RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 SLF2Q8IX21 1173 aa21.4■■□□□ 1.02
VIM-203ENST00000469543 MTMR9Q96QG7 549 aa21.4■■□□□ 1.02
VIM-203ENST00000469543 TUBGCP2Q9BSJ2 902 aa21.4■■□□□ 1.02
VIM-203ENST00000469543 NAA15Q9BXJ9 866 aaKnown RBP21.4■■□□□ 1.02
VIM-203ENST00000469543 BLOC1S4Q9NUP1 217 aa21.4■■□□□ 1.02
VIM-203ENST00000469543 LRWD1Q9UFC0 647 aa21.4■■□□□ 1.02
VIM-203ENST00000469543 TPM1P09493 284 aa21.4■■□□□ 1.02
VIM-203ENST00000469543 SRGNP10124 158 aa21.4■■□□□ 1.02
VIM-203ENST00000469543 NOVP48745 357 aa21.4■■□□□ 1.02
VIM-203ENST00000469543 SPAG1Q07617 926 aa21.4■■□□□ 1.02
VIM-203ENST00000469543 CALCRLQ16602 461 aa21.4■■□□□ 1.02
VIM-203ENST00000469543 WDR59Q6PJI9 974 aa21.4■■□□□ 1.02
VIM-203ENST00000469543 MYMKA6NI61 221 aa21.39■■□□□ 1.01
VIM-203ENST00000469543 KIF5CO60282 957 aa21.39■■□□□ 1.01
VIM-203ENST00000469543 ARHGAP25P42331 645 aa21.39■■□□□ 1.01
VIM-203ENST00000469543 SNAP25P60880 206 aa21.39■■□□□ 1.01
VIM-203ENST00000469543 APOBEC3HQ6NTF7 200 aaKnown RBP21.39■■□□□ 1.01
VIM-203ENST00000469543 PNMA5Q96PV4 448 aa21.39■■□□□ 1.01
VIM-203ENST00000469543 EXOC1Q9NV70 894 aa21.39■■□□□ 1.01
VIM-203ENST00000469543 PRDM4Q9UKN5 801 aa21.39■■□□□ 1.01
VIM-203ENST00000469543 TRPC5Q9UL62 973 aaPredicted RBP21.39■■□□□ 1.01
VIM-203ENST00000469543 LRRC41Q15345 812 aa21.39■■□□□ 1.01
VIM-203ENST00000469543 SEMA6BQ9H3T3 888 aa21.39■■□□□ 1.01
VIM-203ENST00000469543 KLRG2A4D1S0 409 aaPredicted RBP21.38■■□□□ 1.01
VIM-203ENST00000469543 LGALS16A8MUM7 142 aa21.38■■□□□ 1.01
VIM-203ENST00000469543 USP17L15C9J2P7 530 aa21.38■■□□□ 1.01
VIM-203ENST00000469543 USP17L13C9JLJ4 530 aa21.38■■□□□ 1.01
VIM-203ENST00000469543 USP17L11C9JVI0 530 aa21.38■■□□□ 1.01
VIM-203ENST00000469543 USP17L18D6R9N7 530 aa21.38■■□□□ 1.01
VIM-203ENST00000469543 USP17L22D6RA61 530 aa21.38■■□□□ 1.01
VIM-203ENST00000469543 USP17L17D6RBQ6 530 aa21.38■■□□□ 1.01
VIM-203ENST00000469543 USP17L19D6RCP7 530 aa21.38■■□□□ 1.01
VIM-203ENST00000469543 USP17L20D6RJB6 530 aa21.38■■□□□ 1.01
VIM-203ENST00000469543 TAL1P17542 331 aaPredicted RBP21.38■■□□□ 1.01
VIM-203ENST00000469543 ADCY7P51828 1080 aa21.38■■□□□ 1.01
VIM-203ENST00000469543 USP17L24Q0WX57 530 aa21.38■■□□□ 1.01
VIM-203ENST00000469543 USP17L6PQ6QN14 398 aa21.38■■□□□ 1.01
VIM-203ENST00000469543 COL23A1Q86Y22 540 aaPredicted RBP21.38■■□□□ 1.01
VIM-203ENST00000469543 TMTC1Q8IUR5 882 aa21.38■■□□□ 1.01
VIM-203ENST00000469543 GUCA1BQ9UMX6 200 aa21.38■■□□□ 1.01
VIM-203ENST00000469543 ENC1O14682 589 aa21.38■■□□□ 1.01
VIM-203ENST00000469543 TTLL1O95922 423 aa21.38■■□□□ 1.01
VIM-203ENST00000469543 CCDC96Q2M329 555 aa21.38■■□□□ 1.01
VIM-203ENST00000469543 KIF4BQ2VIQ3 1234 aa21.38■■□□□ 1.01
VIM-203ENST00000469543 CYP26C1Q6V0L0 522 aa21.38■■□□□ 1.01
VIM-203ENST00000469543 P2RX5Q93086 422 aa21.38■■□□□ 1.01
VIM-203ENST00000469543 AK8Q96MA6 479 aa21.38■■□□□ 1.01
VIM-203ENST00000469543 PARD6BQ9BYG5 372 aa21.38■■□□□ 1.01
VIM-203ENST00000469543 COA1Q9GZY4 146 aa21.38■■□□□ 1.01
VIM-203ENST00000469543 IDEP14735 1019 aa21.37■■□□□ 1.01
VIM-203ENST00000469543 KRT222Q8N1A0 295 aa21.37■■□□□ 1.01
VIM-203ENST00000469543 DNAJC18Q9H819 358 aa21.37■■□□□ 1.01
VIM-203ENST00000469543 LUC7L2Q9Y383 392 aaKnown RBP21.37■■□□□ 1.01
VIM-203ENST00000469543 EPN1Q9Y6I3 576 aaPredicted RBP21.37■■□□□ 1.01
VIM-203ENST00000469543 G3V3G9 751 aa21.37■■□□□ 1.01
VIM-203ENST00000469543 PNMA6AP0CW24 399 aaPredicted RBP21.37■■□□□ 1.01
VIM-203ENST00000469543 DMTNQ08495 405 aa21.37■■□□□ 1.01
VIM-203ENST00000469543 ZNF543Q08ER8 600 aa21.37■■□□□ 1.01
VIM-203ENST00000469543 STIM1Q13586 685 aa21.37■■□□□ 1.01
VIM-203ENST00000469543 DCAF8Q5TAQ9 597 aa21.37■■□□□ 1.01
VIM-203ENST00000469543 RSRC2Q7L4I2 434 aaKnown RBP21.37■■□□□ 1.01
VIM-203ENST00000469543 CNOT6LQ96LI5 555 aaKnown RBP21.37■■□□□ 1.01
VIM-203ENST00000469543 ADAMTSL1Q8N6G6 1762 aa21.37■■□□□ 1.01
VIM-203ENST00000469543 IGKV6D-41A0A0C4DH26 115 aa21.36■■□□□ 1.01
VIM-203ENST00000469543 SNHG28P0DPA3 235 aa21.36■■□□□ 1.01
VIM-203ENST00000469543 TBC1D8BQ0IIM8 1120 aa21.36■■□□□ 1.01
VIM-203ENST00000469543 CERS3Q8IU89 383 aa21.36■■□□□ 1.01
VIM-203ENST00000469543 FAM53CQ9NYF3 392 aa21.36■■□□□ 1.01
VIM-203ENST00000469543 SASH3O75995 380 aa21.36■■□□□ 1.01
VIM-203ENST00000469543 NDUFA10O95299 355 aa21.36■■□□□ 1.01
VIM-203ENST00000469543 FECHP22830 423 aa21.36■■□□□ 1.01
VIM-203ENST00000469543 OR8K1Q8NGG5 319 aa21.36■■□□□ 1.01
VIM-203ENST00000469543 CALML4Q96GE6 196 aa21.36■■□□□ 1.01
VIM-203ENST00000469543 C7orf25Q9BPX7 421 aa21.36■■□□□ 1.01
VIM-203ENST00000469543 THAP9Q9H5L6 903 aa21.36■■□□□ 1.01
VIM-203ENST00000469543 MAGEC2Q9UBF1 373 aaPredicted RBP21.36■■□□□ 1.01
VIM-203ENST00000469543 DUSP10Q9Y6W6 482 aa21.36■■□□□ 1.01
VIM-203ENST00000469543 TRIM21P19474 475 aaKnown RBP21.35■■□□□ 1.01
VIM-203ENST00000469543 RAD51AP2Q09MP3 1159 aa21.35■■□□□ 1.01
VIM-203ENST00000469543 ZNF622Q969S3 477 aaKnown RBP eCLIP21.35■■□□□ 1.013e-17■□□□□ 9.6
VIM-203ENST00000469543 PCMTD1Q96MG8 357 aaPredicted RBP21.35■■□□□ 1.01
VIM-203ENST00000469543 HDAC6Q9UBN7 1215 aa21.35■■□□□ 1.01
VIM-203ENST00000469543 DDTLA6NHG4 134 aaPredicted RBP21.35■■□□□ 1.01
VIM-203ENST00000469543 CCNE1P24864 410 aa21.35■■□□□ 1.01
VIM-203ENST00000469543 EEF1GP26641 437 aaKnown RBP21.35■■□□□ 1.01
VIM-203ENST00000469543 RBM5P52756 815 aaKnown RBP eCLIP21.35■■□□□ 1.01
VIM-203ENST00000469543 MIIPQ5JXC2 388 aa21.35■■□□□ 1.01
VIM-203ENST00000469543 SLC27A3Q5K4L6 730 aa21.35■■□□□ 1.01
VIM-203ENST00000469543 KRT27Q7Z3Y8 459 aa21.35■■□□□ 1.01
VIM-203ENST00000469543 HAS1Q92839 578 aa21.35■■□□□ 1.01
VIM-203ENST00000469543 CCDC51Q96ER9 411 aa21.35■■□□□ 1.01
VIM-203ENST00000469543 ZRANB2O95218 330 aaKnown RBP eCLIP21.34■■□□□ 1.01
VIM-203ENST00000469543 NT5C2P49902 561 aa21.34■■□□□ 1.01
VIM-203ENST00000469543 CYP27A1Q02318 531 aa21.34■■□□□ 1.01
VIM-203ENST00000469543 CACNB1Q02641 598 aaPredicted RBP21.34■■□□□ 1.01
VIM-203ENST00000469543 TMCO3Q6UWJ1 677 aa21.34■■□□□ 1.01
VIM-203ENST00000469543 SV2BQ7L1I2 683 aa21.34■■□□□ 1.01
VIM-203ENST00000469543 CCDC155Q8N6L0 562 aa21.34■■□□□ 1.01
VIM-203ENST00000469543 SNX29Q8TEQ0 813 aa21.34■■□□□ 1.01
VIM-203ENST00000469543 DHTKD1Q96HY7 919 aaPredicted RBP21.34■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms