RNA–Protein interactions for RNA: ENST00000463988.1

SNRNP40-203, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 2

Gene SNRNP40, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-203ENST00000463988 KIAA1211Q6ZU35 1233 aa16.83■□□□□ 0.28
SNRNP40-203ENST00000463988 EEPD1Q7L9B9 569 aa16.83■□□□□ 0.28
SNRNP40-203ENST00000463988 CUL9Q8IWT3 2517 aa16.83■□□□□ 0.28
SNRNP40-203ENST00000463988 FAM126BQ8IXS8 530 aa16.83■□□□□ 0.28
SNRNP40-203ENST00000463988 SLC17A8Q8NDX2 589 aa16.83■□□□□ 0.28
SNRNP40-203ENST00000463988 DNERQ8NFT8 737 aa16.83■□□□□ 0.28
SNRNP40-203ENST00000463988 PURBQ96QR8 312 aaKnown RBP16.83■□□□□ 0.28
SNRNP40-203ENST00000463988 MPHOSPH6Q99547 160 aaKnown RBP16.83■□□□□ 0.28
SNRNP40-203ENST00000463988 KAT14Q9H8E8 782 aa16.83■□□□□ 0.28
SNRNP40-203ENST00000463988 ZSWIM5Q9P217 1185 aa16.83■□□□□ 0.28
SNRNP40-203ENST00000463988 DDX49Q9Y6V7 483 aaKnown RBP16.83■□□□□ 0.28
SNRNP40-203ENST00000463988 B4E1Z4 1266 aa16.82■□□□□ 0.28
SNRNP40-203ENST00000463988 CD4P01730 458 aa16.82■□□□□ 0.28
SNRNP40-203ENST00000463988 RPS6P62753 249 aaKnown RBP16.82■□□□□ 0.28
SNRNP40-203ENST00000463988 ASPRV1Q53RT3 343 aa16.82■□□□□ 0.28
SNRNP40-203ENST00000463988 TTC22Q5TAA0 569 aa16.82■□□□□ 0.28
SNRNP40-203ENST00000463988 ZNF697Q5TEC3 545 aa16.82■□□□□ 0.28
SNRNP40-203ENST00000463988 CXCL17Q6UXB2 119 aa16.82■□□□□ 0.28
SNRNP40-203ENST00000463988 SLC30A10Q6XR72 485 aa16.82■□□□□ 0.28
SNRNP40-203ENST00000463988 ENAHQ8N8S7 591 aaPredicted RBP16.82■□□□□ 0.28
SNRNP40-203ENST00000463988 RNPC3Q96LT9 517 aaKnown RBP16.82■□□□□ 0.28
SNRNP40-203ENST00000463988 RAD50Q92878 1312 aa16.81■□□□□ 0.28
SNRNP40-203ENST00000463988 B4DLN1 442 aa16.81■□□□□ 0.28
SNRNP40-203ENST00000463988 GOLGA8HP0CJ92 632 aa16.81■□□□□ 0.28
SNRNP40-203ENST00000463988 EDNRBP24530 442 aa16.81■□□□□ 0.28
SNRNP40-203ENST00000463988 CALML3P27482 149 aa16.81■□□□□ 0.28
SNRNP40-203ENST00000463988 PDE4AP27815 886 aa16.81■□□□□ 0.28
SNRNP40-203ENST00000463988 MRPL12P52815 198 aaKnown RBP16.81■□□□□ 0.28
SNRNP40-203ENST00000463988 PPIGQ13427 754 aaKnown RBP eCLIP16.81■□□□□ 0.286e-6■■■■□ 23.2
SNRNP40-203ENST00000463988 GUCD1Q96NT3 240 aa16.81■□□□□ 0.28
SNRNP40-203ENST00000463988 WDR11Q9BZH6 1224 aa16.81■□□□□ 0.28
SNRNP40-203ENST00000463988 TNKSO95271 1327 aa16.8■□□□□ 0.28
SNRNP40-203ENST00000463988 ABCB11O95342 1321 aa16.8■□□□□ 0.28
SNRNP40-203ENST00000463988 ITGA7Q13683 1181 aa16.8■□□□□ 0.28
SNRNP40-203ENST00000463988 TMEM199Q8N511 208 aa16.8■□□□□ 0.28
SNRNP40-203ENST00000463988 UBAC1Q9BSL1 405 aa16.8■□□□□ 0.28
SNRNP40-203ENST00000463988 UBA5Q9GZZ9 404 aa16.8■□□□□ 0.28
SNRNP40-203ENST00000463988 A0A0C4DFX4 3053 aa16.79■□□□□ 0.28
SNRNP40-203ENST00000463988 GRIN2DO15399 1336 aa16.79■□□□□ 0.28
SNRNP40-203ENST00000463988 TMEM265A0A087WTH1 108 aa16.79■□□□□ 0.28
SNRNP40-203ENST00000463988 NKRFO15226 690 aaKnown RBP eCLIP16.79■□□□□ 0.28
SNRNP40-203ENST00000463988 PARP1P09874 1014 aaKnown RBP16.79■□□□□ 0.28
SNRNP40-203ENST00000463988 GSPT1P15170 499 aaKnown RBP16.79■□□□□ 0.28
SNRNP40-203ENST00000463988 PDE4DQ08499 809 aa16.79■□□□□ 0.28
SNRNP40-203ENST00000463988 CDC37Q16543 378 aaPredicted RBP16.79■□□□□ 0.28
SNRNP40-203ENST00000463988 TMEM63BQ5T3F8 832 aa16.79■□□□□ 0.28
SNRNP40-203ENST00000463988 ADGRF4Q8IZF3 695 aa16.79■□□□□ 0.28
SNRNP40-203ENST00000463988 RUFY2Q8WXA3 655 aa16.79■□□□□ 0.28
SNRNP40-203ENST00000463988 IL25Q9H293 177 aa16.79■□□□□ 0.28
SNRNP40-203ENST00000463988 SEMA6BQ9H3T3 888 aa16.79■□□□□ 0.28
SNRNP40-203ENST00000463988 POLR3EQ9NVU0 708 aa16.79■□□□□ 0.28
SNRNP40-203ENST00000463988 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.78■□□□□ 0.28
SNRNP40-203ENST00000463988 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.78■□□□□ 0.28
SNRNP40-203ENST00000463988 PTGS1P23219 599 aa16.78■□□□□ 0.28
SNRNP40-203ENST00000463988 CPT1AP50416 773 aa16.78■□□□□ 0.28
SNRNP40-203ENST00000463988 USH1GQ495M9 461 aa16.78■□□□□ 0.28
SNRNP40-203ENST00000463988 MCF2L2Q86YR7 1114 aa16.78■□□□□ 0.28
SNRNP40-203ENST00000463988 SCFD2Q8WU76 684 aa16.78■□□□□ 0.28
SNRNP40-203ENST00000463988 CPVLQ9H3G5 476 aa16.78■□□□□ 0.28
SNRNP40-203ENST00000463988 CSF2RAP15509 400 aa16.77■□□□□ 0.28
SNRNP40-203ENST00000463988 BRDTQ58F21 947 aaPredicted RBP16.77■□□□□ 0.28
SNRNP40-203ENST00000463988 TMEM240Q5SV17 173 aa16.77■□□□□ 0.28
SNRNP40-203ENST00000463988 IFIT1BQ5T764 474 aaKnown RBP16.77■□□□□ 0.28
SNRNP40-203ENST00000463988 RASIP1Q5U651 963 aa16.77■□□□□ 0.28
SNRNP40-203ENST00000463988 PSRC1Q6PGN9 363 aaPredicted RBP16.77■□□□□ 0.28
SNRNP40-203ENST00000463988 C16orf59Q7L2K0 433 aa16.77■□□□□ 0.28
SNRNP40-203ENST00000463988 FAM161BQ96MY7 647 aa16.77■□□□□ 0.28
SNRNP40-203ENST00000463988 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.77■□□□□ 0.28
SNRNP40-203ENST00000463988 A6NJR5 290 aa16.76■□□□□ 0.27
SNRNP40-203ENST00000463988 KPNA6O60684 536 aa16.76■□□□□ 0.27
SNRNP40-203ENST00000463988 CHMLP26374 656 aa16.76■□□□□ 0.27
SNRNP40-203ENST00000463988 PURAQ00577 322 aaKnown RBP16.76■□□□□ 0.27
SNRNP40-203ENST00000463988 TRDNQ13061 729 aa16.76■□□□□ 0.27
SNRNP40-203ENST00000463988 PPP2R5BQ15173 497 aa16.76■□□□□ 0.27
SNRNP40-203ENST00000463988 SEC23AQ15436 765 aa16.76■□□□□ 0.27
SNRNP40-203ENST00000463988 QRICH1Q2TAL8 776 aa16.76■□□□□ 0.27
SNRNP40-203ENST00000463988 FBXO11Q86XK2 927 aa16.76■□□□□ 0.27
SNRNP40-203ENST00000463988 NSUN6Q8TEA1 469 aaKnown RBP16.76■□□□□ 0.27
SNRNP40-203ENST00000463988 CDX2Q99626 313 aaPredicted RBP16.76■□□□□ 0.27
SNRNP40-203ENST00000463988 TTYH1Q9H313 450 aaPredicted RBP16.76■□□□□ 0.27
SNRNP40-203ENST00000463988 HIPK3Q9H422 1215 aa16.76■□□□□ 0.27
SNRNP40-203ENST00000463988 JMJD4Q9H9V9 463 aa16.76■□□□□ 0.27
SNRNP40-203ENST00000463988 MRPL11Q9Y3B7 192 aaKnown RBP16.76■□□□□ 0.27
SNRNP40-203ENST00000463988 U3KPZ7 1027 aaPredicted RBP16.76■□□□□ 0.27
SNRNP40-203ENST00000463988 SUPT20HL2P0C7V6 817 aa16.75■□□□□ 0.27
SNRNP40-203ENST00000463988 CYP2C18P33260 490 aa16.75■□□□□ 0.27
SNRNP40-203ENST00000463988 PSMC6P62333 389 aa16.75■□□□□ 0.27
SNRNP40-203ENST00000463988 TTLL4Q14679 1199 aa16.75■□□□□ 0.27
SNRNP40-203ENST00000463988 OR6J1Q8NGC5 347 aa16.75■□□□□ 0.27
SNRNP40-203ENST00000463988 SYTL5Q8TDW5 730 aaPredicted RBP16.75■□□□□ 0.27
SNRNP40-203ENST00000463988 IWS1Q96ST2 819 aa16.75■□□□□ 0.27
SNRNP40-203ENST00000463988 MTG1Q9BT17 334 aaPredicted RBP16.75■□□□□ 0.27
SNRNP40-203ENST00000463988 NOC4LQ9BVI4 516 aaKnown RBP16.75■□□□□ 0.27
SNRNP40-203ENST00000463988 PPP1R12CQ9BZL4 782 aa16.75■□□□□ 0.27
SNRNP40-203ENST00000463988 TRPV6Q9H1D0 765 aa16.75■□□□□ 0.27
SNRNP40-203ENST00000463988 ALDH8A1Q9H2A2 487 aaPredicted RBP16.75■□□□□ 0.27
SNRNP40-203ENST00000463988 IL23AQ9NPF7 189 aa16.75■□□□□ 0.27
SNRNP40-203ENST00000463988 GPHNQ9NQX3 736 aaPredicted RBP16.75■□□□□ 0.27
SNRNP40-203ENST00000463988 DHX16O60231 1041 aaKnown RBP16.74■□□□□ 0.27
SNRNP40-203ENST00000463988 B4GALT4O60513 344 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms