RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 GPBP1Q86WP2 473 aa12.92□□□□□ -0.34
NPHP4-204ENST00000460696 FBXL16Q8N461 479 aa12.92□□□□□ -0.34
NPHP4-204ENST00000460696 RIOK1Q9BRS2 568 aaKnown RBP12.92□□□□□ -0.34
NPHP4-204ENST00000460696 FAM196BA6NMK8 535 aa12.91□□□□□ -0.34
NPHP4-204ENST00000460696 CETN1Q12798 172 aa12.91□□□□□ -0.34
NPHP4-204ENST00000460696 CERKLQ49MI3 558 aaPredicted RBP12.91□□□□□ -0.34
NPHP4-204ENST00000460696 MAATS1Q7Z4T9 603 aa12.91□□□□□ -0.34
NPHP4-204ENST00000460696 SPICE1Q8N0Z3 855 aa12.91□□□□□ -0.34
NPHP4-204ENST00000460696 ZNF710Q8N1W2 664 aa12.91□□□□□ -0.34
NPHP4-204ENST00000460696 WDR24Q96S15 920 aa12.91□□□□□ -0.34
NPHP4-204ENST00000460696 HAUS4Q9H6D7 363 aa12.91□□□□□ -0.34
NPHP4-204ENST00000460696 KIAA1024Q9UPX6 916 aa12.91□□□□□ -0.34
NPHP4-204ENST00000460696 DNM3Q9UQ16 869 aa12.91□□□□□ -0.34
NPHP4-204ENST00000460696 SLC9C1Q4G0N8 1177 aa12.91□□□□□ -0.34
NPHP4-204ENST00000460696 SLFN13Q68D06 897 aa12.91□□□□□ -0.34
NPHP4-204ENST00000460696 PANX2Q96RD6 677 aa12.91□□□□□ -0.34
NPHP4-204ENST00000460696 TMEM260Q9NX78 707 aa12.91□□□□□ -0.34
NPHP4-204ENST00000460696 BCL9O00512 1426 aa12.91□□□□□ -0.34
NPHP4-204ENST00000460696 EEF1GP26641 437 aaKnown RBP12.91□□□□□ -0.34
NPHP4-204ENST00000460696 TUBB4BP68371 445 aa12.91□□□□□ -0.34
NPHP4-204ENST00000460696 NCAPHQ15003 741 aa12.91□□□□□ -0.34
NPHP4-204ENST00000460696 PTPROQ16827 1216 aa12.91□□□□□ -0.34
NPHP4-204ENST00000460696 FAM26FQ5R3K3 315 aa12.91□□□□□ -0.34
NPHP4-204ENST00000460696 SRGAP1Q7Z6B7 1085 aa12.91□□□□□ -0.34
NPHP4-204ENST00000460696 CLEC10AQ8IUN9 316 aa12.91□□□□□ -0.34
NPHP4-204ENST00000460696 SULF1Q8IWU6 871 aa12.91□□□□□ -0.34
NPHP4-204ENST00000460696 SLC16A10Q8TF71 515 aa12.91□□□□□ -0.34
NPHP4-204ENST00000460696 GOPCQ9HD26 462 aa12.91□□□□□ -0.34
NPHP4-204ENST00000460696 DDX39AO00148 427 aaKnown RBP12.9□□□□□ -0.34
NPHP4-204ENST00000460696 LAD1O00515 517 aa12.9□□□□□ -0.34
NPHP4-204ENST00000460696 ACTN4O43707 911 aaKnown RBP12.9□□□□□ -0.34
NPHP4-204ENST00000460696 TTLL1O95922 423 aa12.9□□□□□ -0.34
NPHP4-204ENST00000460696 SUPT20HQ8NEM7 779 aa12.9□□□□□ -0.34
NPHP4-204ENST00000460696 POTEMA6NI47 508 aa12.9□□□□□ -0.34
NPHP4-204ENST00000460696 NBPF11Q86T75 865 aa12.9□□□□□ -0.34
NPHP4-204ENST00000460696 RABGGTAQ92696 567 aa12.9□□□□□ -0.34
NPHP4-204ENST00000460696 DHTKD1Q96HY7 919 aaPredicted RBP12.9□□□□□ -0.34
NPHP4-204ENST00000460696 AK8Q96MA6 479 aa12.9□□□□□ -0.34
NPHP4-204ENST00000460696 PARD6BQ9BYG5 372 aa12.9□□□□□ -0.34
NPHP4-204ENST00000460696 GPSM2P81274 684 aa12.9□□□□□ -0.34
NPHP4-204ENST00000460696 RASSF7Q02833 373 aa12.9□□□□□ -0.34
NPHP4-204ENST00000460696 TUBB2AQ13885 445 aa12.9□□□□□ -0.34
NPHP4-204ENST00000460696 CCDC174Q6PII3 467 aa12.9□□□□□ -0.34
NPHP4-204ENST00000460696 TUBB2BQ9BVA1 445 aa12.9□□□□□ -0.34
NPHP4-204ENST00000460696 PANK4Q9NVE7 773 aa12.9□□□□□ -0.34
NPHP4-204ENST00000460696 PCDHB13Q9Y5F0 798 aa12.9□□□□□ -0.34
NPHP4-204ENST00000460696 PHLPP1O60346 1717 aa12.89□□□□□ -0.35
NPHP4-204ENST00000460696 ZMYND10O75800 440 aa12.89□□□□□ -0.35
NPHP4-204ENST00000460696 CCNE1P24864 410 aa12.89□□□□□ -0.35
NPHP4-204ENST00000460696 ICA1Q05084 483 aa12.89□□□□□ -0.35
NPHP4-204ENST00000460696 KLHL30Q0D2K2 578 aa12.89□□□□□ -0.35
NPHP4-204ENST00000460696 EARS2Q5JPH6 523 aaKnown RBP12.89□□□□□ -0.35
NPHP4-204ENST00000460696 CPXCR1Q8N123 301 aa12.89□□□□□ -0.35
NPHP4-204ENST00000460696 TSGA10Q9BZW7 698 aa12.89□□□□□ -0.35
NPHP4-204ENST00000460696 FAM107BQ9H098 131 aa12.89□□□□□ -0.35
NPHP4-204ENST00000460696 TOPAZ1Q8N9V7 1692 aa12.89□□□□□ -0.35
NPHP4-204ENST00000460696 CNTNAP5Q8WYK1 1306 aa12.89□□□□□ -0.35
NPHP4-204ENST00000460696 BUB1O43683 1085 aa12.89□□□□□ -0.35
NPHP4-204ENST00000460696 NDUFA10O95299 355 aa12.89□□□□□ -0.35
NPHP4-204ENST00000460696 GDF11O95390 407 aa12.89□□□□□ -0.35
NPHP4-204ENST00000460696 RPL13P26373 211 aaKnown RBP12.89□□□□□ -0.35
NPHP4-204ENST00000460696 SP4Q02446 784 aa12.89□□□□□ -0.35
NPHP4-204ENST00000460696 PPARDQ03181 441 aa12.89□□□□□ -0.35
NPHP4-204ENST00000460696 GRM4Q14833 912 aa12.89□□□□□ -0.35
NPHP4-204ENST00000460696 SEC23AQ15436 765 aa12.89□□□□□ -0.35
NPHP4-204ENST00000460696 ASPRV1Q53RT3 343 aa12.89□□□□□ -0.35
NPHP4-204ENST00000460696 TAX1BP1Q86VP1 789 aa12.89□□□□□ -0.35
NPHP4-204ENST00000460696 SMCR8Q8TEV9 937 aaPredicted RBP12.89□□□□□ -0.35
NPHP4-204ENST00000460696 NT5C3AQ9H0P0 336 aa12.89□□□□□ -0.35
NPHP4-204ENST00000460696 FOXP2O15409 715 aa12.89□□□□□ -0.35
NPHP4-204ENST00000460696 GCNT3O95395 438 aa12.89□□□□□ -0.35
NPHP4-204ENST00000460696 TUBBP07437 444 aa12.89□□□□□ -0.35
NPHP4-204ENST00000460696 PRAMEF18Q5VWM3 479 aa12.89□□□□□ -0.35
NPHP4-204ENST00000460696 TPH2Q8IWU9 490 aa12.89□□□□□ -0.35
NPHP4-204ENST00000460696 HPS3Q969F9 1004 aa12.89□□□□□ -0.35
NPHP4-204ENST00000460696 NAP1L4Q99733 375 aaKnown RBP12.89□□□□□ -0.35
NPHP4-204ENST00000460696 MRPL44Q9H9J2 332 aaKnown RBP12.89□□□□□ -0.35
NPHP4-204ENST00000460696 BARHL2Q9NY43 387 aa12.89□□□□□ -0.35
NPHP4-204ENST00000460696 RSPH14Q9UHP6 348 aa12.89□□□□□ -0.35
NPHP4-204ENST00000460696 RIC1Q4ADV7 1423 aa12.89□□□□□ -0.35
NPHP4-204ENST00000460696 HSF2BPO75031 334 aa12.88□□□□□ -0.35
NPHP4-204ENST00000460696 SNAP25P60880 206 aa12.88□□□□□ -0.35
NPHP4-204ENST00000460696 IFFO1Q0D2I5 559 aa12.88□□□□□ -0.35
NPHP4-204ENST00000460696 TRAF1Q13077 416 aa12.88□□□□□ -0.35
NPHP4-204ENST00000460696 PABPC4Q13310 644 aaKnown RBP eCLIP12.88□□□□□ -0.35
NPHP4-204ENST00000460696 NYAP1Q6ZVC0 841 aa12.88□□□□□ -0.35
NPHP4-204ENST00000460696 RDH13Q8NBN7 331 aa12.88□□□□□ -0.35
NPHP4-204ENST00000460696 CUEDC2Q9H467 287 aa12.88□□□□□ -0.35
NPHP4-204ENST00000460696 ADGRG1Q9Y653 693 aa12.88□□□□□ -0.35
NPHP4-204ENST00000460696 BCL9LQ86UU0 1499 aa12.88□□□□□ -0.35
NPHP4-204ENST00000460696 SLIT3O75094 1523 aa12.88□□□□□ -0.35
NPHP4-204ENST00000460696 XRN1Q8IZH2 1706 aaKnown RBP12.88□□□□□ -0.35
NPHP4-204ENST00000460696 SOCS7O14512 581 aa12.88□□□□□ -0.35
NPHP4-204ENST00000460696 KIAA0754O94854 1291 aa12.88□□□□□ -0.35
NPHP4-204ENST00000460696 KRT13P13646 458 aa12.88□□□□□ -0.35
NPHP4-204ENST00000460696 YY1P25490 414 aa12.88□□□□□ -0.35
NPHP4-204ENST00000460696 POLR2FP61218 127 aaKnown RBP12.88□□□□□ -0.35
NPHP4-204ENST00000460696 IFI16Q16666 785 aaKnown RBP12.88□□□□□ -0.35
NPHP4-204ENST00000460696 WHAMMP3Q1A5X7 153 aa12.88□□□□□ -0.35
NPHP4-204ENST00000460696 UTP14CQ5TAP6 766 aaKnown RBP12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms