RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 SLC25A27O95847 323 aa3.32□□□□□ -1.88
USP40-211ENST00000464956 TOP3BO95985 862 aaKnown RBP3.32□□□□□ -1.88
USP40-211ENST00000464956 PGK2P07205 417 aa3.32□□□□□ -1.88
USP40-211ENST00000464956 CFHP08603 1231 aa3.32□□□□□ -1.88
USP40-211ENST00000464956 SLURP2P0DP57 97 aa3.32□□□□□ -1.88
USP40-211ENST00000464956 HOXB8P17481 243 aaPredicted RBP3.32□□□□□ -1.88
USP40-211ENST00000464956 RDXP35241 583 aaKnown RBP3.32□□□□□ -1.88
USP40-211ENST00000464956 CSRP3P50461 194 aa3.32□□□□□ -1.88
USP40-211ENST00000464956 USP14P54578 494 aa3.32□□□□□ -1.88
USP40-211ENST00000464956 NRLP54845 237 aa3.32□□□□□ -1.88
USP40-211ENST00000464956 NKX3-2P78367 333 aa3.32□□□□□ -1.88
USP40-211ENST00000464956 TNFAIP2Q03169 654 aa3.32□□□□□ -1.88
USP40-211ENST00000464956 CFHR1Q03591 330 aa3.32□□□□□ -1.88
USP40-211ENST00000464956 PICALMQ13492 652 aa3.32□□□□□ -1.88
USP40-211ENST00000464956 SERINC3Q13530 473 aa3.32□□□□□ -1.88
USP40-211ENST00000464956 ACVR2BQ13705 512 aa3.32□□□□□ -1.88
USP40-211ENST00000464956 NONOQ15233 471 aaKnown RBP eCLIP3.32□□□□□ -1.88
USP40-211ENST00000464956 ZYXQ15942 572 aaKnown RBP3.32□□□□□ -1.88
USP40-211ENST00000464956 ZNF792Q3KQV3 632 aa3.32□□□□□ -1.88
USP40-211ENST00000464956 CCDC144BQ3MJ40 725 aa3.32□□□□□ -1.88
USP40-211ENST00000464956 TPRNQ4KMQ1 711 aa3.32□□□□□ -1.88
USP40-211ENST00000464956 STPG1Q5TH74 334 aa3.32□□□□□ -1.88
USP40-211ENST00000464956 CES5AQ6NT32 575 aa3.32□□□□□ -1.88
USP40-211ENST00000464956 POTEGQ6S5H5 508 aa3.32□□□□□ -1.88
USP40-211ENST00000464956 ARHGAP30Q7Z6I6 1101 aaPredicted RBP3.32□□□□□ -1.88
USP40-211ENST00000464956 ADGRD2Q7Z7M1 963 aa3.32□□□□□ -1.88
USP40-211ENST00000464956 CAGE1Q8TC20 777 aa3.32□□□□□ -1.88
USP40-211ENST00000464956 AFAP1L1Q8TED9 768 aa3.32□□□□□ -1.88
USP40-211ENST00000464956 C12orf42Q96LP6 360 aa3.32□□□□□ -1.88
USP40-211ENST00000464956 PHF12Q96QT6 1004 aa3.32□□□□□ -1.88
USP40-211ENST00000464956 CDCA3Q99618 268 aaPredicted RBP3.32□□□□□ -1.88
USP40-211ENST00000464956 POLR3GLQ9BT43 218 aa3.32□□□□□ -1.88
USP40-211ENST00000464956 MYL10Q9BUA6 226 aa3.32□□□□□ -1.88
USP40-211ENST00000464956 PLVAPQ9BX97 442 aa3.32□□□□□ -1.88
USP40-211ENST00000464956 S1PR5Q9H228 398 aa3.32□□□□□ -1.88
USP40-211ENST00000464956 GINM1Q9NU53 330 aa3.32□□□□□ -1.88
USP40-211ENST00000464956 HYPKQ9NX55 129 aa3.32□□□□□ -1.88
USP40-211ENST00000464956 HOXC10Q9NYD6 342 aa3.32□□□□□ -1.88
USP40-211ENST00000464956 DLGAP2Q9P1A6 1054 aa3.32□□□□□ -1.88
USP40-211ENST00000464956 HERC5Q9UII4 1024 aaKnown RBP3.32□□□□□ -1.88
USP40-211ENST00000464956 HCFC2Q9Y5Z7 792 aa3.32□□□□□ -1.88
USP40-211ENST00000464956 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP3.32□□□□□ -1.88
USP40-211ENST00000464956 DOCK3Q8IZD9 2030 aa3.32□□□□□ -1.88
USP40-211ENST00000464956 GCN1Q92616 2671 aaKnown RBP3.32□□□□□ -1.88
USP40-211ENST00000464956 PTPN13Q12923 2485 aa3.31□□□□□ -1.88
USP40-211ENST00000464956 CNOT1A5YKK6 2376 aaKnown RBP3.31□□□□□ -1.88
USP40-211ENST00000464956 SALL3Q9BXA9 1300 aa3.31□□□□□ -1.88
USP40-211ENST00000464956 KRBA1A5PL33 1030 aa3.31□□□□□ -1.88
USP40-211ENST00000464956 FAM221BA6H8Z2 402 aa3.31□□□□□ -1.88
USP40-211ENST00000464956 CTAGE5O15320 804 aa3.31□□□□□ -1.88
USP40-211ENST00000464956 PER1O15534 1290 aaPredicted RBP3.31□□□□□ -1.88
USP40-211ENST00000464956 TREHO43280 583 aa3.31□□□□□ -1.88
USP40-211ENST00000464956 HYAL3O43820 417 aaPredicted RBP3.31□□□□□ -1.88
USP40-211ENST00000464956 SNAI1O95863 264 aaPredicted RBP3.31□□□□□ -1.88
USP40-211ENST00000464956 CXCL10P02778 98 aa3.31□□□□□ -1.88
USP40-211ENST00000464956 NEFMP07197 916 aa3.31□□□□□ -1.88
USP40-211ENST00000464956 CEACAM1P13688 526 aa3.31□□□□□ -1.88
USP40-211ENST00000464956 SELPP16109 830 aa3.31□□□□□ -1.88
USP40-211ENST00000464956 TECP42680 631 aa3.31□□□□□ -1.88
USP40-211ENST00000464956 MTHFRP42898 656 aa3.31□□□□□ -1.88
USP40-211ENST00000464956 MCAMP43121 646 aa3.31□□□□□ -1.88
USP40-211ENST00000464956 ITIH3Q06033 890 aa3.31□□□□□ -1.88
USP40-211ENST00000464956 IFIT5Q13325 482 aaKnown RBP3.31□□□□□ -1.88
USP40-211ENST00000464956 COG2Q14746 738 aa3.31□□□□□ -1.88
USP40-211ENST00000464956 DIXDC1Q155Q3 683 aa3.31□□□□□ -1.88
USP40-211ENST00000464956 NAALADL2Q58DX5 795 aa3.31□□□□□ -1.88
USP40-211ENST00000464956 TAF7LQ5H9L4 462 aa3.31□□□□□ -1.88
USP40-211ENST00000464956 SH3PXD2AQ5TCZ1 1133 aa3.31□□□□□ -1.88
USP40-211ENST00000464956 KIAA1211LQ6NV74 962 aa3.31□□□□□ -1.88
USP40-211ENST00000464956 ANKRD54Q6NXT1 300 aa3.31□□□□□ -1.88
USP40-211ENST00000464956 XRRA1Q6P2D8 792 aa3.31□□□□□ -1.88
USP40-211ENST00000464956 LIN28BQ6ZN17 250 aaKnown RBP eCLIP3.31□□□□□ -1.88
USP40-211ENST00000464956 LRRC8DQ7L1W4 858 aa3.31□□□□□ -1.88
USP40-211ENST00000464956 TLK2Q86UE8 772 aa3.31□□□□□ -1.88
USP40-211ENST00000464956 FAM181AQ8N9Y4 354 aa3.31□□□□□ -1.88
USP40-211ENST00000464956 PJA1Q8NG27 643 aa3.31□□□□□ -1.88
USP40-211ENST00000464956 WDR66Q8TBY9 1149 aa3.31□□□□□ -1.88
USP40-211ENST00000464956 MICAL1Q8TDZ2 1067 aa3.31□□□□□ -1.88
USP40-211ENST00000464956 ATP8B4Q8TF62 1192 aa3.31□□□□□ -1.88
USP40-211ENST00000464956 ACSF2Q96CM8 615 aaPredicted RBP3.31□□□□□ -1.88
USP40-211ENST00000464956 IL17RAQ96F46 866 aa3.31□□□□□ -1.88
USP40-211ENST00000464956 APOL5Q9BWW9 433 aa3.31□□□□□ -1.88
USP40-211ENST00000464956 TRIM34Q9BYJ4 488 aa3.31□□□□□ -1.88
USP40-211ENST00000464956 ABHD16BQ9H3Z7 469 aa3.31□□□□□ -1.88
USP40-211ENST00000464956 POMKQ9H5K3 350 aa3.31□□□□□ -1.88
USP40-211ENST00000464956 CCDC86Q9H6F5 360 aaKnown RBP3.31□□□□□ -1.88
USP40-211ENST00000464956 RPAP3Q9H6T3 665 aaPredicted RBP3.31□□□□□ -1.88
USP40-211ENST00000464956 GPHNQ9NQX3 736 aaPredicted RBP3.31□□□□□ -1.88
USP40-211ENST00000464956 CYP26B1Q9NR63 512 aa3.31□□□□□ -1.88
USP40-211ENST00000464956 ANKMY1Q9P2S6 941 aa3.31□□□□□ -1.88
USP40-211ENST00000464956 NXF1Q9UBU9 619 aaKnown RBP3.31□□□□□ -1.88
USP40-211ENST00000464956 DBR1Q9UK59 544 aaKnown RBP3.31□□□□□ -1.88
USP40-211ENST00000464956 KLK13Q9UKR3 277 aa3.31□□□□□ -1.88
USP40-211ENST00000464956 CA14Q9ULX7 337 aa3.31□□□□□ -1.88
USP40-211ENST00000464956 PLAGL2Q9UPG8 496 aa3.31□□□□□ -1.88
USP40-211ENST00000464956 USTQ9Y2C2 406 aa3.31□□□□□ -1.88
USP40-211ENST00000464956 ASPMQ8IZT6 3477 aa3.31□□□□□ -1.88
USP40-211ENST00000464956 OTOGLQ3ZCN5 2332 aa3.3□□□□□ -1.88
USP40-211ENST00000464956 BRWD1Q9NSI6 2320 aa3.3□□□□□ -1.88
USP40-211ENST00000464956 PYCARD-AS1I3L0S3 204 aa3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms