RNA–Protein interactions for RNA: ENST00000465727.5

SDF4-205, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,095 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-205ENST00000465727 TRMT112Q9UI30 125 aaKnown RBP21.92■■□□□ 1.1
SDF4-205ENST00000465727 STARD3NLO95772 234 aa21.92■■□□□ 1.1
SDF4-205ENST00000465727 FGRP09769 529 aa21.92■■□□□ 1.1
SDF4-205ENST00000465727 LSP1P33241 339 aa21.92■■□□□ 1.1
SDF4-205ENST00000465727 MTIF2P46199 727 aaKnown RBP21.92■■□□□ 1.1
SDF4-205ENST00000465727 KIF11P52732 1056 aa21.92■■□□□ 1.1
SDF4-205ENST00000465727 NAP1L1P55209 391 aaKnown RBP21.92■■□□□ 1.1
SDF4-205ENST00000465727 SLC7A5Q01650 507 aa21.92■■□□□ 1.1
SDF4-205ENST00000465727 PAK2Q13177 524 aa21.92■■□□□ 1.1
SDF4-205ENST00000465727 MIIPQ5JXC2 388 aa21.92■■□□□ 1.1
SDF4-205ENST00000465727 CFAP58Q5T655 872 aa21.92■■□□□ 1.1
SDF4-205ENST00000465727 DTHD1Q6ZMT9 781 aa21.92■■□□□ 1.1
SDF4-205ENST00000465727 LRP2BPQ9P2M1 347 aa21.92■■□□□ 1.1
SDF4-205ENST00000465727 PJA2O43164 708 aa21.91■■□□□ 1.1
SDF4-205ENST00000465727 KLK7P49862 253 aa21.91■■□□□ 1.1
SDF4-205ENST00000465727 DRP2Q13474 957 aa21.91■■□□□ 1.1
SDF4-205ENST00000465727 TTC19Q6DKK2 380 aaPredicted RBP21.91■■□□□ 1.1
SDF4-205ENST00000465727 RASSF8Q8NHQ8 419 aa21.91■■□□□ 1.1
SDF4-205ENST00000465727 RABEP2Q9H5N1 569 aa21.91■■□□□ 1.1
SDF4-205ENST00000465727 GDF3Q9NR23 364 aa21.91■■□□□ 1.1
SDF4-205ENST00000465727 MOCS3O95396 460 aa21.91■■□□□ 1.1
SDF4-205ENST00000465727 HLFQ16534 295 aa21.91■■□□□ 1.1
SDF4-205ENST00000465727 CFAP221Q4G0U5 840 aa21.91■■□□□ 1.1
SDF4-205ENST00000465727 NAA35Q5VZE5 725 aa21.91■■□□□ 1.1
SDF4-205ENST00000465727 NFRKBQ6P4R8 1299 aa21.91■■□□□ 1.1
SDF4-205ENST00000465727 SRBD1Q8N5C6 995 aaKnown RBP21.91■■□□□ 1.1
SDF4-205ENST00000465727 HELBQ8NG08 1087 aaPredicted RBP21.91■■□□□ 1.1
SDF4-205ENST00000465727 SMCR8Q8TEV9 937 aaPredicted RBP21.91■■□□□ 1.1
SDF4-205ENST00000465727 ARHGAP20Q9P2F6 1191 aa21.91■■□□□ 1.1
SDF4-205ENST00000465727 SHANK3Q9BYB0 1731 aa21.9■■□□□ 1.1
SDF4-205ENST00000465727 LAD1O00515 517 aa21.9■■□□□ 1.1
SDF4-205ENST00000465727 PPP1R37O75864 691 aa21.9■■□□□ 1.1
SDF4-205ENST00000465727 CHRM1P11229 460 aaPredicted RBP21.9■■□□□ 1.1
SDF4-205ENST00000465727 UBA7P41226 1012 aa21.9■■□□□ 1.1
SDF4-205ENST00000465727 MATR3P43243 847 aaKnown RBP eCLIP21.9■■□□□ 1.1
SDF4-205ENST00000465727 COBLL1Q53SF7 1204 aa21.9■■□□□ 1.1
SDF4-205ENST00000465727 KRT26Q7Z3Y9 468 aa21.9■■□□□ 1.1
SDF4-205ENST00000465727 RNF10Q8N5U6 811 aaKnown RBP21.9■■□□□ 1.1
SDF4-205ENST00000465727 MLXIPQ9HAP2 919 aa21.9■■□□□ 1.1
SDF4-205ENST00000465727 SH3GLB2Q9NR46 395 aa21.9■■□□□ 1.1
SDF4-205ENST00000465727 MYH1P12882 1939 aa21.9■■□□□ 1.1
SDF4-205ENST00000465727 MAGEB6P1A0A0J9YX57 407 aa21.89■■□□□ 1.1
SDF4-205ENST00000465727 CYP7A1P22680 504 aa21.89■■□□□ 1.1
SDF4-205ENST00000465727 TMED8Q6PL24 325 aaPredicted RBP21.89■■□□□ 1.1
SDF4-205ENST00000465727 SDR42E1Q8WUS8 393 aa21.89■■□□□ 1.1
SDF4-205ENST00000465727 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP21.89■■□□□ 1.1
SDF4-205ENST00000465727 BRIP1Q9BX63 1249 aa21.89■■□□□ 1.1
SDF4-205ENST00000465727 HMGB1P1B2RPK0 211 aaPredicted RBP21.89■■□□□ 1.09
SDF4-205ENST00000465727 CCDC172P0C7W6 258 aa21.89■■□□□ 1.09
SDF4-205ENST00000465727 NR1D1P20393 614 aa21.89■■□□□ 1.09
SDF4-205ENST00000465727 TYW1BQ6NUM6 668 aa21.89■■□□□ 1.09
SDF4-205ENST00000465727 C2CD5Q86YS7 1000 aa21.89■■□□□ 1.09
SDF4-205ENST00000465727 BLIDQ8IZY5 108 aa21.89■■□□□ 1.09
SDF4-205ENST00000465727 CABLES1Q8TDN4 633 aa21.89■■□□□ 1.09
SDF4-205ENST00000465727 HINFPQ9BQA5 517 aa21.89■■□□□ 1.09
SDF4-205ENST00000465727 ABCB11O95342 1321 aa21.88■■□□□ 1.09
SDF4-205ENST00000465727 CHUKO15111 745 aa21.88■■□□□ 1.09
SDF4-205ENST00000465727 KRT14P02533 472 aa21.88■■□□□ 1.09
SDF4-205ENST00000465727 PTGISQ16647 500 aa21.88■■□□□ 1.09
SDF4-205ENST00000465727 ANKRD40Q6AI12 368 aa21.88■■□□□ 1.09
SDF4-205ENST00000465727 CCDC84Q86UT8 332 aaPredicted RBP21.88■■□□□ 1.09
SDF4-205ENST00000465727 WHAMMQ8TF30 809 aa21.88■■□□□ 1.09
SDF4-205ENST00000465727 ZNF473Q8WTR7 871 aaKnown RBP21.88■■□□□ 1.09
SDF4-205ENST00000465727 RNPC3Q96LT9 517 aaKnown RBP21.88■■□□□ 1.09
SDF4-205ENST00000465727 CCDC43Q96MW1 224 aaKnown RBP21.88■■□□□ 1.09
SDF4-205ENST00000465727 VCPKMTQ9H867 229 aa21.88■■□□□ 1.09
SDF4-205ENST00000465727 RBM12Q9NTZ6 932 aaKnown RBP21.88■■□□□ 1.09
SDF4-205ENST00000465727 NUP98P52948 1817 aa21.88■■□□□ 1.09
SDF4-205ENST00000465727 ZNF233A6NK53 670 aa21.87■■□□□ 1.09
SDF4-205ENST00000465727 AKR1B10O60218 316 aa21.87■■□□□ 1.09
SDF4-205ENST00000465727 PLEKP08567 350 aaPredicted RBP21.87■■□□□ 1.09
SDF4-205ENST00000465727 SMTNP53814 917 aa21.87■■□□□ 1.09
SDF4-205ENST00000465727 DNAJC10Q8IXB1 793 aa21.87■■□□□ 1.09
SDF4-205ENST00000465727 C3orf20Q8ND61 904 aa21.87■■□□□ 1.09
SDF4-205ENST00000465727 NOX5Q96PH1 765 aa21.87■■□□□ 1.09
SDF4-205ENST00000465727 MYO1FO00160 1098 aa21.87■■□□□ 1.09
SDF4-205ENST00000465727 KIF1CO43896 1103 aaKnown RBP21.87■■□□□ 1.09
SDF4-205ENST00000465727 HSPA1LP34931 641 aa21.87■■□□□ 1.09
SDF4-205ENST00000465727 PRPHP41219 470 aa21.87■■□□□ 1.09
SDF4-205ENST00000465727 ATP1A2P50993 1020 aa21.87■■□□□ 1.09
SDF4-205ENST00000465727 ARHGAP27Q6ZUM4 889 aa21.87■■□□□ 1.09
SDF4-205ENST00000465727 SH2D3CQ8N5H7 860 aa21.87■■□□□ 1.09
SDF4-205ENST00000465727 ATP6V1G3Q96LB4 118 aa21.87■■□□□ 1.09
SDF4-205ENST00000465727 TLR10Q9BXR5 811 aa21.87■■□□□ 1.09
SDF4-205ENST00000465727 TMOD3Q9NYL9 352 aa21.87■■□□□ 1.09
SDF4-205ENST00000465727 NHSL1Q5SYE7 1610 aa21.86■■□□□ 1.09
SDF4-205ENST00000465727 GRID2IPA4D2P6 1211 aa21.86■■□□□ 1.09
SDF4-205ENST00000465727 FAM107AO95990 144 aa21.86■■□□□ 1.09
SDF4-205ENST00000465727 EIF4A3P38919 411 aaKnown RBP21.86■■□□□ 1.09
SDF4-205ENST00000465727 ACTN3Q08043 901 aaPredicted RBP21.86■■□□□ 1.09
SDF4-205ENST00000465727 ARFGAP2Q8N6H7 521 aa21.86■■□□□ 1.09
SDF4-205ENST00000465727 PCDHA4Q9UN74 947 aa21.86■■□□□ 1.09
SDF4-205ENST00000465727 SIK3Q9Y2K2 1263 aa21.86■■□□□ 1.09
SDF4-205ENST00000465727 TOGARAM1Q9Y4F4 1720 aa21.86■■□□□ 1.09
SDF4-205ENST00000465727 CXCR5P32302 372 aa21.86■■□□□ 1.09
SDF4-205ENST00000465727 MDH1P40925 334 aaKnown RBP21.86■■□□□ 1.09
SDF4-205ENST00000465727 MAGEA1P43355 309 aa21.86■■□□□ 1.09
SDF4-205ENST00000465727 PDE4DQ08499 809 aa21.86■■□□□ 1.09
SDF4-205ENST00000465727 KCTD16Q68DU8 428 aa21.86■■□□□ 1.09
SDF4-205ENST00000465727 PPP4R3AQ6IN85 833 aa21.86■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms