□ -1.46
SYNE1-220ENST00000471834 TCP11Q8WWU5 503 aa5.95□□□□□ -1.46
SYNE1-220ENST00000471834 L3MBTL3Q96JM7 780 aaPredicted RBP5.95□□□□□ -1.46
SYNE1-220ENST00000471834 ALG1Q9BT22 464 aa5.95□□□□□ -1.46
SYNE1-220ENST00000471834 ZDHHC18Q9NUE0 388 aa5.95□□□□□ -1.46
SYNE1-220ENST00000471834 FAM205AQ6ZU69 1335 aa5.95□□□□□ -1.46
SYNE1-220ENST00000471834 ANKRD18BA2A2Z9 1011 aa5.95□□□□□ -1.46
SYNE1-220ENST00000471834 GTPBP10A4D1E9 387 aaKnown RBP5.95□□□□□ -1.46
SYNE1-220ENST00000471834 SLC5A9Q2M3M2 681 aa5.95□□□□□ -1.46
SYNE1-220ENST00000471834 DAB2IPQ5VWQ8 1189 aa5.95□□□□□ -1.46
SYNE1-220ENST00000471834 TRIM59Q8IWR1 403 aa5.95□□□□□ -1.46
SYNE1-220ENST00000471834 PRR29P0C7W0 189 aa5.95□□□□□ -1.46
SYNE1-220ENST00000471834 LSP1P33241 339 aa5.95□□□□□ -1.46
SYNE1-220ENST00000471834 MATR3P43243 847 aaKnown RBP eCLIP5.95□□□□□ -1.46
SYNE1-220ENST00000471834 MEI1Q5TIA1 1274 aa5.95□□□□□ -1.46
SYNE1-220ENST00000471834 KLHDC7AQ5VTJ3 777 aa5.95□□□□□ -1.46
SYNE1-220ENST00000471834 C12orf50Q8NA57 414 aaPredicted RBP5.95□□□□□ -1.46
SYNE1-220ENST00000471834 IRGQQ8WZA9 623 aa5.95□□□□□ -1.46
SYNE1-220ENST00000471834 ARL8AQ96BM9 186 aa5.95□□□□□ -1.46
SYNE1-220ENST00000471834 ATP6V1G3Q96LB4 118 aa5.95□□□□□ -1.46
SYNE1-220ENST00000471834 PLCD4Q9BRC7 762 aa5.95□□□□□ -1.46
SYNE1-220ENST00000471834 DEFB129Q9H1M3 183 aa5.95□□□□□ -1.46
SYNE1-220ENST00000471834 PCDHB6Q9Y5E3 794 aa5.95□□□□□ -1.46
SYNE1-220ENST00000471834 KRT9P35527 623 aa5.95□□□□□ -1.46
SYNE1-220ENST00000471834 SPRED3Q2MJR0 410 aa5.95□□□□□ -1.46
SYNE1-220ENST00000471834 ENDOVQ8N8Q3 282 aaKnown RBP5.95□□□□□ -1.46
SYNE1-220ENST00000471834 AIFM3Q96NN9 605 aa5.95□□□□□ -1.46
SYNE1-220ENST00000471834 TRIM9Q9C026 710 aa5.95□□□□□ -1.46
SYNE1-220ENST00000471834 TCP11L1Q9NUJ3 509 aa5.95□□□□□ -1.46
SYNE1-220ENST00000471834 LRRC42Q9Y546 428 aa5.95□□□□□ -1.46
SYNE1-220ENST00000471834 SYNRGQ9UMZ2 1314 aa5.95□□□□□ -1.46
SYNE1-220ENST00000471834 TRIM75PA6NK02 468 aa5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms