RNA–Protein interactions for RNA: ENST00000460158.1

VPS8-215, Transcript of VPS8, CORVET complex subunit, human

TSL 3

Gene VPS8, Length 366 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS8-215	ENST00000460158	CCDC140	Q96MF4	163 aa		4.95	□□□□□ -1.62
VPS8-215	ENST00000460158	PTCHD1	Q96NR3	888 aa		4.95	□□□□□ -1.62
VPS8-215	ENST00000460158	CDC6	Q99741	560 aa		4.95	□□□□□ -1.62
VPS8-215	ENST00000460158	KRTAP4-11	Q9BYQ6	195 aa		4.95	□□□□□ -1.62
VPS8-215	ENST00000460158	C19orf73	Q9NVV2	129 aa		4.95	□□□□□ -1.62
VPS8-215	ENST00000460158	CLEC1B	Q9P126	229 aa		4.95	□□□□□ -1.62
VPS8-215	ENST00000460158	TMEM59L	Q9UK28	342 aa		4.95	□□□□□ -1.62
VPS8-215	ENST00000460158	TRBV23-1	A0A0A0MS06	115 aa		4.94	□□□□□ -1.62
VPS8-215	ENST00000460158	BLACE	A4D250	179 aa		4.94	□□□□□ -1.62
VPS8-215	ENST00000460158	KRTAP9-7	A8MTY7	169 aa		4.94	□□□□□ -1.62
VPS8-215	ENST00000460158	ARNTL	O00327	626 aa		4.94	□□□□□ -1.62
VPS8-215	ENST00000460158	SMARCA5	O60264	1052 aa	Predicted RBP	4.94	□□□□□ -1.62
VPS8-215	ENST00000460158	CP	P00450	1065 aa		4.94	□□□□□ -1.62
VPS8-215	ENST00000460158	PLS3	P13797	630 aa		4.94	□□□□□ -1.62
VPS8-215	ENST00000460158	ENDOU	P21128	410 aa	Known RBP	4.94	□□□□□ -1.62
VPS8-215	ENST00000460158	GDNF	P39905	211 aa		4.94	□□□□□ -1.62
VPS8-215	ENST00000460158	ERVFC1	P60507	584 aa		4.94	□□□□□ -1.62
VPS8-215	ENST00000460158	TMEM67	Q5HYA8	995 aa		4.94	□□□□□ -1.62
VPS8-215	ENST00000460158	SLC35F1	Q5T1Q4	408 aa		4.94	□□□□□ -1.62
VPS8-215	ENST00000460158	MPZL3	Q6UWV2	235 aa		4.94	□□□□□ -1.62
VPS8-215	ENST00000460158	SYDE1	Q6ZW31	735 aa	Predicted RBP	4.94	□□□□□ -1.62
VPS8-215	ENST00000460158	SCUBE1	Q8IWY4	988 aa		4.94	□□□□□ -1.62
VPS8-215	ENST00000460158	LRRC56	Q8IYG6	542 aa	Predicted RBP	4.94	□□□□□ -1.62
VPS8-215	ENST00000460158	NAT16	Q8N8M0	369 aa		4.94	□□□□□ -1.62
VPS8-215	ENST00000460158	ZSWIM2	Q8NEG5	633 aa		4.94	□□□□□ -1.62
VPS8-215	ENST00000460158	NPLOC4	Q8TAT6	608 aa		4.94	□□□□□ -1.62
VPS8-215	ENST00000460158	SYTL4	Q96C24	671 aa	Predicted RBP	4.94	□□□□□ -1.62
VPS8-215	ENST00000460158	MAP6	Q96JE9	813 aa		4.94	□□□□□ -1.62
VPS8-215	ENST00000460158	HHIPL1	Q96JK4	782 aa		4.94	□□□□□ -1.62
VPS8-215	ENST00000460158	SLC26A8	Q96RN1	970 aa		4.94	□□□□□ -1.62
VPS8-215	ENST00000460158	DHRS4	Q9BTZ2	278 aa		4.94	□□□□□ -1.62
VPS8-215	ENST00000460158	TMEFF2	Q9UIK5	374 aa	Predicted RBP	4.94	□□□□□ -1.62
VPS8-215	ENST00000460158	TMA7	Q9Y2S6	64 aa	Known RBP	4.94	□□□□□ -1.62
VPS8-215	ENST00000460158	FADS2P1	A8MWK0	482 aa		4.93	□□□□□ -1.62
VPS8-215	ENST00000460158	USP2	O75604	605 aa	Predicted RBP	4.93	□□□□□ -1.62
VPS8-215	ENST00000460158	CDK11B	P21127	795 aa	Known RBP	4.93	□□□□□ -1.62
VPS8-215	ENST00000460158	MAP4K2	Q12851	820 aa		4.93	□□□□□ -1.62
VPS8-215	ENST00000460158	DUSP4	Q13115	394 aa		4.93	□□□□□ -1.62
VPS8-215	ENST00000460158	NTRK3	Q16288	839 aa		4.93	□□□□□ -1.62
VPS8-215	ENST00000460158	PRR23B	Q6ZRT6	265 aa		4.93	□□□□□ -1.62
VPS8-215	ENST00000460158	LCNL1	Q6ZST4	164 aa		4.93	□□□□□ -1.62
VPS8-215	ENST00000460158	CPNE8	Q86YQ8	564 aa		4.93	□□□□□ -1.62
VPS8-215	ENST00000460158	CCDC103	Q8IW40	242 aa		4.93	□□□□□ -1.62
VPS8-215	ENST00000460158	KISS1R	Q969F8	398 aa	Predicted RBP	4.93	□□□□□ -1.62
VPS8-215	ENST00000460158	FANCL	Q9NW38	375 aa		4.93	□□□□□ -1.62
VPS8-215	ENST00000460158	TMEM260	Q9NX78	707 aa		4.93	□□□□□ -1.62
VPS8-215	ENST00000460158	TNFRSF10D	Q9UBN6	386 aa		4.93	□□□□□ -1.62
VPS8-215	ENST00000460158	RAPGEFL1	Q9UHV5	662 aa		4.93	□□□□□ -1.62
VPS8-215	ENST00000460158	MRPS23	Q9Y3D9	190 aa	Known RBP	4.93	□□□□□ -1.62
VPS8-215	ENST00000460158	NPHP3-ACAD11	A0A0J9YXS1	232 aa		4.92	□□□□□ -1.62
VPS8-215	ENST00000460158	NFIB	O00712	420 aa		4.92	□□□□□ -1.62
VPS8-215	ENST00000460158	TBC1D8	O95759	1140 aa		4.92	□□□□□ -1.62
VPS8-215	ENST00000460158	KRT1	P04264	644 aa		4.92	□□□□□ -1.62
VPS8-215	ENST00000460158	PAM	P19021	973 aa		4.92	□□□□□ -1.62
VPS8-215	ENST00000460158	LAPTM5	Q13571	262 aa		4.92	□□□□□ -1.62
VPS8-215	ENST00000460158	ZC3H12B	Q5HYM0	836 aa	Known RBP	4.92	□□□□□ -1.62
VPS8-215	ENST00000460158	MBLAC2	Q68D91	279 aa		4.92	□□□□□ -1.62
VPS8-215	ENST00000460158	SDE2	Q6IQ49	451 aa		4.92	□□□□□ -1.62
VPS8-215	ENST00000460158	CYP2R1	Q6VVX0	501 aa		4.92	□□□□□ -1.62
VPS8-215	ENST00000460158	USP53	Q70EK8	1073 aa		4.92	□□□□□ -1.62
VPS8-215	ENST00000460158	PPIL6	Q8IXY8	311 aa		4.92	□□□□□ -1.62
VPS8-215	ENST00000460158	FBXO15	Q8NCQ5	510 aa	Predicted RBP	4.92	□□□□□ -1.62
VPS8-215	ENST00000460158	PDZD8	Q8NEN9	1154 aa		4.92	□□□□□ -1.62
VPS8-215	ENST00000460158	IPO9	Q96P70	1041 aa	Known RBP	4.92	□□□□□ -1.62
VPS8-215	ENST00000460158	SP110	Q9HB58	689 aa		4.92	□□□□□ -1.62
VPS8-215	ENST00000460158	NOTO	A8MTQ0	251 aa		4.91	□□□□□ -1.62
VPS8-215	ENST00000460158	PPP1R12A	O14974	1030 aa	Predicted RBP	4.91	□□□□□ -1.62
VPS8-215	ENST00000460158	MEFV	O15553	781 aa	Predicted RBP	4.91	□□□□□ -1.62
VPS8-215	ENST00000460158	EFEMP2	O95967	443 aa		4.91	□□□□□ -1.62
VPS8-215	ENST00000460158	HPX	P02790	462 aa		4.91	□□□□□ -1.62
VPS8-215	ENST00000460158	ZSCAN22	P10073	491 aa	Predicted RBP	4.91	□□□□□ -1.62
VPS8-215	ENST00000460158	TRHR	P34981	398 aa	Predicted RBP	4.91	□□□□□ -1.62
VPS8-215	ENST00000460158	KIR2DL1	P43626	348 aa	Predicted RBP	4.91	□□□□□ -1.62
VPS8-215	ENST00000460158	KIR2DL2	P43627	348 aa	Predicted RBP	4.91	□□□□□ -1.62
VPS8-215	ENST00000460158	RTP1	P59025	263 aa		4.91	□□□□□ -1.62
VPS8-215	ENST00000460158	SUMO1	P63165	101 aa	Known RBP	4.91	□□□□□ -1.62
VPS8-215	ENST00000460158	KIR3DS1	Q14943	382 aa		4.91	□□□□□ -1.62
VPS8-215	ENST00000460158	INF2	Q27J81	1249 aa		4.91	□□□□□ -1.62
VPS8-215	ENST00000460158	TIGD5	Q53EQ6	642 aa		4.91	□□□□□ -1.62
VPS8-215	ENST00000460158	ACBD5	Q5T8D3	534 aa	Predicted RBP	4.91	□□□□□ -1.62
VPS8-215	ENST00000460158	HLA-DQA1	Q5Y7H0	255 aa		4.91	□□□□□ -1.62
VPS8-215	ENST00000460158	LILRA6	Q6PI73	481 aa		4.91	□□□□□ -1.62
VPS8-215	ENST00000460158	CEP128	Q6ZU80	1094 aa		4.91	□□□□□ -1.62
VPS8-215	ENST00000460158	SLCO6A1	Q86UG4	719 aa		4.91	□□□□□ -1.62
VPS8-215	ENST00000460158	AMIGO3	Q86WK7	504 aa		4.91	□□□□□ -1.62
VPS8-215	ENST00000460158	HOMER1	Q86YM7	354 aa		4.91	□□□□□ -1.62
VPS8-215	ENST00000460158	ANKS4B	Q8N8V4	417 aa		4.91	□□□□□ -1.62
VPS8-215	ENST00000460158	APPBP2	Q92624	585 aa		4.91	□□□□□ -1.62
VPS8-215	ENST00000460158	JMJD8	Q96S16	334 aa		4.91	□□□□□ -1.62
VPS8-215	ENST00000460158	MMP19	Q99542	508 aa		4.91	□□□□□ -1.62
VPS8-215	ENST00000460158	C19orf44	Q9H6X5	657 aa		4.91	□□□□□ -1.62
VPS8-215	ENST00000460158	C7orf72	A4D263	438 aa		4.9	□□□□□ -1.63
VPS8-215	ENST00000460158	ENPP3	O14638	875 aa		4.9	□□□□□ -1.63
VPS8-215	ENST00000460158	PSPN	O60542	156 aa		4.9	□□□□□ -1.63
VPS8-215	ENST00000460158	CDC45	O75419	566 aa		4.9	□□□□□ -1.63
VPS8-215	ENST00000460158	ASMTL	O95671	621 aa		4.9	□□□□□ -1.63
VPS8-215	ENST00000460158	C6orf222	P0C671	652 aa	Predicted RBP	4.9	□□□□□ -1.63
VPS8-215	ENST00000460158	C1QTNF9	P0C862	333 aa		4.9	□□□□□ -1.63
VPS8-215	ENST00000460158	LCP1	P13796	627 aa		4.9	□□□□□ -1.63
VPS8-215	ENST00000460158	CHRNE	Q04844	493 aa		4.9	□□□□□ -1.63

Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms