RNA–Protein interactions for RNA: ENST00000460940.5

APTX-209, Transcript of aprataxin, humanhuman

TSL 1 (best)

Gene APTX, Length 1,874 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APTX-209ENST00000460940 SYNGAP1Q96PV0 1343 aa12.79□□□□□ -0.36
APTX-209ENST00000460940 A0A0U1RQG5 324 aaPredicted RBP12.78□□□□□ -0.36
APTX-209ENST00000460940 hCG_1984214I3L0E3 225 aa12.78□□□□□ -0.36
APTX-209ENST00000460940 PRKAR2AP13861 404 aaKnown RBP12.78□□□□□ -0.36
APTX-209ENST00000460940 RABEP1Q15276 862 aa12.78□□□□□ -0.36
APTX-209ENST00000460940 MAMDC4Q6UXC1 1216 aa12.78□□□□□ -0.36
APTX-209ENST00000460940 CMTR1Q8N1G2 835 aaKnown RBP12.78□□□□□ -0.36
APTX-209ENST00000460940 ZNF713Q8N859 430 aaPredicted RBP12.78□□□□□ -0.36
APTX-209ENST00000460940 KIF2CQ99661 725 aa12.78□□□□□ -0.36
APTX-209ENST00000460940 TINF2Q9BSI4 451 aa12.78□□□□□ -0.36
APTX-209ENST00000460940 MAP3K20Q9NYL2 800 aaKnown RBP12.78□□□□□ -0.36
APTX-209ENST00000460940 FLRT1Q9NZU1 646 aa12.78□□□□□ -0.36
APTX-209ENST00000460940 ADD3Q9UEY8 706 aaKnown RBP12.78□□□□□ -0.36
APTX-209ENST00000460940 MYH6P13533 1939 aa12.78□□□□□ -0.36
APTX-209ENST00000460940 PTPDC1A2A3K4 754 aa12.78□□□□□ -0.36
APTX-209ENST00000460940 CAPN2P17655 700 aa12.78□□□□□ -0.36
APTX-209ENST00000460940 ADD1P35611 737 aaKnown RBP12.78□□□□□ -0.36
APTX-209ENST00000460940 BAATQ14032 418 aaPredicted RBP12.78□□□□□ -0.36
APTX-209ENST00000460940 PPP1R18Q6NYC8 613 aa12.78□□□□□ -0.36
APTX-209ENST00000460940 CPLX2Q6PUV4 134 aaKnown RBP12.78□□□□□ -0.36
APTX-209ENST00000460940 SLC30A10Q6XR72 485 aa12.78□□□□□ -0.36
APTX-209ENST00000460940 TEX2Q8IWB9 1127 aa12.78□□□□□ -0.36
APTX-209ENST00000460940 PIBF1Q8WXW3 757 aa12.78□□□□□ -0.36
APTX-209ENST00000460940 BAZ2BQ9UIF8 2168 aaKnown RBP12.78□□□□□ -0.36
APTX-209ENST00000460940 RPTORQ8N122 1335 aa12.77□□□□□ -0.36
APTX-209ENST00000460940 PLXNA1Q9UIW2 1896 aa12.77□□□□□ -0.36
APTX-209ENST00000460940 ASB14A6NK59 587 aa12.77□□□□□ -0.37
APTX-209ENST00000460940 CCL5P13501 91 aa12.77□□□□□ -0.37
APTX-209ENST00000460940 IFNAR1P17181 557 aa12.77□□□□□ -0.37
APTX-209ENST00000460940 RPS6P62753 249 aaKnown RBP12.77□□□□□ -0.37
APTX-209ENST00000460940 CCDC82Q8N4S0 544 aa12.77□□□□□ -0.37
APTX-209ENST00000460940 FGD4Q96M96 766 aa12.77□□□□□ -0.37
APTX-209ENST00000460940 MPHOSPH6Q99547 160 aaKnown RBP12.77□□□□□ -0.37
APTX-209ENST00000460940 TMEM106CQ9BVX2 250 aa12.77□□□□□ -0.37
APTX-209ENST00000460940 HMX1Q9NP08 348 aaPredicted RBP12.77□□□□□ -0.37
APTX-209ENST00000460940 TPCN1Q9ULQ1 816 aa12.77□□□□□ -0.37
APTX-209ENST00000460940 ZNFX1Q9P2E3 1918 aaKnown RBP12.77□□□□□ -0.37
APTX-209ENST00000460940 CPLX1O14810 134 aa12.76□□□□□ -0.37
APTX-209ENST00000460940 PFKFB2O60825 505 aa12.76□□□□□ -0.37
APTX-209ENST00000460940 CDKL5O76039 1030 aa12.76□□□□□ -0.37
APTX-209ENST00000460940 CALML3P27482 149 aa12.76□□□□□ -0.37
APTX-209ENST00000460940 CYP2C19P33261 490 aa12.76□□□□□ -0.37
APTX-209ENST00000460940 MRE11P49959 708 aa12.76□□□□□ -0.37
APTX-209ENST00000460940 HSD17B4P51659 736 aa12.76□□□□□ -0.37
APTX-209ENST00000460940 CCT2P78371 535 aaKnown RBP12.76□□□□□ -0.37
APTX-209ENST00000460940 CNTN2Q02246 1040 aa12.76□□□□□ -0.37
APTX-209ENST00000460940 CACNB2Q08289 660 aaPredicted RBP12.76□□□□□ -0.37
APTX-209ENST00000460940 TRIM32Q13049 653 aa12.76□□□□□ -0.37
APTX-209ENST00000460940 DNERQ8NFT8 737 aa12.76□□□□□ -0.37
APTX-209ENST00000460940 RNF26Q9BY78 433 aaPredicted RBP12.76□□□□□ -0.37
APTX-209ENST00000460940 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.76□□□□□ -0.37
APTX-209ENST00000460940 SLKQ9H2G2 1235 aaPredicted RBP12.76□□□□□ -0.37
APTX-209ENST00000460940 PAK6Q9NQU5 681 aaPredicted RBP12.76□□□□□ -0.37
APTX-209ENST00000460940 PRDM4Q9UKN5 801 aa12.76□□□□□ -0.37
APTX-209ENST00000460940 CNPY2Q9Y2B0 182 aa12.76□□□□□ -0.37
APTX-209ENST00000460940 SMCHD1A6NHR9 2005 aa12.76□□□□□ -0.37
APTX-209ENST00000460940 SOWAHBA6NEL2 793 aa12.76□□□□□ -0.37
APTX-209ENST00000460940 CCDC85CA6NKD9 419 aa12.76□□□□□ -0.37
APTX-209ENST00000460940 B4DLN1 442 aa12.76□□□□□ -0.37
APTX-209ENST00000460940 OPLAHO14841 1288 aa12.76□□□□□ -0.37
APTX-209ENST00000460940 PRPF3O43395 683 aaKnown RBP12.76□□□□□ -0.37
APTX-209ENST00000460940 CYBAP13498 195 aa12.76□□□□□ -0.37
APTX-209ENST00000460940 MRPL12P52815 198 aaKnown RBP12.76□□□□□ -0.37
APTX-209ENST00000460940 AKAP17AQ02040 695 aaKnown RBP12.76□□□□□ -0.37
APTX-209ENST00000460940 MTFR1Q15390 333 aa12.76□□□□□ -0.37
APTX-209ENST00000460940 NTRK3Q16288 839 aa12.76□□□□□ -0.37
APTX-209ENST00000460940 HEATR3Q7Z4Q2 680 aa12.76□□□□□ -0.37
APTX-209ENST00000460940 TRIM22Q8IYM9 498 aa12.76□□□□□ -0.37
APTX-209ENST00000460940 SYTL5Q8TDW5 730 aaPredicted RBP12.76□□□□□ -0.37
APTX-209ENST00000460940 RNF208Q9H0X6 261 aa12.76□□□□□ -0.37
APTX-209ENST00000460940 UNC93B1Q9H1C4 597 aa12.76□□□□□ -0.37
APTX-209ENST00000460940 NCOA5Q9HCD5 579 aaKnown RBP12.76□□□□□ -0.37
APTX-209ENST00000460940 V9GY48 417 aaPredicted RBP12.76□□□□□ -0.37
APTX-209ENST00000460940 GCOM1H8Y6P7 765 aaPredicted RBP12.75□□□□□ -0.37
APTX-209ENST00000460940 CFBP00751 764 aa12.75□□□□□ -0.37
APTX-209ENST00000460940 GJB1P08034 283 aa12.75□□□□□ -0.37
APTX-209ENST00000460940 POLR2MP0CAP2 368 aa12.75□□□□□ -0.37
APTX-209ENST00000460940 PFKFB3Q16875 520 aaPredicted RBP12.75□□□□□ -0.37
APTX-209ENST00000460940 ARMCX2Q7L311 632 aa12.75□□□□□ -0.37
APTX-209ENST00000460940 MORC4Q8TE76 937 aa12.75□□□□□ -0.37
APTX-209ENST00000460940 LARP6Q9BRS8 491 aaKnown RBP12.75□□□□□ -0.37
APTX-209ENST00000460940 hCG_1642624A0A1W2PR95 340 aa12.74□□□□□ -0.37
APTX-209ENST00000460940 ESPNB1AK53 854 aa12.74□□□□□ -0.37
APTX-209ENST00000460940 PIK3CDO00329 1044 aa12.74□□□□□ -0.37
APTX-209ENST00000460940 ST18O60284 1047 aa12.74□□□□□ -0.37
APTX-209ENST00000460940 MSCO60682 206 aa12.74□□□□□ -0.37
APTX-209ENST00000460940 SCG2P13521 617 aa12.74□□□□□ -0.37
APTX-209ENST00000460940 ALDH5A1P51649 535 aaPredicted RBP12.74□□□□□ -0.37
APTX-209ENST00000460940 SCRN1Q12765 414 aa12.74□□□□□ -0.37
APTX-209ENST00000460940 STK3Q13188 491 aa12.74□□□□□ -0.37
APTX-209ENST00000460940 WWC2Q6AWC2 1192 aa12.74□□□□□ -0.37
APTX-209ENST00000460940 CUL5Q93034 780 aa12.74□□□□□ -0.37
APTX-209ENST00000460940 GLT8D2Q9H1C3 349 aa12.74□□□□□ -0.37
APTX-209ENST00000460940 ABHD16BQ9H3Z7 469 aa12.74□□□□□ -0.37
APTX-209ENST00000460940 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.74□□□□□ -0.37
APTX-209ENST00000460940 BARHL2Q9NY43 387 aa12.74□□□□□ -0.37
APTX-209ENST00000460940 LIMCH1Q9UPQ0 1083 aa12.74□□□□□ -0.37
APTX-209ENST00000460940 LCTP09848 1927 aa12.74□□□□□ -0.37
APTX-209ENST00000460940 ASTN1O14525 1302 aa12.74□□□□□ -0.37
APTX-209ENST00000460940 KIAA0100Q14667 2235 aaKnown RBP12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms