RNA–Protein interactions for RNA: ENST00000463477.5

PTPRD-207, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 1,697 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-207ENST00000463477 TFAP4Q01664 338 aa11.28□□□□□ -0.6
PTPRD-207ENST00000463477 RRP12Q5JTH9 1297 aaKnown RBP11.28□□□□□ -0.6
PTPRD-207ENST00000463477 CCDC144CPQ8IYA2 1237 aa11.28□□□□□ -0.6
PTPRD-207ENST00000463477 DIS3L2Q8IYB7 885 aaKnown RBP11.28□□□□□ -0.6
PTPRD-207ENST00000463477 ANKRD13CQ8N6S4 541 aa11.28□□□□□ -0.6
PTPRD-207ENST00000463477 KRI1Q8N9T8 703 aaKnown RBP11.28□□□□□ -0.6
PTPRD-207ENST00000463477 ZSCAN10Q96SZ4 725 aaPredicted RBP11.28□□□□□ -0.6
PTPRD-207ENST00000463477 KCND1Q9NSA2 647 aa11.28□□□□□ -0.6
PTPRD-207ENST00000463477 MTMR4Q9NYA4 1195 aa11.28□□□□□ -0.6
PTPRD-207ENST00000463477 MORF4L1Q9UBU8 362 aa11.28□□□□□ -0.6
PTPRD-207ENST00000463477 SYNPO2Q9UMS6 1093 aa11.28□□□□□ -0.6
PTPRD-207ENST00000463477 CEP131Q9UPN4 1083 aa11.28□□□□□ -0.6
PTPRD-207ENST00000463477 LOC285556D6RIA3 1793 aa11.27□□□□□ -0.6
PTPRD-207ENST00000463477 PRPF3O43395 683 aaKnown RBP11.27□□□□□ -0.6
PTPRD-207ENST00000463477 TSPY3P0CV98 308 aa11.27□□□□□ -0.6
PTPRD-207ENST00000463477 TSPY8P0CW00 308 aa11.27□□□□□ -0.6
PTPRD-207ENST00000463477 XBP1P17861 261 aa11.27□□□□□ -0.6
PTPRD-207ENST00000463477 PTPREP23469 700 aa11.27□□□□□ -0.6
PTPRD-207ENST00000463477 CTGFP29279 349 aa11.27□□□□□ -0.6
PTPRD-207ENST00000463477 MARCKSP29966 332 aaPredicted RBP11.27□□□□□ -0.6
PTPRD-207ENST00000463477 PSMC4P43686 418 aa11.27□□□□□ -0.6
PTPRD-207ENST00000463477 PRMT2P55345 433 aa11.27□□□□□ -0.6
PTPRD-207ENST00000463477 GSDMDP57764 484 aa11.27□□□□□ -0.6
PTPRD-207ENST00000463477 FUT2Q10981 343 aa11.27□□□□□ -0.6
PTPRD-207ENST00000463477 COG2Q14746 738 aa11.27□□□□□ -0.6
PTPRD-207ENST00000463477 KIAA1755Q5JYT7 1200 aa11.27□□□□□ -0.6
PTPRD-207ENST00000463477 DNTTIP2Q5QJE6 756 aaKnown RBP11.27□□□□□ -0.6
PTPRD-207ENST00000463477 LBX2Q6XYB7 198 aa11.27□□□□□ -0.6
PTPRD-207ENST00000463477 IQCA1Q86XH1 822 aa11.27□□□□□ -0.6
PTPRD-207ENST00000463477 CLEC10AQ8IUN9 316 aa11.27□□□□□ -0.6
PTPRD-207ENST00000463477 AOPEPQ8N6M6 819 aa11.27□□□□□ -0.6
PTPRD-207ENST00000463477 ENAHQ8N8S7 591 aaPredicted RBP11.27□□□□□ -0.6
PTPRD-207ENST00000463477 MAP7D2Q96T17 732 aa11.27□□□□□ -0.6
PTPRD-207ENST00000463477 ARHGAP39Q9C0H5 1083 aa11.27□□□□□ -0.6
PTPRD-207ENST00000463477 RPAP3Q9H6T3 665 aaPredicted RBP11.27□□□□□ -0.6
PTPRD-207ENST00000463477 TOMM22Q9NS69 142 aa11.27□□□□□ -0.6
PTPRD-207ENST00000463477 HOXC10Q9NYD6 342 aa11.27□□□□□ -0.6
PTPRD-207ENST00000463477 RBPJLQ9UBG7 517 aa11.27□□□□□ -0.6
PTPRD-207ENST00000463477 PTPN22Q9Y2R2 807 aa11.27□□□□□ -0.6
PTPRD-207ENST00000463477 TTLL1O95922 423 aa11.27□□□□□ -0.61
PTPRD-207ENST00000463477 BMP15O95972 392 aa11.27□□□□□ -0.61
PTPRD-207ENST00000463477 HOXD10P28358 340 aa11.27□□□□□ -0.61
PTPRD-207ENST00000463477 TOB1P50616 345 aaPredicted RBP11.27□□□□□ -0.61
PTPRD-207ENST00000463477 DPCR1Q3MIW9 517 aa11.27□□□□□ -0.61
PTPRD-207ENST00000463477 FAM47AQ5JRC9 791 aa11.27□□□□□ -0.61
PTPRD-207ENST00000463477 PPP4R3BQ5MIZ7 849 aa11.27□□□□□ -0.61
PTPRD-207ENST00000463477 KRBA2Q6ZNG9 492 aa11.27□□□□□ -0.61
PTPRD-207ENST00000463477 MTERF4Q7Z6M4 381 aaKnown RBP11.27□□□□□ -0.61
PTPRD-207ENST00000463477 CATIPQ7Z7H3 387 aa11.27□□□□□ -0.61
PTPRD-207ENST00000463477 CEP95Q96GE4 821 aa11.27□□□□□ -0.61
PTPRD-207ENST00000463477 TRIM47Q96LD4 638 aa11.27□□□□□ -0.61
PTPRD-207ENST00000463477 GOPCQ9HD26 462 aa11.27□□□□□ -0.61
PTPRD-207ENST00000463477 HOOK1Q9UJC3 728 aaKnown RBP11.27□□□□□ -0.61
PTPRD-207ENST00000463477 PLIN4Q96Q06 1357 aa11.27□□□□□ -0.61
PTPRD-207ENST00000463477 TSPY2A6NKD2 308 aa11.26□□□□□ -0.61
PTPRD-207ENST00000463477 BTBD18B2RXH4 712 aa11.26□□□□□ -0.61
PTPRD-207ENST00000463477 F5H6K3 240 aa11.26□□□□□ -0.61
PTPRD-207ENST00000463477 WDR46O15213 610 aaKnown RBP11.26□□□□□ -0.61
PTPRD-207ENST00000463477 KCNJ6P48051 423 aa11.26□□□□□ -0.61
PTPRD-207ENST00000463477 NOVP48745 357 aa11.26□□□□□ -0.61
PTPRD-207ENST00000463477 FCGRTP55899 365 aa11.26□□□□□ -0.61
PTPRD-207ENST00000463477 ATP2B2Q01814 1243 aa11.26□□□□□ -0.61
PTPRD-207ENST00000463477 AKAP17AQ02040 695 aaKnown RBP11.26□□□□□ -0.61
PTPRD-207ENST00000463477 KLRC3Q07444 240 aa11.26□□□□□ -0.61
PTPRD-207ENST00000463477 NCAPHQ15003 741 aa11.26□□□□□ -0.61
PTPRD-207ENST00000463477 CCDC144BQ3MJ40 725 aa11.26□□□□□ -0.61
PTPRD-207ENST00000463477 POTEEQ6S8J3 1075 aa11.26□□□□□ -0.61
PTPRD-207ENST00000463477 LRRC8AQ8IWT6 810 aa11.26□□□□□ -0.61
PTPRD-207ENST00000463477 GPRC5AQ8NFJ5 357 aa11.26□□□□□ -0.61
PTPRD-207ENST00000463477 CACTINQ8WUQ7 758 aaKnown RBP11.26□□□□□ -0.61
PTPRD-207ENST00000463477 ZKSCAN3Q9BRR0 538 aa11.26□□□□□ -0.61
PTPRD-207ENST00000463477 NRBP1Q9UHY1 535 aa11.26□□□□□ -0.61
PTPRD-207ENST00000463477 FBXO2Q9UK22 296 aaPredicted RBP11.26□□□□□ -0.61
PTPRD-207ENST00000463477 KCNH3Q9ULD8 1083 aa11.26□□□□□ -0.61
PTPRD-207ENST00000463477 RABGAP1Q9Y3P9 1069 aa11.26□□□□□ -0.61
PTPRD-207ENST00000463477 MYH8P13535 1937 aa11.25□□□□□ -0.61
PTPRD-207ENST00000463477 TROAPQ12815 778 aa11.25□□□□□ -0.61
PTPRD-207ENST00000463477 Q3C1V9 767 aa11.25□□□□□ -0.61
PTPRD-207ENST00000463477 IFIT1BQ5T764 474 aaKnown RBP11.25□□□□□ -0.61
PTPRD-207ENST00000463477 NT5DC1Q5TFE4 455 aa11.25□□□□□ -0.61
PTPRD-207ENST00000463477 KANK3Q6NY19 840 aa11.25□□□□□ -0.61
PTPRD-207ENST00000463477 SPICE1Q8N0Z3 855 aa11.25□□□□□ -0.61
PTPRD-207ENST00000463477 PHF20Q9BVI0 1012 aa11.25□□□□□ -0.61
PTPRD-207ENST00000463477 TXNRD2Q9NNW7 524 aa11.25□□□□□ -0.61
PTPRD-207ENST00000463477 IL17RBQ9NRM6 502 aa11.25□□□□□ -0.61
PTPRD-207ENST00000463477 TCP11L1Q9NUJ3 509 aa11.25□□□□□ -0.61
PTPRD-207ENST00000463477 FAM13BQ9NYF5 915 aa11.25□□□□□ -0.61
PTPRD-207ENST00000463477 SRRDQ9UH36 339 aa11.25□□□□□ -0.61
PTPRD-207ENST00000463477 SRPRBQ9Y5M8 271 aaKnown RBP11.25□□□□□ -0.61
PTPRD-207ENST00000463477 MYPNQ86TC9 1320 aa11.24□□□□□ -0.61
PTPRD-207ENST00000463477 SPDYE16A6NNV3 312 aaPredicted RBP11.24□□□□□ -0.61
PTPRD-207ENST00000463477 DSG3P32926 999 aa11.24□□□□□ -0.61
PTPRD-207ENST00000463477 MDM2Q00987 491 aaPredicted RBP11.24□□□□□ -0.61
PTPRD-207ENST00000463477 PKN1Q16512 942 aa11.24□□□□□ -0.61
PTPRD-207ENST00000463477 CCDC178Q5BJE1 867 aa11.24□□□□□ -0.61
PTPRD-207ENST00000463477 CT47A1Q5JQC4 288 aaPredicted RBP11.24□□□□□ -0.61
PTPRD-207ENST00000463477 TMTC3Q6ZXV5 915 aa11.24□□□□□ -0.61
PTPRD-207ENST00000463477 TRIML1Q8N9V2 468 aa11.24□□□□□ -0.61
PTPRD-207ENST00000463477 GMCL1P1Q8NEA9 526 aa11.24□□□□□ -0.61
PTPRD-207ENST00000463477 GREB1LQ9C091 1923 aaPredicted RBP11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms