RNA–Protein interactions for RNA: ENST00000459775.5

USP39-210, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 2,148 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-210ENST00000459775 PTPN18Q99952 460 aa11.81□□□□□ -0.52
USP39-210ENST00000459775 SPDYE16A6NNV3 312 aaPredicted RBP11.8□□□□□ -0.52
USP39-210ENST00000459775 COG2Q14746 738 aa11.8□□□□□ -0.52
USP39-210ENST00000459775 PIK3AP1Q6ZUJ8 805 aa11.8□□□□□ -0.52
USP39-210ENST00000459775 FAM160B2Q86V87 743 aa11.8□□□□□ -0.52
USP39-210ENST00000459775 TNFRSF25Q93038 417 aa11.8□□□□□ -0.52
USP39-210ENST00000459775 SLC38A10Q9HBR0 1119 aa11.8□□□□□ -0.52
USP39-210ENST00000459775 SMCHD1A6NHR9 2005 aa11.8□□□□□ -0.52
USP39-210ENST00000459775 CCL15-CCL14A0A0B4J2E2 113 aa11.8□□□□□ -0.52
USP39-210ENST00000459775 FIBPO43427 364 aa11.8□□□□□ -0.52
USP39-210ENST00000459775 U2AF2P26368 475 aaKnown RBP eCLIP11.8□□□□□ -0.52
USP39-210ENST00000459775 DSG3P32926 999 aa11.8□□□□□ -0.52
USP39-210ENST00000459775 KRT2P35908 639 aa11.8□□□□□ -0.52
USP39-210ENST00000459775 TOB1P50616 345 aaPredicted RBP11.8□□□□□ -0.52
USP39-210ENST00000459775 SNAPC2Q13487 334 aa11.8□□□□□ -0.52
USP39-210ENST00000459775 TMEM132BQ14DG7 1078 aa11.8□□□□□ -0.52
USP39-210ENST00000459775 NFKBIBQ15653 356 aa11.8□□□□□ -0.52
USP39-210ENST00000459775 CCL15Q16663 113 aa11.8□□□□□ -0.52
USP39-210ENST00000459775 NOSTRINQ8IVI9 506 aa11.8□□□□□ -0.52
USP39-210ENST00000459775 BLIDQ8IZY5 108 aa11.8□□□□□ -0.52
USP39-210ENST00000459775 USP28Q96RU2 1077 aa11.8□□□□□ -0.52
USP39-210ENST00000459775 AMNQ9BXJ7 453 aa11.8□□□□□ -0.52
USP39-210ENST00000459775 ZMYND12Q9H0C1 365 aa11.8□□□□□ -0.52
USP39-210ENST00000459775 ASCC2Q9H1I8 757 aaPredicted RBP11.8□□□□□ -0.52
USP39-210ENST00000459775 IGSF5Q9NSI5 407 aa11.8□□□□□ -0.52
USP39-210ENST00000459775 PCDHA6Q9UN73 950 aa11.8□□□□□ -0.52
USP39-210ENST00000459775 PCDHA4Q9UN74 947 aa11.8□□□□□ -0.52
USP39-210ENST00000459775 PCDHA8Q9Y5H6 950 aa11.8□□□□□ -0.52
USP39-210ENST00000459775 CLIC4Q9Y696 253 aa11.8□□□□□ -0.52
USP39-210ENST00000459775 MRVI1Q9Y6F6 885 aa11.8□□□□□ -0.52
USP39-210ENST00000459775 BTBD19C9JJ37 291 aa11.79□□□□□ -0.52
USP39-210ENST00000459775 M0R2N6 131 aa11.79□□□□□ -0.52
USP39-210ENST00000459775 PLA2G6O60733 806 aa11.79□□□□□ -0.52
USP39-210ENST00000459775 ECM2O94769 699 aaPredicted RBP11.79□□□□□ -0.52
USP39-210ENST00000459775 ALAS1P13196 640 aa11.79□□□□□ -0.52
USP39-210ENST00000459775 XBP1P17861 261 aa11.79□□□□□ -0.52
USP39-210ENST00000459775 PLS1Q14651 629 aa11.79□□□□□ -0.52
USP39-210ENST00000459775 SAFBQ15424 915 aaKnown RBP eCLIP11.79□□□□□ -0.52
USP39-210ENST00000459775 MUM1L1Q5H9M0 696 aa11.79□□□□□ -0.52
USP39-210ENST00000459775 RASAL3Q86YV0 1011 aa11.79□□□□□ -0.52
USP39-210ENST00000459775 REPS2Q8NFH8 660 aa11.79□□□□□ -0.52
USP39-210ENST00000459775 PURBQ96QR8 312 aaKnown RBP11.79□□□□□ -0.52
USP39-210ENST00000459775 PSTPIP2Q9H939 334 aa11.79□□□□□ -0.52
USP39-210ENST00000459775 SH3GLB2Q9NR46 395 aa11.79□□□□□ -0.52
USP39-210ENST00000459775 BTBD7Q9P203 1132 aa11.79□□□□□ -0.52
USP39-210ENST00000459775 CCPG1Q9ULG6 757 aa11.79□□□□□ -0.52
USP39-210ENST00000459775 NFIBO00712 420 aa11.78□□□□□ -0.52
USP39-210ENST00000459775 MYSM1Q5VVJ2 828 aa11.78□□□□□ -0.52
USP39-210ENST00000459775 FBXO46Q6PJ61 603 aaPredicted RBP11.78□□□□□ -0.52
USP39-210ENST00000459775 PAGR1Q9BTK6 254 aa11.78□□□□□ -0.52
USP39-210ENST00000459775 TXNRD2Q9NNW7 524 aa11.78□□□□□ -0.52
USP39-210ENST00000459775 AGTPBP1Q9UPW5 1226 aa11.78□□□□□ -0.52
USP39-210ENST00000459775 MYH6P13533 1939 aa11.78□□□□□ -0.52
USP39-210ENST00000459775 ADCY7P51828 1080 aa11.78□□□□□ -0.52
USP39-210ENST00000459775 PPP4R3CPQ6ZMV5 832 aa11.78□□□□□ -0.52
USP39-210ENST00000459775 PROCA1Q8NCQ7 364 aaPredicted RBP11.78□□□□□ -0.52
USP39-210ENST00000459775 UIMC1Q96RL1 719 aa11.78□□□□□ -0.52
USP39-210ENST00000459775 CFHR5Q9BXR6 569 aa11.78□□□□□ -0.52
USP39-210ENST00000459775 FOXP1Q9H334 677 aaPredicted RBP11.78□□□□□ -0.52
USP39-210ENST00000459775 ADAMTS5Q9UNA0 930 aa11.78□□□□□ -0.52
USP39-210ENST00000459775 PCDHB6Q9Y5E3 794 aa11.78□□□□□ -0.52
USP39-210ENST00000459775 DDX49Q9Y6V7 483 aaKnown RBP11.78□□□□□ -0.52
USP39-210ENST00000459775 PDHXO00330 501 aa11.77□□□□□ -0.52
USP39-210ENST00000459775 MEIS2O14770 477 aa11.77□□□□□ -0.52
USP39-210ENST00000459775 ZBED4O75132 1171 aa11.77□□□□□ -0.52
USP39-210ENST00000459775 GADD45BO75293 160 aaPredicted RBP11.77□□□□□ -0.52
USP39-210ENST00000459775 PRPF40AO75400 957 aaKnown RBP11.77□□□□□ -0.52
USP39-210ENST00000459775 CFBP00751 764 aa11.77□□□□□ -0.52
USP39-210ENST00000459775 ICAM1P05362 532 aa11.77□□□□□ -0.52
USP39-210ENST00000459775 MCCD1P59942 119 aaPredicted RBP11.77□□□□□ -0.52
USP39-210ENST00000459775 FOXD4Q12950 439 aaPredicted RBP11.77□□□□□ -0.52
USP39-210ENST00000459775 INF2Q27J81 1249 aa11.77□□□□□ -0.52
USP39-210ENST00000459775 Q3C1V9 767 aa11.77□□□□□ -0.52
USP39-210ENST00000459775 KRBA2Q6ZNG9 492 aa11.77□□□□□ -0.52
USP39-210ENST00000459775 FCHSD1Q86WN1 690 aa11.77□□□□□ -0.52
USP39-210ENST00000459775 CCDC148Q8NFR7 591 aa11.77□□□□□ -0.52
USP39-210ENST00000459775 ZSCAN16Q9H4T2 348 aaPredicted RBP11.77□□□□□ -0.52
USP39-210ENST00000459775 C6orf50Q9HD87 102 aa11.77□□□□□ -0.52
USP39-210ENST00000459775 ZNF214Q9UL59 606 aaPredicted RBP11.77□□□□□ -0.52
USP39-210ENST00000459775 NUB1Q9Y5A7 615 aa11.77□□□□□ -0.52
USP39-210ENST00000459775 PTPRFP10586 1907 aa11.77□□□□□ -0.53
USP39-210ENST00000459775 EDIL3O43854 480 aa11.77□□□□□ -0.53
USP39-210ENST00000459775 HOXA7P31268 230 aaPredicted RBP11.77□□□□□ -0.53
USP39-210ENST00000459775 MCM4P33991 863 aa11.77□□□□□ -0.53
USP39-210ENST00000459775 GTF2A2P52657 109 aa11.77□□□□□ -0.53
USP39-210ENST00000459775 HERVK_113P62684 666 aa11.77□□□□□ -0.53
USP39-210ENST00000459775 UBXN2AP68543 259 aa11.77□□□□□ -0.53
USP39-210ENST00000459775 SNRNP48Q6IEG0 339 aaKnown RBP11.77□□□□□ -0.53
USP39-210ENST00000459775 ARMCX6Q7L4S7 300 aa11.77□□□□□ -0.53
USP39-210ENST00000459775 FASTKD5Q7L8L6 764 aaKnown RBP11.77□□□□□ -0.53
USP39-210ENST00000459775 CLEC4DQ8WXI8 215 aa11.77□□□□□ -0.53
USP39-210ENST00000459775 RIC8AQ9NPQ8 531 aa11.77□□□□□ -0.53
USP39-210ENST00000459775 HOXC10Q9NYD6 342 aa11.77□□□□□ -0.53
USP39-210ENST00000459775 RBPJLQ9UBG7 517 aa11.77□□□□□ -0.53
USP39-210ENST00000459775 CTDP1Q9Y5B0 961 aaPredicted RBP11.77□□□□□ -0.53
USP39-210ENST00000459775 IGF2BP3O00425 579 aaKnown RBP eCLIP11.76□□□□□ -0.53
USP39-210ENST00000459775 CNMDO75829 334 aa11.76□□□□□ -0.53
USP39-210ENST00000459775 CETPP11597 493 aa11.76□□□□□ -0.53
USP39-210ENST00000459775 CALML3P27482 149 aa11.76□□□□□ -0.53
USP39-210ENST00000459775 SREBF2Q12772 1141 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms